EWM30209.1, cds345 (CDS) Nannochloropsis gaditana

Overview
NameEWM30209.1
Unique Namecds345
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:850018..850328 -
Alignment locationCM002455.1:848289..849876 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30209.1
Productdna repair protein
Orig transcript idgnl|cribi|Naga_100003g151.1726.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:850018..850328 -
CM002455.1supercontigCM002455.1:848289..849876 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0046872metal ion binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001876Znf_RanBP2
IPR001841Znf_RING
IPR003034SAP_dom
Homology
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|585112868|gb|EWM30209.1| (dna repair protein [Nannochloropsis gaditana])

HSP 1 Score: 1318.14 bits (3410), Expect = 0.000e+0
Identity = 632/632 (100.00%), Postives = 632/632 (100.00%), Query Frame = 0
Query:    1 MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY 632
            MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY
Sbjct:    1 MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY 632          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|695381487|ref|XP_009517102.1| (hypothetical protein PHYSODRAFT_441337, partial [Phytophthora sojae] >gi|348690013|gb|EGZ29827.1| hypothetical protein PHYSODRAFT_441337, partial [Phytophthora sojae])

HSP 1 Score: 79.7221 bits (195), Expect = 1.247e-12
Identity = 72/256 (28.12%), Postives = 118/256 (46.09%), Query Frame = 0
Query:   64 DMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAA-RGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHP--GYHNVKEKGLRQELWAMGMMTSGK-KDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKE----VEEKVRARS---------NVGTGSMA 302
            DM ++W    +  AQ    E+HLRC IC  F    +   C HTFCS CVR ++     +  CPQCK              +PC S D    R  +++  ALL   FE     +K E   R + G +A S  N     +    RG      SK      +R P   Y  +++K +R+ L ++ +    K +D+++  H+ ++ L+ A+AD V+    ++ RE+VV+     +++K +A +         N G+G+ A
Sbjct:    8 DMMDEWEWPANCKAQR-EMENHLRCQICGDFFHGPVLLPCSHTFCSACVRRFMQSKGTNACCPQCK--------------QPCASRDLVPNRALEQV--ALL---FE----KSKPELLKRLQGGASAPSSANSTPNTESGKTRG-----KSKAKQDKPERMPLVSYSVMRDKEVRKLLDSINVRVPTKNRDEIIQIHKEYVLLSNAQADSVIPKSTSQLREEVVRNHYARIQQKAKADAFKRSHSGGENAGSGNAA 234          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|667791685|ref|XP_007874980.1| (DNA repair protein rad18 [Pneumocystis murina B123] >gi|470317035|gb|EMR08765.1| DNA repair protein rad18 [Pneumocystis murina B123])

HSP 1 Score: 72.0182 bits (175), Expect = 3.328e-10
Identity = 58/213 (27.23%), Postives = 88/213 (41.31%), Query Frame = 0
Query:   68 DWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRT-------GRNADSDQNGRR---ALDDSHQRGLDHFWASKQWSGALKRHP--GYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEAD 268
            DW+   S+  ++A  E  LRC IC   ++T +   C HTFCS+C+R  L +    Q CP C+   + N      RL+   S++     F+ +R  L+         + K+       T        ++ D D+        L+      L    + K    A  R P   Y  + E  LR EL ++G+  SG K  L  RH  +I L  A  D
Sbjct:    9 DWI--SSMLPEMAVLEEVLRCRICRDLMQTPLITGCCHTFCSLCIRRCLSQK---QQCPLCRQPEQEN------RLRRNTSIEEVIEIFERIRPGLMALANPLSNTEIKLSNTDSIPTIVKCPVCYQSVDYDKIHMHLDICLNQKSNTSLQTEISPKTIPHAYSRLPKLNYALLSESKLRSELKSLGLKISGDKAMLQRRHTEWINLWNANID 210          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183486871|gb|ORZ10595.1| (hypothetical protein BCR41DRAFT_338699 [Lobosporangium transversale])

HSP 1 Score: 73.559 bits (179), Expect = 4.742e-10
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 0
Query:   66 PEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEA 170
            P DW    +  A L   +SHLRCPIC + L  A+  +C H FCS C+R  L +     NCP C+      I     +++  ++LD  A  FK+ R  LLR + E+
Sbjct:    8 PSDW---PTEYASLREIDSHLRCPICKEMLRAAVMLQCHHNFCSECIRRHLDK---ESNCPACR------IPTSTSQMRRNVALDEIANNFKDCRSKLLRILMES 100          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183345717|gb|ORX74583.1| (hypothetical protein DL89DRAFT_264422 [Linderina pennispora])

HSP 1 Score: 69.707 bits (169), Expect = 3.759e-9
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0
Query:   60 EGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMA-AECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
            + +++ P DW    +  A L   +  LRCPIC ++L+TAMA A CGHTFCS+CVR  L +      CP C         L +  L+P   +DS  + FK+ R  LL
Sbjct:    2 DTDIEDPTDW---PAEFAHLRETDQLLRCPICKEYLDTAMASANCGHTFCSLCVRRCLSQ---KTQCPMCHDQ------LTESDLQPSRLIDSLVKSFKQGRRQLL 95          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183373748|gb|ORX99446.1| (hypothetical protein K493DRAFT_335740 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 68.9366 bits (167), Expect = 4.941e-9
Identity = 81/318 (25.47%), Postives = 137/318 (43.08%), Query Frame = 0
Query:   63 LDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAM-AAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAV------FEAGGCDAKIEEEAR----QRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPG--YHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVE--EKVRARSNVGTGSMARAPVNVETLSQHEGYKI----MIKEMRRRQKE-------QKRRQDGIKLTSDDDA-LEDSINS 353
            L+ P +W        +L   +  LRCPIC +FL+TAM    C H FCS+C+R  L   +    CP C+ + + N      +LK  ++LD   + F   R  +L  +       E+      I EE      Q+T RN +  ++   +         D    S+     L++ P   Y+ + +K LR+ L  +G+ + G K  +  RH  ++ L  A  D   L    ++   ++KE+   EK+    +  + S      + E L+  E Y      +I+    ++KE       Q +RQ    +  DD+  LED+ +S
Sbjct:    5 LEDPSEWP-----IPELEEIDFRLRCPICKEFLQTAMFFPNCSHNFCSLCIRRSL---QLEHICPVCRESAQEN------QLKNNLTLDGIVQAFTSCRAKVLSIIKSKDEATESTFTSETISEETHATRSQQTQRNENPSESSDSSAFSEPIDSKDPIGRSE-----LQKLPKLCYNIMTDKQLRKVLKELGIPSHGDKAAMQRRHTEYLNLYNANCDSTNL----KSTATLLKELRNWEKIHGSRSPQSKSFKNVSQD-ELLAHAEKYSSEFDKLIQSATPKRKEAPVGDVAQTKRQCSSAVIEDDETDLEDASHS 298          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|213402625|ref|XP_002172085.1| (Rad18 Rhp18 [Schizosaccharomyces japonicus yFS275] >gi|212000132|gb|EEB05792.1| Rad18 Rhp18 [Schizosaccharomyces japonicus yFS275])

HSP 1 Score: 69.707 bits (169), Expect = 5.090e-9
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0
Query:   79 LARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
            L  FES LRCPIC  F    +   C H+FCS C+R +L   +DH  CP C++ ++      + RL+  + ++    GF +LR +LL
Sbjct:   19 LTSFESLLRCPICHDFFSGPLITSCCHSFCSYCIRCYL---KDHSICPICRSEQQ------ESRLRKNLVVEELVEGFNKLRSSLL 95          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|45184872|ref|NP_982590.1| (AAR049Cp [Eremothecium gossypii ATCC 10895] >gi|74695775|sp|Q75EN0.1|RAD18_ASHGO RecName: Full=Postreplication repair E3 ubiquitin-protein ligase RAD18; AltName: Full=RING-type E3 ubiquitin transferase RAD18 >gi|44980481|gb|AAS50414.1| AAR049Cp [Ashbya gossypii ATCC 10895] >gi|374105789|gb|AEY94700.1| FAAR049Cp [Eremothecium gossypii FDAG1])

HSP 1 Score: 70.0922 bits (170), Expect = 5.295e-9
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0
Query:   66 PEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAV 167
            P D+  AG+   +LA  +S LRC IC   L+T +  +CGHTFCS+C+R++L +      CP C A  + N+ L K+ L     +   A  + ELR  LL  V
Sbjct:   12 PSDF--AGTTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNK---ESRCPLCLAELRQNM-LQKEFL-----VGELAACYMELRARLLETV 102          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|156049181|ref|XP_001590557.1| (hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980] >gi|154692696|gb|EDN92434.1| hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980 UF-70] >gi|1095455887|gb|APA12842.1| hypothetical protein sscle_10g076120 [Sclerotinia sclerotiorum 1980 UF-70])

HSP 1 Score: 70.0922 bits (170), Expect = 5.954e-9
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0
Query:   68 DWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
            DWL  G+  +QLA  +S LRC +C  F  T M   C HTFCS+C+R  L    +   CP C++N +      + +LKP  +++     FK  R A L
Sbjct:   46 DWL--GTPLSQLADVDSLLRCQVCKDFFTTPMITSCSHTFCSLCIRRCLN---NDSKCPTCRSNDQ------EIKLKPNAAIEDLVEAFKRARPAAL 131          
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|761761164|emb|CEP61123.1| (LALA0S02e07228g1_1 [Lachancea lanzarotensis])

HSP 1 Score: 68.9366 bits (167), Expect = 1.067e-8
Identity = 44/143 (30.77%), Postives = 67/143 (46.85%), Query Frame = 0
Query:   61 GNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL--------RAVFEAGGCDAKIEEEARQRTGRNADSDQNG 195
             N+  P D+++  ++  +L   ++ LRC IC  FL+T +   CGHTFCS+C+R++L R    Q CP C A       L +  L+    ++  A  +  +R  LL        R    AG     + E+  QR   N    QNG
Sbjct:   12 SNVTDPRDFVK--TVIPELQDTDTLLRCHICKDFLKTPVLTPCGHTFCSLCIREYLNR---EQKCPLCLAE------LRESMLRSEFLVNEIAASYTHVRAKLLEFLSLEREREAQSAGNSSCMVIEDGHQRNSPN----QNG 139          
The following BLAST results are available for this feature:
BLAST of EWM30209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112868|gb|EWM30209.1|0.000e+0100.00dna repair protein [Nannochloropsis gaditana][more]
gi|695381487|ref|XP_009517102.1|1.247e-1228.13hypothetical protein PHYSODRAFT_441337, partial [P... [more]
gi|667791685|ref|XP_007874980.1|3.328e-1027.23DNA repair protein rad18 [Pneumocystis murina B123... [more]
gi|1183486871|gb|ORZ10595.1|4.742e-1036.19hypothetical protein BCR41DRAFT_338699 [Lobosporan... [more]
gi|1183345717|gb|ORX74583.1|3.759e-938.68hypothetical protein DL89DRAFT_264422 [Linderina p... [more]
gi|1183373748|gb|ORX99446.1|4.941e-925.47hypothetical protein K493DRAFT_335740 [Basidiobolu... [more]
gi|213402625|ref|XP_002172085.1|5.090e-937.21Rad18 Rhp18 [Schizosaccharomyces japonicus yFS275]... [more]
gi|45184872|ref|NP_982590.1|5.295e-938.24AAR049Cp [Eremothecium gossypii ATCC 10895] >gi|74... [more]
gi|156049181|ref|XP_001590557.1|5.954e-937.11hypothetical protein SS1G_08297 [Sclerotinia scler... [more]
gi|761761164|emb|CEP61123.1|1.067e-830.77LALA0S02e07228g1_1 [Lachancea lanzarotensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna345rna345Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications