EWM27142.1, cds3479 (CDS) Nannochloropsis gaditana

Overview
NameEWM27142.1
Unique Namecds3479
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:533855..533941 -
Alignment locationCM002461.1:533219..533497 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27142.1
Productnuclear transport
Orig transcript idgnl|cribi|Naga_100010g44.6112.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:533855..533941 -
CM002461.1supercontigCM002461.1:533219..533497 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005635nuclear envelope
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018222Nuclear_transport_factor_2_euk
IPR002075NTF2
Homology
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|585109322|gb|EWM27142.1| (nuclear transport [Nannochloropsis gaditana])

HSP 1 Score: 248.44 bits (633), Expect = 1.675e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
            MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA
Sbjct:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|219126843|ref|XP_002183658.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404895|gb|EEC44840.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 139.813 bits (351), Expect = 1.709e-40
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120
            MSA+EIA AF  H+Y + D+N+  L +L++ +SM++FEGQQF G  NI  K+ G G++ H V+  DVQPS +P+ ++I V G +K+ G +NPLHF E FQLV+++PG YY+HN IFRLNY
Sbjct:    1 MSAEEIAQAFVGHFYNSFDTNVDSLASLFQPSSMMSFEGQQFQGPENIINKLKGTGQVQHTVKSTDVQPSSNPNAILIFVTGSIKIGG-DNPLHFCEMFQLVSTAPGAYYVHNDIFRLNY 119          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|224001342|ref|XP_002290343.1| (hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335] >gi|220973765|gb|EED92095.1| hypothetical protein THAPSDRAFT_22822 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 136.732 bits (343), Expect = 2.975e-39
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120
            MSA+E+A AF  H+Y   D+ + GL  LY  +SMLTFEGQQ  G   I  K+ G+G++ H V+  D+QPS DP+ ++I V G +++ G +NPLHF EFF LV + PGQYY+HN +FRLNY
Sbjct:    1 MSAEEVAKAFVAHFYQAFDTGVDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVGQVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGG-DNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|1210516345|dbj|GAX24680.1| (hypothetical protein FisN_4Hu238 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 1.572e-36
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
            MSA+E+A AF  HYY T DSN   L  L++  SM+TFEGQQF G  +I  K+  +G++ H+V+  DVQPS   S ++I V G +++ G +NPLH+ E FQLV++SPG +Y+HN IFRLNY 
Sbjct:    1 MSAEEVANAFVNHYYNTFDSNPDQLMGLFQPNSMMTFEGQQFQGPQSIVGKLRQIGQVKHDVKSTDVQPSNTESAILIFVTGSIRIGG-DNPLHYCETFQLVSTSPGNFYVHNSIFRLNYG 120          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|301090727|ref|XP_002895567.1| (nuclear transport factor, putative [Phytophthora infestans T30-4] >gi|262097806|gb|EEY55858.1| nuclear transport factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 121.709 bits (304), Expect = 2.196e-33
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120
            MSA+E+A AF QHYY T D+N AGL +LY+D S L++EGQ   G   I  KM  L  + H     D+QPS   + +II V G+++++ + NP+ F++ FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIVAKMQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|675199653|ref|XP_008908711.1| (hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >gi|566019592|gb|ETI42503.1| hypothetical protein F443_12381 [Phytophthora parasitica P1569] >gi|567956912|gb|ETK82525.1| hypothetical protein L915_12103 [Phytophthora parasitica] >gi|567985570|gb|ETL35909.1| hypothetical protein L916_12028 [Phytophthora parasitica] >gi|568014966|gb|ETL89143.1| hypothetical protein L917_11869 [Phytophthora parasitica] >gi|568045245|gb|ETM42401.1| hypothetical protein L914_11939 [Phytophthora parasitica] >gi|568091385|gb|ETN06209.1| hypothetical protein PPTG_13975 [Phytophthora parasitica INRA-310] >gi|570323169|gb|ETO71117.1| hypothetical protein F444_12481 [Phytophthora parasitica P1976] >gi|570946954|gb|ETP12211.1| hypothetical protein F441_12367 [Phytophthora parasitica CJ01A1] >gi|570979405|gb|ETP40348.1| hypothetical protein F442_12302 [Phytophthora parasitica P10297] >gi|970641137|gb|KUF83400.1| Nuclear transport factor 2 [Phytophthora nicotianae])

HSP 1 Score: 120.168 bits (300), Expect = 8.802e-33
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120
            MSA+E+A AF QHYY T D+N AGL +LY+D S L++EGQ   G   I  K+  L  + H     D+QPS   + +II V G+++++ + NP+ F++ FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEEVAKAFVQHYYTTFDTNRAGLASLYQDVSNLSWEGQMSTGQQAIMAKLQALPAVRHEYPTVDIQPSTSGNAMIIFVQGKMQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|302765867|ref|XP_002966354.1| (hypothetical protein SELMODRAFT_230884 [Selaginella moellendorffii] >gi|302792881|ref|XP_002978206.1| hypothetical protein SELMODRAFT_152345 [Selaginella moellendorffii] >gi|300154227|gb|EFJ20863.1| hypothetical protein SELMODRAFT_152345 [Selaginella moellendorffii] >gi|300165774|gb|EFJ32381.1| hypothetical protein SELMODRAFT_230884 [Selaginella moellendorffii])

HSP 1 Score: 119.398 bits (298), Expect = 2.257e-32
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLG--KLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
            M  D+++ AF  HYY T D+N AGL +LY+DASMLTFEGQQF G  NI+ K+  L   +  HN+   D QPS     +++ V G ++L G+E+PL FS+ F LV ++ G  ++ N IFRLNYA
Sbjct:    4 MDPDQVSRAFVDHYYNTFDANRAGLVSLYQDASMLTFEGQQFQGAPNIANKLNSLPFQQCKHNISTVDCQPSGAHGGMLVFVSGILQLPGEEHPLKFSQMFHLVPTAEGSLFVLNDIFRLNYA 126          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|1193755588|ref|XP_020995183.1| (nuclear transport factor 2-like [Arachis duranensis])

HSP 1 Score: 117.857 bits (294), Expect = 8.742e-32
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGL--GKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
            M AD +A AF +HYY T D+N AGL  LY+D+S+LTFEGQ+  G  NI  K+  L   + +H++   D QPS  P+ +++ V G ++L G+++ L FS+ F L+ +  G YY+ N IFRLNYA
Sbjct:    1 MDADALAKAFVEHYYTTFDNNRAGLVNLYQDSSLLTFEGQKIQGAQNIVAKLTSLPFNQCLHSITTVDCQPSSAPNGMLVFVSGNLQLAGEQHALKFSQMFHLLPTPQGSYYVSNDIFRLNYA 123          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|695431334|ref|XP_009530658.1| (hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae] >gi|348673410|gb|EGZ13229.1| hypothetical protein PHYSODRAFT_286573 [Phytophthora sojae])

HSP 1 Score: 117.087 bits (292), Expect = 1.338e-31
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLGKLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNY 120
            MSA+++A AF QHYY T D+N AGL +LY+  S +++EGQ   G   I  K+ GL  + H     D+QPS   + +II V G+++++ + NP+ F++ FQLVA  PGQYYIHN +FRL Y
Sbjct:    1 MSAEDVAKAFVQHYYTTFDTNRAGLASLYQGVSNMSWEGQMSTGQQAIMAKLQGLPAVRHEFPTVDIQPSTSGNAMIIFVQGKIQIE-ENNPIQFTQVFQLVAHQPGQYYIHNDVFRLQY 119          
BLAST of EWM27142.1 vs. NCBI_GenBank
Match: gi|586718323|ref|XP_006848276.1| (nuclear transport factor 2 [Amborella trichopoda] >gi|548851582|gb|ERN09857.1| hypothetical protein AMTR_s00013p00078860 [Amborella trichopoda])

HSP 1 Score: 117.472 bits (293), Expect = 1.339e-31
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:    1 MSADEIAGAFAQHYYGTLDSNIAGLGALYRDASMLTFEGQQFMGGTNISQKMAGLG--KLVHNVQRFDVQPSLDPSNLIIAVVGQVKLDGQENPLHFSEFFQLVASSPGQYYIHNQIFRLNYA 121
            M  D +A AF +HYY T D+N AGL +LY+D SMLTFEGQ+  G  NI  K+  L   +  H++   D QPS+ P+++I+ V G ++L G+++ L FS+ F L+ +    YY+ N IFRLNYA
Sbjct:    1 MDTDVVARAFVEHYYSTFDTNRAGLASLYQDNSMLTFEGQKVQGAQNIVTKLTSLPFQQCQHSITTIDSQPSVHPNSIIVFVSGNLQLAGEQHALKFSQMFHLLQTPQNSYYVLNDIFRLNYA 123          
The following BLAST results are available for this feature:
BLAST of EWM27142.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109322|gb|EWM27142.1|1.675e-83100.00nuclear transport [Nannochloropsis gaditana][more]
gi|219126843|ref|XP_002183658.1|1.709e-4052.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224001342|ref|XP_002290343.1|2.975e-3951.67hypothetical protein THAPSDRAFT_22822 [Thalassiosi... [more]
gi|1210516345|dbj|GAX24680.1|1.572e-3651.24hypothetical protein FisN_4Hu238 [Fistulifera sola... [more]
gi|301090727|ref|XP_002895567.1|2.196e-3349.17nuclear transport factor, putative [Phytophthora i... [more]
gi|675199653|ref|XP_008908711.1|8.802e-3348.33hypothetical protein PPTG_13975 [Phytophthora para... [more]
gi|302765867|ref|XP_002966354.1|2.257e-3247.97hypothetical protein SELMODRAFT_230884 [Selaginell... [more]
gi|1193755588|ref|XP_020995183.1|8.742e-3245.53nuclear transport factor 2-like [Arachis duranensi... [more]
gi|695431334|ref|XP_009530658.1|1.338e-3146.67hypothetical protein PHYSODRAFT_286573 [Phytophtho... [more]
gi|586718323|ref|XP_006848276.1|1.339e-3145.53nuclear transport factor 2 [Amborella trichopoda] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3488rna3488Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications