EWM30209.1, cds345 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|585112868|gb|EWM30209.1| (dna repair protein [Nannochloropsis gaditana]) HSP 1 Score: 1318.14 bits (3410), Expect = 0.000e+0 Identity = 632/632 (100.00%), Postives = 632/632 (100.00%), Query Frame = 0
Query: 1 MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY 632
MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY
Sbjct: 1 MFTAGFSKIRLGHVLTVSFSHTCSDSVTKQAADKAKLLQLHLALPSTTREVNCQALYMAEGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPGYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVEEKVRARSNVGTGSMARAPVNVETLSQHEGYKIMIKEMRRRQKEQKRRQDGIKLTSDDDALEDSINSNTCKRKDIELERLETKEWKPERGVQKAKYAAAIAICGANRGNEQDLGGSQNGDVRQTKSDALRTDLSSPSGHQLVGKDDDEDVMHLQTVKSETSRSIDMKRRQYSKDDEVNYKQRRKSVNTLTACASRWICQACTLNNAGHALNCAACNVPRRAFITSTTSMKTVKAVQENLLHEALQHKSRQVSDAMVIFDEGVRQSAGKAMAGVDNLGVRLRRVKPASGGLAGFSYQISDEVSQAQHEDEEITEWEGDSVKSEEYDKGWNENSMRVRASPKAESPSY 632
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|695381487|ref|XP_009517102.1| (hypothetical protein PHYSODRAFT_441337, partial [Phytophthora sojae] >gi|348690013|gb|EGZ29827.1| hypothetical protein PHYSODRAFT_441337, partial [Phytophthora sojae]) HSP 1 Score: 79.7221 bits (195), Expect = 1.247e-12 Identity = 72/256 (28.12%), Postives = 118/256 (46.09%), Query Frame = 0
Query: 64 DMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAA-RGFKELRGALLRAVFEAGGCDAKIEEEARQRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHP--GYHNVKEKGLRQELWAMGMMTSGK-KDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKE----VEEKVRARS---------NVGTGSMA 302
DM ++W + AQ E+HLRC IC F + C HTFCS CVR ++ + CPQCK +PC S D R +++ ALL FE +K E R + G +A S N + RG SK +R P Y +++K +R+ L ++ + K +D+++ H+ ++ L+ A+AD V+ ++ RE+VV+ +++K +A + N G+G+ A
Sbjct: 8 DMMDEWEWPANCKAQR-EMENHLRCQICGDFFHGPVLLPCSHTFCSACVRRFMQSKGTNACCPQCK--------------QPCASRDLVPNRALEQV--ALL---FE----KSKPELLKRLQGGASAPSSANSTPNTESGKTRG-----KSKAKQDKPERMPLVSYSVMRDKEVRKLLDSINVRVPTKNRDEIIQIHKEYVLLSNAQADSVIPKSTSQLREEVVRNHYARIQQKAKADAFKRSHSGGENAGSGNAA 234
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|667791685|ref|XP_007874980.1| (DNA repair protein rad18 [Pneumocystis murina B123] >gi|470317035|gb|EMR08765.1| DNA repair protein rad18 [Pneumocystis murina B123]) HSP 1 Score: 72.0182 bits (175), Expect = 3.328e-10 Identity = 58/213 (27.23%), Postives = 88/213 (41.31%), Query Frame = 0
Query: 68 DWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEAGGCDAKIEEEARQRT-------GRNADSDQNGRR---ALDDSHQRGLDHFWASKQWSGALKRHP--GYHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEAD 268
DW+ S+ ++A E LRC IC ++T + C HTFCS+C+R L + Q CP C+ + N RL+ S++ F+ +R L+ + K+ T ++ D D+ L+ L + K A R P Y + E LR EL ++G+ SG K L RH +I L A D
Sbjct: 9 DWI--SSMLPEMAVLEEVLRCRICRDLMQTPLITGCCHTFCSLCIRRCLSQK---QQCPLCRQPEQEN------RLRRNTSIEEVIEIFERIRPGLMALANPLSNTEIKLSNTDSIPTIVKCPVCYQSVDYDKIHMHLDICLNQKSNTSLQTEISPKTIPHAYSRLPKLNYALLSESKLRSELKSLGLKISGDKAMLQRRHTEWINLWNANID 210
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183486871|gb|ORZ10595.1| (hypothetical protein BCR41DRAFT_338699 [Lobosporangium transversale]) HSP 1 Score: 73.559 bits (179), Expect = 4.742e-10 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 0
Query: 66 PEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAVFEA 170
P DW + A L +SHLRCPIC + L A+ +C H FCS C+R L + NCP C+ I +++ ++LD A FK+ R LLR + E+
Sbjct: 8 PSDW---PTEYASLREIDSHLRCPICKEMLRAAVMLQCHHNFCSECIRRHLDK---ESNCPACR------IPTSTSQMRRNVALDEIANNFKDCRSKLLRILMES 100
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183345717|gb|ORX74583.1| (hypothetical protein DL89DRAFT_264422 [Linderina pennispora]) HSP 1 Score: 69.707 bits (169), Expect = 3.759e-9 Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0
Query: 60 EGNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMA-AECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
+ +++ P DW + A L + LRCPIC ++L+TAMA A CGHTFCS+CVR L + CP C L + L+P +DS + FK+ R LL
Sbjct: 2 DTDIEDPTDW---PAEFAHLRETDQLLRCPICKEYLDTAMASANCGHTFCSLCVRRCLSQ---KTQCPMCHDQ------LTESDLQPSRLIDSLVKSFKQGRRQLL 95
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|1183373748|gb|ORX99446.1| (hypothetical protein K493DRAFT_335740 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 68.9366 bits (167), Expect = 4.941e-9 Identity = 81/318 (25.47%), Postives = 137/318 (43.08%), Query Frame = 0
Query: 63 LDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAM-AAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAV------FEAGGCDAKIEEEAR----QRTGRNADSDQNGRRALDDSHQRGLDHFWASKQWSGALKRHPG--YHNVKEKGLRQELWAMGMMTSGKKDDLVLRHQTFIKLAEAEADKVVLGRPTRTREQVVKEVE--EKVRARSNVGTGSMARAPVNVETLSQHEGYKI----MIKEMRRRQKE-------QKRRQDGIKLTSDDDA-LEDSINS 353
L+ P +W +L + LRCPIC +FL+TAM C H FCS+C+R L + CP C+ + + N +LK ++LD + F R +L + E+ I EE Q+T RN + ++ + D S+ L++ P Y+ + +K LR+ L +G+ + G K + RH ++ L A D L ++ ++KE+ EK+ + + S + E L+ E Y +I+ ++KE Q +RQ + DD+ LED+ +S
Sbjct: 5 LEDPSEWP-----IPELEEIDFRLRCPICKEFLQTAMFFPNCSHNFCSLCIRRSL---QLEHICPVCRESAQEN------QLKNNLTLDGIVQAFTSCRAKVLSIIKSKDEATESTFTSETISEETHATRSQQTQRNENPSESSDSSAFSEPIDSKDPIGRSE-----LQKLPKLCYNIMTDKQLRKVLKELGIPSHGDKAAMQRRHTEYLNLYNANCDSTNL----KSTATLLKELRNWEKIHGSRSPQSKSFKNVSQD-ELLAHAEKYSSEFDKLIQSATPKRKEAPVGDVAQTKRQCSSAVIEDDETDLEDASHS 298
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|213402625|ref|XP_002172085.1| (Rad18 Rhp18 [Schizosaccharomyces japonicus yFS275] >gi|212000132|gb|EEB05792.1| Rad18 Rhp18 [Schizosaccharomyces japonicus yFS275]) HSP 1 Score: 69.707 bits (169), Expect = 5.090e-9 Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0
Query: 79 LARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
L FES LRCPIC F + C H+FCS C+R +L +DH CP C++ ++ + RL+ + ++ GF +LR +LL
Sbjct: 19 LTSFESLLRCPICHDFFSGPLITSCCHSFCSYCIRCYL---KDHSICPICRSEQQ------ESRLRKNLVVEELVEGFNKLRSSLL 95
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|45184872|ref|NP_982590.1| (AAR049Cp [Eremothecium gossypii ATCC 10895] >gi|74695775|sp|Q75EN0.1|RAD18_ASHGO RecName: Full=Postreplication repair E3 ubiquitin-protein ligase RAD18; AltName: Full=RING-type E3 ubiquitin transferase RAD18 >gi|44980481|gb|AAS50414.1| AAR049Cp [Ashbya gossypii ATCC 10895] >gi|374105789|gb|AEY94700.1| FAAR049Cp [Eremothecium gossypii FDAG1]) HSP 1 Score: 70.0922 bits (170), Expect = 5.295e-9 Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 0
Query: 66 PEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALLRAV 167
P D+ AG+ +LA +S LRC IC L+T + +CGHTFCS+C+R++L + CP C A + N+ L K+ L + A + ELR LL V
Sbjct: 12 PSDF--AGTTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNK---ESRCPLCLAELRQNM-LQKEFL-----VGELAACYMELRARLLETV 102
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|156049181|ref|XP_001590557.1| (hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980] >gi|154692696|gb|EDN92434.1| hypothetical protein SS1G_08297 [Sclerotinia sclerotiorum 1980 UF-70] >gi|1095455887|gb|APA12842.1| hypothetical protein sscle_10g076120 [Sclerotinia sclerotiorum 1980 UF-70]) HSP 1 Score: 70.0922 bits (170), Expect = 5.954e-9 Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0
Query: 68 DWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL 164
DWL G+ +QLA +S LRC +C F T M C HTFCS+C+R L + CP C++N + + +LKP +++ FK R A L
Sbjct: 46 DWL--GTPLSQLADVDSLLRCQVCKDFFTTPMITSCSHTFCSLCIRRCLN---NDSKCPTCRSNDQ------EIKLKPNAAIEDLVEAFKRARPAAL 131
BLAST of EWM30209.1 vs. NCBI_GenBank
Match: gi|761761164|emb|CEP61123.1| (LALA0S02e07228g1_1 [Lachancea lanzarotensis]) HSP 1 Score: 68.9366 bits (167), Expect = 1.067e-8 Identity = 44/143 (30.77%), Postives = 67/143 (46.85%), Query Frame = 0
Query: 61 GNLDMPEDWLRAGSLGAQLARFESHLRCPICAKFLETAMAAECGHTFCSICVRDWLGRGEDHQNCPQCKANRKPNIVLYKDRLKPCMSLDSAARGFKELRGALL--------RAVFEAGGCDAKIEEEARQRTGRNADSDQNG 195
N+ P D+++ ++ +L ++ LRC IC FL+T + CGHTFCS+C+R++L R Q CP C A L + L+ ++ A + +R LL R AG + E+ QR N QNG
Sbjct: 12 SNVTDPRDFVK--TVIPELQDTDTLLRCHICKDFLKTPVLTPCGHTFCSLCIREYLNR---EQKCPLCLAE------LRESMLRSEFLVNEIAASYTHVRAKLLEFLSLEREREAQSAGNSSCMVIEDGHQRNSPN----QNG 139 The following BLAST results are available for this feature:
BLAST of EWM30209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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