EWM30246.1, cds352 (CDS) Nannochloropsis gaditana

Overview
NameEWM30246.1
Unique Namecds352
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:861107..861202 -
Alignment locationCM002455.1:859923..860849 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30246.1
ProductCystinosin/ERS1p repeat containing protein
Orig transcript idgnl|cribi|Naga_100003g144.1763.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:861107..861202 -
CM002455.1supercontigCM002455.1:859923..860849 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005282LC_transporter
IPR006603PQ-loop_rpt
Homology
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|585112905|gb|EWM30246.1| (Cystinosin/ERS1p repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:    1 MRRLNYLSSFRGDPNAASLRLIAFSSFSIYHSAAICVNCQARPSTDTWCLKTEGMHVPLLHGKRDGAEVATNLYNRIDEKVDHSDTQEGADCINAQVPRQNDRGLRMLQKASREVVAFLVLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTGTQEIMTG 340
            MRRLNYLSSFRGDPNAASLRLIAFSSFSIYHSAAICVNCQARPSTDTWCLKTEGMHVPLLHGKRDGAEVATNLYNRIDEKVDHSDTQEGADCINAQVPRQNDRGLRMLQKASREVVAFLVLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTGTQEIMTG
Sbjct:    1 MRRLNYLSSFRGDPNAASLRLIAFSSFSIYHSAAICVNCQARPSTDTWCLKTEGMHVPLLHGKRDGAEVATNLYNRIDEKVDHSDTQEGADCINAQVPRQNDRGLRMLQKASREVVAFLVLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTGTQEIMTG 340          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|1032647147|gb|OAQ28449.1| (lysosomal cystine transporter [Mortierella elongata AG-77])

HSP 1 Score: 183.726 bits (465), Expect = 4.439e-52
Identity = 93/190 (48.95%), Postives = 128/190 (67.37%), Query Frame = 0
Query:  146 LSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVI--TCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            LS+++GW YF+AW+ SFYPQ  LNWR+++ +GLS+ F  LN+LGFL YS++ LSF+  P++QE YRKR++G +N V   DV FA HA IL++ T+ Q L      IY+R     +   T LL++  T  A +V  A   G S W+  LY +S++KL +S IK  PQ +LNY  +STVGWSIHN+L DFTG
Sbjct:   13 LSHVIGWAYFIAWSASFYPQAILNWRRKSVQGLSMDFIYLNVLGFLCYSIFNLSFYYSPEVQEEYRKRNDGQDNLVRANDVFFAVHALILSSFTLFQTL------IYKRDEGQKVSSPTKLLILISTFGASIVFGAAYAGTSQWIDVLYYLSYIKLGISFIKYCPQVYLNYASQSTVGWSIHNILLDFTG 196          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|646285090|gb|KDQ07029.1| (hypothetical protein BOTBODRAFT_39178 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 181.415 bits (459), Expect = 1.303e-51
Identity = 92/193 (47.67%), Postives = 127/193 (65.80%), Query Frame = 0
Query:  141 EGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
              Y  LS ++GW YF AW+VSFYPQ+ LNWR+++ EGLS+ F  LN LG L Y++Y  +F+  P ++  YR RH GHEN V   DV FA HA ++++ T+AQ   Y   R  ++LS+    +LT +     V LV++S+   G + ++  LY +S  KL+VS  K VPQA+LNY+RKSTVGWSI N+L DFTG
Sbjct:    4 NAYQVLSQVIGWTYFTAWSVSFYPQVILNWRRKSVEGLSIDFATLNTLGHLSYAIYNFNFYFNPTVRREYRNRHQGHENSVQPNDVAFAVHAFLISSFTLAQTFWYPRGR-NQQLSYYNTYLLTVVFAALLVNLVMLSS---GQTLFIDLLYNLSSFKLYVSFAKYVPQAWLNYKRKSTVGWSIENILLDFTG 192          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|661185346|emb|CDH52525.1| (lysosomal cystine transporter family [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 174.481 bits (441), Expect = 6.320e-49
Identity = 85/188 (45.21%), Postives = 130/188 (69.15%), Query Frame = 0
Query:  146 LSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            +S+I+GW+YFLAW++SFYPQ  LN+R+++ +GLS+ F   N+LGF  YSV+ LSFFL  +IQ+ YR+R+NG  N V   DV FA HA ++++ T+ Q   Y      +R+S P  +++   +V   +  + V  +    + W+  +Y +S++KL +S+IK +PQA++N+RRKSTVGWSIHN+L DFTG
Sbjct:   18 ISDIIGWVYFLAWSISFYPQAILNYRRKSVQGLSMDFLYFNVLGFFCYSVFNLSFFLSKEIQDEYRERNNGQNNLVRTNDVFFAVHAFLISSFTLTQTFMYTKDE-NQRISSPAKLLICASIVGAFLFTLAVEFQF---AMWIDLMYYLSYVKLLISIIKYLPQAWINFRRKSTVGWSIHNILLDFTG 201          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|1173938209|gb|OQR88587.1| (Lysosomal Cystine Transporter (LCT) Family, partial [Achlya hypogyna])

HSP 1 Score: 173.326 bits (438), Expect = 2.935e-48
Identity = 92/216 (42.59%), Postives = 134/216 (62.04%), Query Frame = 0
Query:  120 VLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDW--LLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            V+ + G  +G  L  N  +    Y  +S++LGWIYF  W+VSF+PQIFLNWR +N EGLS+ F + N++GF  Y+VY  SFF    +Q+ Y+ +HNG  N V + DV F  HA  +TALT  Q   Y   R  R++S  +   L  L ++   A ++V       S +  L +LY +S++KL +S++K VPQ +LNY RKST+GW+I+N+L DF+G
Sbjct:   13 VIAIVGFGLGFGLDANDNVPAP-YNRVSSVLGWIYFACWSVSFWPQIFLNWRLKNVEGLSIDFIVYNIVGFSCYTVYNSSFFWSESVQDEYKAKHNGSPNSVQVNDVFFGIHAVAVTALTYYQTTIYP--RGERKVS-TVCKCLIALALVIIAAFLIVHLASPSSSFFSKLNFLYLLSYVKLAISLVKYVPQVYLNYTRKSTIGWTIYNILLDFSG 224          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|1072220964|gb|OEU05802.1| (PQ-loop-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 174.096 bits (440), Expect = 5.030e-48
Identity = 101/242 (41.74%), Postives = 154/242 (63.64%), Query Frame = 0
Query:  109 QKASREVVA--FLVLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQ--DVVFACHATILTALTVAQMLHY-DGIRIYR-RLSWPILMVLTGLL-VITCVALVVVSARGD----------GPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            +  SR+ VA     + + G  +GL  P+N  L    Y  +S  +G+IYFL+W++SFYPQ+  N+++R+T GLS  F +LN+LGF  Y+ Y  SFF    I+E Y++R+ G + ++T+Q  DV FA HA IL+++T+ Q+ +Y D   I+  +LS P + ++  +L V     L+V++ RG           G  +WL YLY +SF+K+F+S+IK +PQ  LN++RKSTVGWSI N+L DFTG
Sbjct:   17 ETGSRKTVAVGLSTIFVVGTGIGLLTPKNPAL-TPPYQCISAAIGYIYFLSWSISFYPQVMSNFQRRSTVGLSADFCVLNVLGFSCYTAYNASFFWSATIKEYYKQRY-GPDAEITVQSNDVAFAIHALILSSITLCQIAYYGDEPGIWSIKLSKPTIFIIVSILGVCAMYPLLVITHRGRDNVDYEDDAIGRFNWLDYLYILSFVKIFISLIKYIPQVILNFKRKSTVGWSIWNILLDFTG 256          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|813101928|ref|XP_012193660.1| (hypothetical protein SPRG_00163 [Saprolegnia parasitica CBS 223.65] >gi|641541569|gb|KDO35314.1| hypothetical protein SPRG_00163 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.4 bits (433), Expect = 2.586e-47
Identity = 93/216 (43.06%), Postives = 132/216 (61.11%), Query Frame = 0
Query:  120 VLIMAGIVMGLALPRNKELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDW--LLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            V+ + G  +G  L  N  +    Y  +S+I+GW YF  W+VSF+PQIFLNWR +N EGLS+ F   N++GF  Y+VY  SFF    +QE Y+  HNG  N V + DV F  HA  +TALT  Q   Y   R  R++S  +   L  L +    A ++V       S +  L +LY +S++KL +S++K VPQA+LNY+R+ST+GW+I+NVL DF+G
Sbjct:   33 VIAVVGFGLGFGLDANDNVPAP-YNRISSIIGWTYFACWSVSFWPQIFLNWRLKNVEGLSIDFIAYNIVGFSCYTVYNSSFFWSESVQEEYKALHNGSPNSVQVNDVFFGIHAVAVTALTYYQTTIYP--RGERKVS-TVCKSLIALALTIIAAFLIVHLASPSSSFFTKLNFLYLLSYVKLAISLVKYVPQAYLNYKRQSTIGWTIYNVLLDFSG 244          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|672825278|gb|KFH70170.1| (hypothetical protein MVEG_04972 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 170.244 bits (430), Expect = 4.316e-47
Identity = 89/201 (44.28%), Postives = 129/201 (64.18%), Query Frame = 0
Query:  137 ELRNEGYATLSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWP----ILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            EL   G  T S+++GW YF+AW+ SFYPQ  LN+R+++ +GLSL F  LN+LGFL YS++ L+FF    IQ+ YR R++G +N V   DV FA HA +L+  T+ Q   Y   +  + +S P    IL+ +TG L++   A+        G + W+ +LY +S++KL +S +K  PQ +LNY  +STVGWSIHN+L DFTG
Sbjct:    2 ELTGLGSFT-SHVIGWAYFIAWSASFYPQAILNYRRKSVQGLSLDFIFLNVLGFLCYSIFNLAFFFSTTIQDQYRDRNDGQDNLVRSNDVFFAVHALVLSTFTLVQTFLYKRDKD-QSVSSPTKVLILITVTGALIVAASAIW-------GSAQWIDFLYYLSYIKLGISFVKYCPQVYLNYSAQSTVGWSIHNILLDFTG 193          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|1032642838|gb|OAQ24191.1| (lysosomal cystine transporter [Mortierella elongata AG-77])

HSP 1 Score: 176.407 bits (446), Expect = 4.985e-47
Identity = 87/191 (45.55%), Postives = 126/191 (65.97%), Query Frame = 0
Query:  146 LSNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHY---DGIRIYRRLSWPILMVLTGLLVITCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            LS+++GW YF+AW+ SFYPQ  LNWR++  +GLS+ F  LN++GFLFYS++ L+FF   +IQE Y++R++G +N V   DV FA HA IL   T+ Q   Y   +G R+    +W  L+  +G+ V+  V   +    G G  +W+  LY +S++KL +S IK  PQ ++N+  KSTVGWSIHN+L DFTG
Sbjct:   19 LSHLIGWAYFIAWSASFYPQAILNWRRKTVQGLSMDFVHLNVVGFLFYSIFNLAFFFSTEIQEEYKRRNDGQKNLVRANDVFFAVHALILATFTLVQTWVYKRDEGQRV-SGFAWAFLLS-SGVSVLVLVGRAL---SGVGSYEWIDILYFLSYIKLAISFIKYCPQVYINWAAKSTVGWSIHNILLDFTG 204          
BLAST of EWM30246.1 vs. NCBI_GenBank
Match: gi|1183492997|gb|ORZ16669.1| (PQ loop repeat-domain-containing protein [Lobosporangium transversale])

HSP 1 Score: 171.4 bits (433), Expect = 5.120e-47
Identity = 91/197 (46.19%), Postives = 128/197 (64.97%), Query Frame = 0
Query:  140 NEGYATL-SNILGWIYFLAWTVSFYPQIFLNWRQRNTEGLSLGFELLNLLGFLFYSVYALSFFLLPQIQEAYRKRHNGHENKVTIQDVVFACHATILTALTVAQMLHYDGIRIYRRLSWPILMVLTGLLVI--TCVALVVVSARGDGPSDWLLYLYTISFMKLFVSVIKGVPQAFLNYRRKSTVGWSIHNVLCDFTG 333
            ++G+ +L S+ +GW YF+AW+ SFYPQ  LN+R+++ +GLSL F  LN+ GFL YS++ L+FF   ++QE YRKR+ G +N V   DV FA HA IL++LT+ Q        IY+R     +     LLVI  T   L+V+ +     S W+  LY +S++KL +S IK  PQ +LNY  +STVGWS+HNVL DFTG
Sbjct:    9 SQGFGSLISHFIGWAYFIAWSASFYPQAILNYRRKSVQGLSLDFIYLNVFGFLCYSIFNLTFFFSSEVQEEYRKRNGGQDNLVRANDVFFAVHALILSSLTLFQTF------IYKRNESQKISNPAKLLVIISTSGVLIVLYSVTIRSSQWIDLLYYLSYIKLGISFIKYCPQVYLNYSAQSTVGWSVHNVLLDFTG 199          
The following BLAST results are available for this feature:
BLAST of EWM30246.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112905|gb|EWM30246.1|0.000e+0100.00Cystinosin/ERS1p repeat containing protein [Nannoc... [more]
gi|1032647147|gb|OAQ28449.1|4.439e-5248.95lysosomal cystine transporter [Mortierella elongat... [more]
gi|646285090|gb|KDQ07029.1|1.303e-5147.67hypothetical protein BOTBODRAFT_39178 [Botryobasid... [more]
gi|661185346|emb|CDH52525.1|6.320e-4945.21lysosomal cystine transporter family [Lichtheimia ... [more]
gi|1173938209|gb|OQR88587.1|2.935e-4842.59Lysosomal Cystine Transporter (LCT) Family, partia... [more]
gi|1072220964|gb|OEU05802.1|5.030e-4841.74PQ-loop-domain-containing protein [Fragilariopsis ... [more]
gi|813101928|ref|XP_012193660.1|2.586e-4743.06hypothetical protein SPRG_00163 [Saprolegnia paras... [more]
gi|672825278|gb|KFH70170.1|4.316e-4744.28hypothetical protein MVEG_04972 [Mortierella verti... [more]
gi|1032642838|gb|OAQ24191.1|4.985e-4745.55lysosomal cystine transporter [Mortierella elongat... [more]
gi|1183492997|gb|ORZ16669.1|5.120e-4746.19PQ loop repeat-domain-containing protein [Lobospor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna352rna352Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications