EWM30339.1, cds351 (CDS) Nannochloropsis gaditana

Overview
NameEWM30339.1
Unique Namecds351
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:859845..859873 -
Alignment locationCM002455.1:859690..859787 -
Alignment locationCM002455.1:859445..859630 -
Alignment locationCM002455.1:859297..859367 -
Alignment locationCM002455.1:859170..859250 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30339.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g145.1856.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:859845..859873 -
CM002455.1supercontigCM002455.1:859690..859787 -
CM002455.1supercontigCM002455.1:859445..859630 -
CM002455.1supercontigCM002455.1:859297..859367 -
CM002455.1supercontigCM002455.1:859170..859250 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005282LC_transporter
Homology
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|585112998|gb|EWM30339.1| (hypothetical protein Naga_100003g145 [Nannochloropsis gaditana])

HSP 1 Score: 317.39 bits (812), Expect = 9.471e-110
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MTAYPVLMYYIIARFASRVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAVTPSKWKITFVGAVHKLYHRLMREGQNAYTLRISKKLSTTRTEIIIRFKASAFQES 154
            MTAYPVLMYYIIARFASRVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAVTPSKWKITFVGAVHKLYHRLMREGQNAYTLRISKKLSTTRTEIIIRFKASAFQES
Sbjct:    1 MTAYPVLMYYIIARFASRVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAVTPSKWKITFVGAVHKLYHRLMREGQNAYTLRISKKLSTTRTEIIIRFKASAFQES 154          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|676377799|ref|XP_009032178.1| (hypothetical protein AURANDRAFT_18435 [Aureococcus anophagefferens] >gi|323456637|gb|EGB12503.1| hypothetical protein AURANDRAFT_18435 [Aureococcus anophagefferens])

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0
Query:   18 RVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPT--SATAVTP 101
            R   +GW+I   ++L+F         G+ S LQL++DCA T DW GI G+  KF LG  SI FDLLFM+QH+VLYP   + TA  P
Sbjct:  191 RQSTVGWSI-HNILLDFA-------GGLLSTLQLVLDCADTRDWSGIVGDVAKFALGSISIVFDLLFMVQHYVLYPPKRAGTAHAP 268          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|875284436|gb|KMU78163.1| (hypothetical protein CISG_07003 [Coccidioides immitis RMSCC 3703])

HSP 1 Score: 71.2478 bits (173), Expect = 1.422e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   18 RVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPT 94
            R   +GW+I   ++L+F         GV S+LQL++D A+ +DW GI GN +K  LG  SI FDL+FM QH+++YP 
Sbjct:   79 RKSTVGWSIGQ-ILLDF-------SGGVLSILQLIIDSALEDDWSGITGNPIKLLLGNVSIFFDLIFMAQHYIIYPD 147          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|258566015|ref|XP_002583752.1| (conserved hypothetical protein [Uncinocarpus reesii 1704] >gi|237907453|gb|EEP81854.1| conserved hypothetical protein [Uncinocarpus reesii 1704])

HSP 1 Score: 72.0182 bits (175), Expect = 2.016e-12
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   18 RVFQIGWTICLFMILEFVFAALFGYSG-VFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAV 99
            R   IGW+I            LF +SG V S+LQL++D A+ +DW GI GN +K  LG  SI FDL+FM QH+++YP    A+
Sbjct:  150 RKSTIGWSIGQI---------LFDFSGGVLSILQLVIDSALEDDWSGITGNPIKLALGNVSIFFDLIFMAQHYIIYPDKRVAL 223          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|224013618|ref|XP_002296473.1| (hypothetical protein THAPSDRAFT_36686, partial [Thalassiosira pseudonana CCMP1335] >gi|220968825|gb|EED87169.1| hypothetical protein THAPSDRAFT_36686, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.0182 bits (175), Expect = 2.721e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:   17 SRVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSA 96
            SR   +GW + L +IL+          GV S+LQL+ DCA  +DW GI GN  K  L L +I FDL+F++QH++LYP S 
Sbjct:  174 SRKSTVGWNV-LNVILDLT-------GGVLSLLQLIGDCAGLSDWSGITGNPAKMALALVTICFDLIFLVQHYLLYPESG 245          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|1103685160|gb|OJD21231.1| (hypothetical protein ACJ73_07430 [Blastomyces percursus])

HSP 1 Score: 71.633 bits (174), Expect = 6.142e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 0
Query:   18 RVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLY 92
            R   IGW+I   ++L+F         GV SVLQLL+D A+ +DW GI GN +K  LG  SI FD++FM+QH+VLY
Sbjct:  203 RKSTIGWSISA-ILLDF-------SGGVLSVLQLLIDSALEDDWSGITGNPIKLLLGNVSIFFDVIFMLQHYVLY 269          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|729701982|emb|CEJ01169.1| (Putative Cystinosin [Rhizopus microsporus])

HSP 1 Score: 67.781 bits (164), Expect = 8.499e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 0
Query:    3 AYPVLMYYIIARFASRVFQIGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLY 92
            +Y  L+  +I     R   +GW+I   ++L+F         G  S+ QLL+D +++ DW G++G+ +K  LG+ SIAFD++FM+QHFV Y
Sbjct:   10 SYVKLLVSLIKYIPQRKSTLGWSIH-NILLDFT-------GGTLSITQLLLDASISGDWSGVSGDPVKLGLGVQSIAFDIIFMLQHFVWY 91          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|1032647147|gb|OAQ28449.1| (lysosomal cystine transporter [Mortierella elongata AG-77])

HSP 1 Score: 71.2478 bits (173), Expect = 9.348e-12
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   22 IGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAVTPSKWKITFVGAVHKLYHRLMREGQNAYT------LRISKKLSTTRTEI 142
            +GW+I   ++L+F         G  S+ QL++D  ++ DW GI+G+ +KF LG  SIAFDL+FM QHF+LY        P    +   G  H+    L+  G   Y+       R+S+  S    E+
Sbjct:  183 VGWSIH-NILLDFT-------GGALSIGQLVLDAYISGDWSGISGDPVKFGLGFLSIAFDLIFMTQHFILYRNRKDFYAPLS-MVENNGEAHESKKLLLSPGHRTYSSIQREDARVSRPASMKDLEL 300          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|1183373549|gb|ORX99256.1| (hypothetical protein K493DRAFT_212900 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   22 IGWTICLFMILEFVFAALFGYSGVFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATAV 99
            +GW+I   +IL+F         G+ S+ QLL+D AV NDW GI GN +K  LG  SI FDL+F  QH++LYP     +
Sbjct:  172 VGWSIH-NIILDFT-------GGILSIAQLLLDAAVANDWSGITGNPIKLGLGWVSILFDLVFFTQHYILYPDRTDPI 241          
BLAST of EWM30339.1 vs. NCBI_GenBank
Match: gi|1111875461|gb|OJJ47889.1| (hypothetical protein ASPZODRAFT_131484 [Penicilliopsis zonata CBS 506.65])

HSP 1 Score: 70.4774 bits (171), Expect = 1.334e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   18 RVFQIGWTICLFMILEFVFAALFGYSG-VFSVLQLLVDCAVTNDWGGINGNALKFYLGLFSIAFDLLFMIQHFVLYPTSATA 98
            R   IGW+I            LF  SG + S+LQL++D A+ NDW GI GN +KF LG  SI FD++F++QH++LY  ++ A
Sbjct:  192 RKSTIGWSIITI---------LFDLSGGILSLLQLVIDSALENDWSGITGNPVKFLLGNVSIFFDIIFIVQHYILYKNASEA 264          
The following BLAST results are available for this feature:
BLAST of EWM30339.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112998|gb|EWM30339.1|9.471e-110100.00hypothetical protein Naga_100003g145 [Nannochlorop... [more]
gi|676377799|ref|XP_009032178.1|1.603e-1347.67hypothetical protein AURANDRAFT_18435 [Aureococcus... [more]
gi|875284436|gb|KMU78163.1|1.422e-1244.16hypothetical protein CISG_07003 [Coccidioides immi... [more]
gi|258566015|ref|XP_002583752.1|2.016e-1244.58conserved hypothetical protein [Uncinocarpus reesi... [more]
gi|224013618|ref|XP_002296473.1|2.721e-1245.00hypothetical protein THAPSDRAFT_36686, partial [Th... [more]
gi|1103685160|gb|OJD21231.1|6.142e-1249.33hypothetical protein ACJ73_07430 [Blastomyces perc... [more]
gi|729701982|emb|CEJ01169.1|8.499e-1237.78Putative Cystinosin [Rhizopus microsporus][more]
gi|1032647147|gb|OAQ28449.1|9.348e-1233.07lysosomal cystine transporter [Mortierella elongat... [more]
gi|1183373549|gb|ORX99256.1|1.227e-1144.87hypothetical protein K493DRAFT_212900 [Basidiobolu... [more]
gi|1111875461|gb|OJJ47889.1|1.334e-1143.90hypothetical protein ASPZODRAFT_131484 [Penicillio... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna351rna351Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications