EWM27223.1, cds3516 (CDS) Nannochloropsis gaditana

Overview
NameEWM27223.1
Unique Namecds3516
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:605509..606933 -

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Properties
Property NameValue
Protein idEWM27223.1
ProductArmadillo-like helical
Orig transcript idgnl|cribi|Naga_100010g83.6193.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:605509..606933 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
Homology
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BLAST of EWM27223.1 vs. NCBI_GenBank
Match: gi|585109403|gb|EWM27223.1| (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 979.548 bits (2531), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0 
Query:    1 MNDKNHNSAFLGTNSFEQSESLCRGVLDPEAEFDIEELGPATRSIGVSSGPTPVQTLPSHYNRHQGAYLYRDGVGTGGNDGDGDKHVECTPPLTIPFMPQKQHQRADYLLSSKLRSNDAVDMIPAKLVAPNLPFETSLFPLERCHYYTNKPTPELFSDIQVALKEKAVVFKFVPGKFKFSCEYRTGVNNVRFVCRAYFVPEDGRTVVEFQRRSGCCIVCAKVVDAVRSTLLARECNSEALPISIRPFKPKPLAASACLVQEEGESSAKVERARQEAQQCKLMRDLQDCLAQGRDDVLTDFAKVLIPLSQLAPEHLLGQPSHAELLAALGRHEIQSTRLSALVCLANLAAACFPQSGEGLSSVPFLRRGVSTDTEDDNPDVETGEEPAPSAGDVCAWFEDVLETIINALQSKFGPRSDAHVRREAARALWHLSKESFARTAAARQVLESCVSGDAEEDHVLQEYVRGALEHMQFC 474
            MNDKNHNSAFLGTNSFEQSESLCRGVLDPEAEFDIEELGPATRSIGVSSGPTPVQTLPSHYNRHQGAYLYRDGVGTGGNDGDGDKHVECTPPLTIPFMPQKQHQRADYLLSSKLRSNDAVDMIPAKLVAPNLPFETSLFPLERCHYYTNKPTPELFSDIQVALKEKAVVFKFVPGKFKFSCEYRTGVNNVRFVCRAYFVPEDGRTVVEFQRRSGCCIVCAKVVDAVRSTLLARECNSEALPISIRPFKPKPLAASACLVQEEGESSAKVERARQEAQQCKLMRDLQDCLAQGRDDVLTDFAKVLIPLSQLAPEHLLGQPSHAELLAALGRHEIQSTRLSALVCLANLAAACFPQSGEGLSSVPFLRRGVSTDTEDDNPDVETGEEPAPSAGDVCAWFEDVLETIINALQSKFGPRSDAHVRREAARALWHLSKESFARTAAARQVLESCVSGDAEEDHVLQEYVRGALEHMQFC
Sbjct:    1 MNDKNHNSAFLGTNSFEQSESLCRGVLDPEAEFDIEELGPATRSIGVSSGPTPVQTLPSHYNRHQGAYLYRDGVGTGGNDGDGDKHVECTPPLTIPFMPQKQHQRADYLLSSKLRSNDAVDMIPAKLVAPNLPFETSLFPLERCHYYTNKPTPELFSDIQVALKEKAVVFKFVPGKFKFSCEYRTGVNNVRFVCRAYFVPEDGRTVVEFQRRSGCCIVCAKVVDAVRSTLLARECNSEALPISIRPFKPKPLAASACLVQEEGESSAKVERARQEAQQCKLMRDLQDCLAQGRDDVLTDFAKVLIPLSQLAPEHLLGQPSHAELLAALGRHEIQSTRLSALVCLANLAAACFPQSGEGLSSVPFLRRGVSTDTEDDNPDVETGEEPAPSAGDVCAWFEDVLETIINALQSKFGPRSDAHVRREAARALWHLSKESFARTAAARQVLESCVSGDAEEDHVLQEYVRGALEHMQFC 474
The following BLAST results are available for this feature:
BLAST of EWM27223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109403|gb|EWM27223.1|0.000e+0100.00Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3525rna3525Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications