EWM27252.1, cds3430 (CDS) Nannochloropsis gaditana

Overview
NameEWM27252.1
Unique Namecds3430
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:422914..423615 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27252.1
ProductProtein of unknown function DUF1772
Orig transcript idgnl|cribi|Naga_100038g37.7707.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:422914..423615 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013901DUF1772
Homology
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|585109433|gb|EWM27252.1| (Protein of unknown function DUF1772 [Nannochloropsis gaditana])

HSP 1 Score: 473.396 bits (1217), Expect = 7.144e-169
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG 233
            MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG
Sbjct:    1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG 233          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|567398697|ref|WP_024019368.1| (DUF1772 domain-containing protein [Sphingobium sp. C100] >gi|566044927|gb|ETI64243.1| hypothetical protein C100_08485 [Sphingobium sp. C100])

HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-16
Identity = 62/203 (30.54%), Postives = 86/203 (42.36%), Query Frame = 0
Query:   15 FILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTA 215
             I+      S+ LF GAA+YISLVEHPAR  L           G  ++         QW+ SY+RA P+Q   A++ GV G+   +  K+   W W  G VA+  N PFTLL ++P+NK L                            +   AD  SRR                  +L  WG+LH +R++LG    L+  A
Sbjct:    1 MIISLVALLSATLFTGAAIYISLVEHPARLGL---------DDGPLLQ---------QWQPSYKRALPIQSGLAVIGGVAGLLAAYFTKD---WRWVAGSVALLANWPFTLLVILPVNKRL-------------------------MAMDSHHADLESRR------------------MLIQWGKLHNIRSILGAVAMLLFAA 139          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1209329507|ref|WP_088367860.1| (DUF1772 domain-containing protein [Sphingomonas dokdonensis] >gi|1208000000|gb|OWK29417.1| hypothetical protein SPDO_24020 [Sphingomonas dokdonensis])

HSP 1 Score: 79.337 bits (194), Expect = 3.926e-15
Identity = 62/192 (32.29%), Postives = 81/192 (42.19%), Query Frame = 0
Query:   16 ILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGL 207
            I+       +ALF GAA YI+LVEHPAR  LA   L                  + QW+ SY RA P+Q   A+V G+ GM   + L     W  G  ++  N PFTLL +MP NK+L    +M   E+                                         P T+ LL  WG+LHAVR+VLG+
Sbjct:    3 IIAIVALTCAALFTGAAGYITLVEHPARLQLADGPL------------------LAQWKPSYDRALPIQSGLAIVGGLSGM-GAWYLSGTVLWVLGSLVLLANWPFTLLAIMPTNKQL----KMIRPEKAG---------------------------------------PPTRALLVSWGKLHAVRSVLGV 132          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1087112914|emb|SDE62581.1| (protein of unknown function [Belnapia rosea] >gi|1087119092|emb|SDB74690.1| protein of unknown function [Belnapia rosea])

HSP 1 Score: 78.9518 bits (193), Expect = 6.476e-15
Identity = 65/197 (32.99%), Postives = 86/197 (43.65%), Query Frame = 0
Query:   25 SALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILS 219
            + LFAGAALYIS+VEHPAR +L     D P               + QW+ SY+RA P+Q   A++ G  G+   +  +E   W W  G  L+  N PFT+L +MP+NK L     MA   QE  G   R+                                     LLR WG LH VR+VLG +  L+     L+
Sbjct:   11 AVLFAGAALYISIVEHPARMSLE----DAPL--------------LAQWQLSYKRALPIQAGLAMLGGAAGLLAWYGSRE---WQWMAGSLLLLANWPFTMLVIMPVNKRL-----MAMTPQEA-GARSRD-------------------------------------LLRRWGNLHGVRSVLGSAASLLFACGFLA 143          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1054933996|ref|WP_066690033.1| (DUF1772 domain-containing protein [Sphingomonas hankookensis] >gi|1017126050|gb|KZE14644.1| hypothetical protein AVT10_14425 [Sphingomonas hankookensis])

HSP 1 Score: 78.5666 bits (192), Expect = 8.319e-15
Identity = 61/186 (32.80%), Postives = 87/186 (46.77%), Query Frame = 0
Query:   30 GAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM-NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRL-WGQLHAVRAVLGLSGFLVL 213
            GAALYI+LVEHPAR +LA   +                  + QW++SY+RA P+Q   ALVAG+GG+   +VL++   WA  GG+  + N PFT+  L+PIN+          L     G  D                                   +  HLL L WG+LH VR++LG++G ++L
Sbjct:   16 GAALYITLVEHPARLSLAEEPM------------------LTQWQQSYRRALPIQSSLALVAGIGGLVAGWVLRD--GWAIAGGVAMLANWPFTVSALLPINR---------RLSPAIAGRGD-----------------------------------AHSHLLLLRWGRLHDVRSLLGVAGTVLL 137          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|814989621|gb|KKI19553.1| (hypothetical protein XM50_08570 [Sphingomonas sp. Ag1])

HSP 1 Score: 77.411 bits (189), Expect = 2.237e-14
Identity = 65/192 (33.85%), Postives = 83/192 (43.23%), Query Frame = 0
Query:   17 LEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLG 206
            L  A    + LFAGAALYISLVEHPAR  LA   L                  + QW+ SY+RA P+Q   A++ G  G+   +    +A W W  G  L+  N PFTLL +MP+NK L                            +V EA P SR +                 L+R WG+LH VR+ LG
Sbjct:    6 LATAALVLATLFAGAALYISLVEHPARLGLADGPL------------------LAQWQPSYKRALPIQSGLAVLGGAAGLIVGY---YSADWRWFAGSILLLANWPFTLLAIMPVNKRL-------------------------MAMQVGEAGPGSRAM-----------------LVR-WGKLHNVRSALG 133          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1175561220|ref|WP_082102919.1| (DUF1772 domain-containing protein [Sphingomonas sp. Ag1])

HSP 1 Score: 77.0258 bits (188), Expect = 2.521e-14
Identity = 65/192 (33.85%), Postives = 83/192 (43.23%), Query Frame = 0
Query:   17 LEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLG 206
            L  A    + LFAGAALYISLVEHPAR  LA   L                  + QW+ SY+RA P+Q   A++ G  G+   +    +A W W  G  L+  N PFTLL +MP+NK L                            +V EA P SR +                 L+R WG+LH VR+ LG
Sbjct:    4 LATAALVLATLFAGAALYISLVEHPARLGLADGPL------------------LAQWQPSYKRALPIQSGLAVLGGAAGLIVGY---YSADWRWFAGSILLLANWPFTLLAIMPVNKRL-------------------------MAMQVGEAGPGSRAM-----------------LVR-WGKLHNVRSALG 131          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|739628697|ref|WP_037485058.1| (DUF1772 domain-containing protein [Sphingomonas paucimobilis] >gi|612112718|gb|EZP70823.1| hypothetical protein BV96_03121 [Sphingomonas paucimobilis])

HSP 1 Score: 76.2554 bits (186), Expect = 5.015e-14
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 0
Query:   16 ILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKEL-GKRAEMAELEQE 145
            I+      S+ LF GAA YI+LVEHPAR  L     D P  +              QW+ SY+RA P+Q   A++ GV G+   ++ K+   W W  G VA+  N PFTLL + P+NK L      +A+ E  
Sbjct:    2 IISLVALLSATLFTGAAFYITLVEHPARLGLG----DGPMLQ--------------QWQPSYKRALPIQSGLAVIGGVAGLIAGYLTKD---WLWVAGSVALLANWPFTLLAIFPVNKRLMALNPRLADFESR 113          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1196465662|ref|WP_086130209.1| (hypothetical protein [Sphingomonas sp. IBVSS2] >gi|1190607363|gb|OSZ64975.1| hypothetical protein CAP40_14225 [Sphingomonas sp. IBVSS2])

HSP 1 Score: 76.2554 bits (186), Expect = 6.054e-14
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
Query:   15 FILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKEL 133
             I+       + LF GAALYI+LVEHP R  L    L                  + QW+ SY+RA P+Q   A++ GV G+   ++ K+   W W  G VA+  N PFTLL ++P+NK L
Sbjct:    1 MIISLVALLGATLFTGAALYITLVEHPTRLGLDDGPL------------------LQQWQPSYKRALPIQSGLAVIGGVAGLLAGYLTKD---WRWVAGSVALLANWPFTLLVILPVNKRL 100          
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|515750700|ref|WP_017183300.1| (DUF1772 domain-containing protein [Sphingobium xenophagum])

HSP 1 Score: 75.8702 bits (185), Expect = 8.443e-14
Identity = 61/192 (31.77%), Postives = 83/192 (43.23%), Query Frame = 0
Query:   24 SSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVL 213
            S+ LFAGAALYISLVEHPAR  L+ S                  +++ QW+ SY+RA P Q   A+  G+ G+   ++  +   + W  G +AM  N PFTL  + P+NK L       E ++ETRG                                          LLR WG LH VR+ LG +  L+ 
Sbjct:   11 SATLFAGAALYISLVEHPARLALSDS------------------ASLTQWQPSYKRALPFQSGLAVAGGLSGVICFYLTAD---FRWLAGSIAMLANWPFTLFIIFPVNKRL-LAIRPVEADRETRG------------------------------------------LLRKWGALHNVRSALGAAAVLLF 138          
The following BLAST results are available for this feature:
BLAST of EWM27252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109433|gb|EWM27252.1|7.144e-169100.00Protein of unknown function DUF1772 [Nannochlorops... [more]
gi|567398697|ref|WP_024019368.1|9.212e-1630.54DUF1772 domain-containing protein [Sphingobium sp.... [more]
gi|1209329507|ref|WP_088367860.1|3.926e-1532.29DUF1772 domain-containing protein [Sphingomonas do... [more]
gi|1087112914|emb|SDE62581.1|6.476e-1532.99protein of unknown function [Belnapia rosea] >gi|1... [more]
gi|1054933996|ref|WP_066690033.1|8.319e-1532.80DUF1772 domain-containing protein [Sphingomonas ha... [more]
gi|814989621|gb|KKI19553.1|2.237e-1433.85hypothetical protein XM50_08570 [Sphingomonas sp. ... [more]
gi|1175561220|ref|WP_082102919.1|2.521e-1433.85DUF1772 domain-containing protein [Sphingomonas sp... [more]
gi|739628697|ref|WP_037485058.1|5.015e-1436.84DUF1772 domain-containing protein [Sphingomonas pa... [more]
gi|1196465662|ref|WP_086130209.1|6.054e-1437.19hypothetical protein [Sphingomonas sp. IBVSS2] >gi... [more]
gi|515750700|ref|WP_017183300.1|8.443e-1431.77DUF1772 domain-containing protein [Sphingobium xen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3439rna3439Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications