EWM27243.1, cds3422 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|585109424|gb|EWM27243.1| (SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gaditana]) HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0 Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query: 1 MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK 365
MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK
Sbjct: 1 MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK 365
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|397580774|gb|EJK51700.1| (hypothetical protein THAOC_29105 [Thalassiosira oceanica]) HSP 1 Score: 70.8626 bits (172), Expect = 1.440e-9 Identity = 65/262 (24.81%), Postives = 106/262 (40.46%), Query Frame = 0
Query: 20 SGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGL-------ATLLDFFQNAHKHGRMADSENEVEPHL---DEFLAYYTLLQLHDVLSSGERREAGPCD-----------GDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREED-------RTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLEL 253
S + + R+IR++IL YLL + ++ G A+R+ L AT+ D + + +NE E + DE LAY LL V+ S E P G GW + + + ++ + + + PR WAL A + GN+ R+ RL N + L + + TF +LARC + I R + +++ + EK+S ++ RLL F + F GL L
Sbjct: 417 STVRCMQSRMIRYNILVLYLLNDLPKDKYEGKFGARALRTALTTYFNLSATIRDEYDKLLQLDSSNSMKNEYEEEVQTQDEILAYMALLHASGVIRSEETALPMPSGTEAAVALMEDAGSGWGAILSSYQKFVGKSAVMAAQ------------YPRLTWALDLASLVQEGNYQRYFRLMRNGPVALAQLNDQKQSTHATFTILARCCAVQSLQIVRLNQLRRYNQSFGKAEKVSGLDLARLLRFDDTCAALRFCDDAGLPL 666
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|1130209266|ref|XP_019754151.1| (PREDICTED: uncharacterized protein LOC109533306 [Dendroctonus ponderosae]) HSP 1 Score: 65.4698 bits (158), Expect = 8.126e-8 Identity = 61/256 (23.83%), Postives = 101/256 (39.45%), Query Frame = 0
Query: 3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGD-GWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMS---VDEVQRLLCFGNAKQTFDFMRLFGLELS 254
DR +RKDI Q L G+ + ++ RFHI + P VFD + + L TL + + G M P+ EF AY LL + CDG+ W +N +T +++ P ++ALQ A ++ +F +L R+ L C++ + F R +++E K + +S V E+ LL F + + T DFM+ FG+ ++
Sbjct: 353 DRTRGIRKDITQQALCSQGSVELVEQCARFHIHCSARFMGEDPSVFDQKINTENLTKCLQTLKYMYHDLELKGEMC-------PNEPEFRAYIILLNI--------------CDGNFMW-----------------EVQNLRTDIQKS----PEVKFALQVYSAFEKRHFVKFFKLI-----------RSTTYLNACILMRYFVQVRLQAIESLIKCFTPPKSISFYPVPEIAYLLLFDDFESTVDFMKTFGIGMN 555
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|478261316|gb|ENN80732.1| (hypothetical protein YQE_02840, partial [Dendroctonus ponderosae] >gi|546680352|gb|ERL90631.1| hypothetical protein D910_07978 [Dendroctonus ponderosae]) HSP 1 Score: 63.929 bits (154), Expect = 9.243e-8 Identity = 60/255 (23.53%), Postives = 102/255 (40.00%), Query Frame = 0
Query: 3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMS---VDEVQRLLCFGNAKQTFDFMRLFGLELS 254
DR +RKDI Q L G+ + ++ RFHI + P VFD + + L TL + + G M P+ EF AY LL + CDG+ ++ +N +T +++ P ++ALQ A ++ +F +L R+ L C++ + F R +++E K + +S V E+ LL F + + T DFM+ FG+ ++
Sbjct: 63 DRTRGIRKDITQQALCSQGSVELVEQCARFHIHCSARFMGEDPSVFDQKINTENLTKCLQTLKYMYHDLELKGEMC-------PNEPEFRAYIILLNI--------------CDGNFMWEV----------------QNLRTDIQKS----PEVKFALQVYSAFEKRHFVKFFKLI-----------RSTTYLNACILMRYFVQVRLQAIESLIKCFTPPKSISFYPVPEIAYLLLFDDFESTVDFMKTFGIGMN 265
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|971511504|dbj|GAQ86712.1| (hypothetical protein KFL_003060110 [Klebsormidium nitens]) HSP 1 Score: 62.7734 bits (151), Expect = 2.720e-7 Identity = 64/231 (27.71%), Postives = 94/231 (40.69%), Query Frame = 0
Query: 3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTE----QV---PPV---FDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKE 223
DRF A+R+D+ +Q A +++++ RFHIL Y L E QV PP F+ HM L + LA L + + H+ G + E E EF AYY L+Q + G D T L + L L+SCE T R F R AG++ RF RL L C++ FP R R++++ +K + +
Sbjct: 108 DRFRAIRQDLTLQHCVSPAAVRLHEQMARFHILSHYELCESSGPQVRASPPEEERFEPHMNLEQLSKTLAGLFQMYDDLHRKGGV---EFRTE---GEFRAYYILMQTA--------KSDGRVDAAAVTPLLMR----LRPAVLQSCEVCFTL---RAFCCAR------------AGDYVRFFRLAAGAS-----------YLQTCILHGAFPQVRSRALQVLNKASMKGQ 294 The following BLAST results are available for this feature:
BLAST of EWM27243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|