EWM27252.1, cds3430 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|585109433|gb|EWM27252.1| (Protein of unknown function DUF1772 [Nannochloropsis gaditana]) HSP 1 Score: 473.396 bits (1217), Expect = 7.144e-169 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG 233
MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG
Sbjct: 1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVMIYG 233
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|567398697|ref|WP_024019368.1| (DUF1772 domain-containing protein [Sphingobium sp. C100] >gi|566044927|gb|ETI64243.1| hypothetical protein C100_08485 [Sphingobium sp. C100]) HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-16 Identity = 62/203 (30.54%), Postives = 86/203 (42.36%), Query Frame = 0
Query: 15 FILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTA 215
I+ S+ LF GAA+YISLVEHPAR L G ++ QW+ SY+RA P+Q A++ GV G+ + K+ W W G VA+ N PFTLL ++P+NK L + AD SRR +L WG+LH +R++LG L+ A
Sbjct: 1 MIISLVALLSATLFTGAAIYISLVEHPARLGL---------DDGPLLQ---------QWQPSYKRALPIQSGLAVIGGVAGLLAAYFTKD---WRWVAGSVALLANWPFTLLVILPVNKRL-------------------------MAMDSHHADLESRR------------------MLIQWGKLHNIRSILGAVAMLLFAA 139
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1209329507|ref|WP_088367860.1| (DUF1772 domain-containing protein [Sphingomonas dokdonensis] >gi|1208000000|gb|OWK29417.1| hypothetical protein SPDO_24020 [Sphingomonas dokdonensis]) HSP 1 Score: 79.337 bits (194), Expect = 3.926e-15 Identity = 62/192 (32.29%), Postives = 81/192 (42.19%), Query Frame = 0
Query: 16 ILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGL 207
I+ +ALF GAA YI+LVEHPAR LA L + QW+ SY RA P+Q A+V G+ GM + L W G ++ N PFTLL +MP NK+L +M E+ P T+ LL WG+LHAVR+VLG+
Sbjct: 3 IIAIVALTCAALFTGAAGYITLVEHPARLQLADGPL------------------LAQWKPSYDRALPIQSGLAIVGGLSGM-GAWYLSGTVLWVLGSLVLLANWPFTLLAIMPTNKQL----KMIRPEKAG---------------------------------------PPTRALLVSWGKLHAVRSVLGV 132
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1087112914|emb|SDE62581.1| (protein of unknown function [Belnapia rosea] >gi|1087119092|emb|SDB74690.1| protein of unknown function [Belnapia rosea]) HSP 1 Score: 78.9518 bits (193), Expect = 6.476e-15 Identity = 65/197 (32.99%), Postives = 86/197 (43.65%), Query Frame = 0
Query: 25 SALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILS 219
+ LFAGAALYIS+VEHPAR +L D P + QW+ SY+RA P+Q A++ G G+ + +E W W G L+ N PFT+L +MP+NK L MA QE G R+ LLR WG LH VR+VLG + L+ L+
Sbjct: 11 AVLFAGAALYISIVEHPARMSLE----DAPL--------------LAQWQLSYKRALPIQAGLAMLGGAAGLLAWYGSRE---WQWMAGSLLLLANWPFTMLVIMPVNKRL-----MAMTPQEA-GARSRD-------------------------------------LLRRWGNLHGVRSVLGSAASLLFACGFLA 143
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1054933996|ref|WP_066690033.1| (DUF1772 domain-containing protein [Sphingomonas hankookensis] >gi|1017126050|gb|KZE14644.1| hypothetical protein AVT10_14425 [Sphingomonas hankookensis]) HSP 1 Score: 78.5666 bits (192), Expect = 8.319e-15 Identity = 61/186 (32.80%), Postives = 87/186 (46.77%), Query Frame = 0
Query: 30 GAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM-NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRL-WGQLHAVRAVLGLSGFLVL 213
GAALYI+LVEHPAR +LA + + QW++SY+RA P+Q ALVAG+GG+ +VL++ WA GG+ + N PFT+ L+PIN+ L G D + HLL L WG+LH VR++LG++G ++L
Sbjct: 16 GAALYITLVEHPARLSLAEEPM------------------LTQWQQSYRRALPIQSSLALVAGIGGLVAGWVLRD--GWAIAGGVAMLANWPFTVSALLPINR---------RLSPAIAGRGD-----------------------------------AHSHLLLLRWGRLHDVRSLLGVAGTVLL 137
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|814989621|gb|KKI19553.1| (hypothetical protein XM50_08570 [Sphingomonas sp. Ag1]) HSP 1 Score: 77.411 bits (189), Expect = 2.237e-14 Identity = 65/192 (33.85%), Postives = 83/192 (43.23%), Query Frame = 0
Query: 17 LEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLG 206
L A + LFAGAALYISLVEHPAR LA L + QW+ SY+RA P+Q A++ G G+ + +A W W G L+ N PFTLL +MP+NK L +V EA P SR + L+R WG+LH VR+ LG
Sbjct: 6 LATAALVLATLFAGAALYISLVEHPARLGLADGPL------------------LAQWQPSYKRALPIQSGLAVLGGAAGLIVGY---YSADWRWFAGSILLLANWPFTLLAIMPVNKRL-------------------------MAMQVGEAGPGSRAM-----------------LVR-WGKLHNVRSALG 133
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1175561220|ref|WP_082102919.1| (DUF1772 domain-containing protein [Sphingomonas sp. Ag1]) HSP 1 Score: 77.0258 bits (188), Expect = 2.521e-14 Identity = 65/192 (33.85%), Postives = 83/192 (43.23%), Query Frame = 0
Query: 17 LEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGG--LVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLG 206
L A + LFAGAALYISLVEHPAR LA L + QW+ SY+RA P+Q A++ G G+ + +A W W G L+ N PFTLL +MP+NK L +V EA P SR + L+R WG+LH VR+ LG
Sbjct: 4 LATAALVLATLFAGAALYISLVEHPARLGLADGPL------------------LAQWQPSYKRALPIQSGLAVLGGAAGLIVGY---YSADWRWFAGSILLLANWPFTLLAIMPVNKRL-------------------------MAMQVGEAGPGSRAM-----------------LVR-WGKLHNVRSALG 131
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|739628697|ref|WP_037485058.1| (DUF1772 domain-containing protein [Sphingomonas paucimobilis] >gi|612112718|gb|EZP70823.1| hypothetical protein BV96_03121 [Sphingomonas paucimobilis]) HSP 1 Score: 76.2554 bits (186), Expect = 5.015e-14 Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 0
Query: 16 ILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKEL-GKRAEMAELEQE 145
I+ S+ LF GAA YI+LVEHPAR L D P + QW+ SY+RA P+Q A++ GV G+ ++ K+ W W G VA+ N PFTLL + P+NK L +A+ E
Sbjct: 2 IISLVALLSATLFTGAAFYITLVEHPARLGLG----DGPMLQ--------------QWQPSYKRALPIQSGLAVIGGVAGLIAGYLTKD---WLWVAGSVALLANWPFTLLAIFPVNKRLMALNPRLADFESR 113
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|1196465662|ref|WP_086130209.1| (hypothetical protein [Sphingomonas sp. IBVSS2] >gi|1190607363|gb|OSZ64975.1| hypothetical protein CAP40_14225 [Sphingomonas sp. IBVSS2]) HSP 1 Score: 76.2554 bits (186), Expect = 6.054e-14 Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
Query: 15 FILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKEL 133
I+ + LF GAALYI+LVEHP R L L + QW+ SY+RA P+Q A++ GV G+ ++ K+ W W G VA+ N PFTLL ++P+NK L
Sbjct: 1 MIISLVALLGATLFTGAALYITLVEHPTRLGLDDGPL------------------LQQWQPSYKRALPIQSGLAVIGGVAGLLAGYLTKD---WRWVAGSVALLANWPFTLLVILPVNKRL 100
BLAST of EWM27252.1 vs. NCBI_GenBank
Match: gi|515750700|ref|WP_017183300.1| (DUF1772 domain-containing protein [Sphingobium xenophagum]) HSP 1 Score: 75.8702 bits (185), Expect = 8.443e-14 Identity = 61/192 (31.77%), Postives = 83/192 (43.23%), Query Frame = 0
Query: 24 SSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAM--NVPFTLLCLMPINKELGKRAEMAELEQETRGTSDREEETKVEEEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVL 213
S+ LFAGAALYISLVEHPAR L+ S +++ QW+ SY+RA P Q A+ G+ G+ ++ + + W G +AM N PFTL + P+NK L E ++ETRG LLR WG LH VR+ LG + L+
Sbjct: 11 SATLFAGAALYISLVEHPARLALSDS------------------ASLTQWQPSYKRALPFQSGLAVAGGLSGVICFYLTAD---FRWLAGSIAMLANWPFTLFIIFPVNKRL-LAIRPVEADRETRG------------------------------------------LLRKWGALHNVRSALGAAAVLLF 138 The following BLAST results are available for this feature:
BLAST of EWM27252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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