EWM27142.1, cds3479 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|585109322|gb|EWM27142.1| (nuclear transport [Nannochloropsis gaditana]) HSP 1 Score: 248.44 bits (633), Expect = 1.675e-83 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA Sbjct: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|219126843|ref|XP_002183658.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404895|gb|EEC44840.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 139.813 bits (351), Expect = 1.709e-40 Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120 MSA+EIA AF H+Y + D+N+ L +L++ +SM++FEGQQF G NI K+ G G++ H V+ DVQPS +P+ ++I V G +K+ G +NPLHF E FQLV+++PG YY+HN IFRLNY Sbjct: 1 MSAEEIAQAFVGHFYNSFDTNVDSLASLFQPSSMMSFEGQQFQGPENIINKLKGTGQVQHTVKSTDVQPSSNPNAILIFVTGSIKIGG-DNPLHFCEMFQLVSTAPGAYYVHNDIFRLNY 119
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|224001342|ref|XP_002290343.1| (hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335] >gi|220973765|gb|EED92095.1| hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 136.732 bits (343), Expect = 2.975e-39 Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120 MSA+E+A AF H+Y D+ + GL LY +SMLTFEGQQ G I K+ G+G++ H V+ D+QPS DP+ ++I V G +++ G +NPLHF EFF LV + PGQYY+HN +FRLNY Sbjct: 1 MSAEEVAKAFVAHFYQAFDTGVDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVGQVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGG-DNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|1210516345|dbj|GAX24680.1| (hypothetical protein FisN_4Hu238 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 1.572e-36 Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121 MSA+E+A AF HYY T DSN L L++ SM+TFEGQQF G +I K+ +G++ H+V+ DVQPS S ++I V G +++ G +NPLH+ E FQLV++SPG +Y+HN IFRLNY Sbjct: 1 MSAEEVANAFVNHYYNTFDSNPDQLMGLFQPNSMMTFEGQQFQGPQSIVGKLRQIGQVKHDVKSTDVQPSNTESAILIFVTGSIRIGG-DNPLHYCETFQLVSTSPGNFYVHNSIFRLNYG 120
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|301090727|ref|XP_002895567.1| (nuclear transport factor, putative [Phytophthora infestans T30-4] >gi|262097806|gb|EEY55858.1| nuclear transport factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 121.709 bits (304), Expect = 2.196e-33 Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120 MSA+E+A AF QHYY T D+N AGL +LY+D S L++EGQ G I KM L + H D+QPS + +II V G+++++ + NP+ F++ FQLVA PGQYYIHN +FRL Y Sbjct: 1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIVAKMQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|675199653|ref|XP_008908711.1| (hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >gi|566019592|gb|ETI42503.1| hypothetical protein F443_12381 [Phytophthora parasitica P1569] >gi|567956912|gb|ETK82525.1| hypothetical protein L915_12103 [Phytophthora parasitica] >gi|567985570|gb|ETL35909.1| hypothetical protein L916_12028 [Phytophthora parasitica] >gi|568014966|gb|ETL89143.1| hypothetical protein L917_11869 [Phytophthora parasitica] >gi|568045245|gb|ETM42401.1| hypothetical protein L914_11939 [Phytophthora parasitica] >gi|568091385|gb|ETN06209.1| hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >gi|570323169|gb|ETO71117.1| hypothetical protein F444_12481 [Phytophthora parasitica P1976] >gi|570946954|gb|ETP12211.1| hypothetical protein F441_12367 [Phytophthora parasitica CJ01A1] >gi|570979405|gb|ETP40348.1| hypothetical protein F442_12302 [Phytophthora parasitica P10297] >gi|970641137|gb|KUF83400.1| Nuclear transport factor 2 [Phytophthora nicotianae]) HSP 1 Score: 120.168 bits (300), Expect = 8.802e-33 Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120 MSA+E+A AF QHYY T D+N AGL +LY+D S L++EGQ G I K+ L + H D+QPS + +II V G+++++ + NP+ F++ FQLVA PGQYYIHN +FRL Y Sbjct: 1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIMAKLQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|302765867|ref|XP_002966354.1| (hypothetical protein SELMODRAFT_230884 [Selaginella moellendorffii] >gi|302792881|ref|XP_002978206.1| hypothetical protein SELMODRAFT_152345 [Selaginella moellendorffii] >gi|300154227|gb|EFJ20863.1| hypothetical protein SELMODRAFT_152345 [Selaginella moellendorffii] >gi|300165774|gb|EFJ32381.1| hypothetical protein SELMODRAFT_230884 [Selaginella moellendorffii]) HSP 1 Score: 119.398 bits (298), Expect = 2.257e-32 Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLG--KLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121 M D+++ AF HYY T D+N AGL +LY+DASMLTFEGQQF G NI+ K+ L + HN+ D QPS +++ V G ++L G+E+PL FS+ F LV ++ G ++ N IFRLNYA Sbjct: 4 MDPDQVSRAFVDHYYNTFDANRAGLVSLYQDASMLTFEGQQFQGAPNIANKLNSLPFQQCKHNISTVDCQPSGAHGGMLVFVSGILQLPGEEHPLKFSQMFHLVPTAEGSLFVLNDIFRLNYA 126
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|1193755588|ref|XP_020995183.1| (nuclear transport factor 2-like [Arachis duranensis]) HSP 1 Score: 117.857 bits (294), Expect = 8.742e-32 Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGL--GKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121 M AD +A AF +HYY T D+N AGL LY+D+S+LTFEGQ+ G NI K+ L + +H++ D QPS P+ +++ V G ++L G+++ L FS+ F L+ + G YY+ N IFRLNYA Sbjct: 1 MDADALAKAFVEHYYTTFDNNRAGLVNLYQDSSLLTFEGQKIQGAQNIVAKLTSLPFNQCLHSITTVDCQPSSAPNGMLVFVSGNLQLAGEQHALKFSQMFHLLPTPQGSYYVSNDIFRLNYA 123
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|695431334|ref|XP_009530658.1| (hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae] >gi|348673410|gb|EGZ13229.1| hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae]) HSP 1 Score: 117.087 bits (292), Expect = 1.338e-31 Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120 MSA+++A AF QHYY T D+N AGL +LY+ S +++EGQ G I K+ GL + H D+QPS + +II V G+++++ + NP+ F++ FQLVA PGQYYIHN +FRL Y Sbjct: 1 MSAEDVAKAFVQHYYTTFDTNRAGLASLYQGVSNMSWEGQMSTGQQAIMAKLQGLPAVRHEFPTVDIQPSTSGNAMIIFVQGKIQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|586718323|ref|XP_006848276.1| (nuclear transport factor 2 [Amborella trichopoda] >gi|548851582|gb|ERN09857.1| hypothetical protein AMTR_s00013p00078860 [Amborella trichopoda]) HSP 1 Score: 117.472 bits (293), Expect = 1.339e-31 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0 Query: 1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLG--KLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121 M D +A AF +HYY T D+N AGL +LY+D SMLTFEGQ+ G NI K+ L + H++ D QPS+ P+++I+ V G ++L G+++ L FS+ F L+ + YY+ N IFRLNYA Sbjct: 1 MDTDVVARAFVEHYYSTFDTNRAGLASLYQDNSMLTFEGQKVQGAQNIVTKLTSLPFQQCQHSITTIDSQPSVHPNSIIVFVSGNLQLAGEQHALKFSQMFHLLQTPQNSYYVLNDIFRLNYA 123 The following BLAST results are available for this feature:
BLAST of EWM27142.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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