EWM27243.1, cds3422 (CDS) Nannochloropsis gaditana

Overview
NameEWM27243.1
Unique Namecds3422
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:402533..402661 -
Alignment locationCM002461.1:402408..402436 -
Alignment locationCM002461.1:402252..402303 -
Alignment locationCM002461.1:401279..402166 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27243.1
ProductSAC3/GANP/Nin1/mts3/eIF-3 p25
Orig transcript idgnl|cribi|Naga_100038g28.7698.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:402533..402661 -
CM002461.1supercontigCM002461.1:402408..402436 -
CM002461.1supercontigCM002461.1:402252..402303 -
CM002461.1supercontigCM002461.1:401279..402166 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005062SAC3/GANP/Nin1/mts3/eIF-3-p25
Homology
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|585109424|gb|EWM27243.1| (SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gaditana])

HSP 1 Score: 766.533 bits (1978), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK 365
            MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK
Sbjct:    1 MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQNAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGKIATEKLQELWKGMKKK 365          
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|397580774|gb|EJK51700.1| (hypothetical protein THAOC_29105 [Thalassiosira oceanica])

HSP 1 Score: 70.8626 bits (172), Expect = 1.440e-9
Identity = 65/262 (24.81%), Postives = 106/262 (40.46%), Query Frame = 0
Query:   20 SGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGL-------ATLLDFFQNAHKHGRMADSENEVEPHL---DEFLAYYTLLQLHDVLSSGERREAGPCD-----------GDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREED-------RTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLEL 253
            S  + +  R+IR++IL  YLL +     ++   G  A+R+ L       AT+ D +    +       +NE E  +   DE LAY  LL    V+ S E     P             G GW  +     + + ++ + + +             PR  WAL  A  +  GN+ R+ RL  N  + L + +        TF +LARC   +   I R   +  +++   + EK+S  ++ RLL F +      F    GL L
Sbjct:  417 STVRCMQSRMIRYNILVLYLLNDLPKDKYEGKFGARALRTALTTYFNLSATIRDEYDKLLQLDSSNSMKNEYEEEVQTQDEILAYMALLHASGVIRSEETALPMPSGTEAAVALMEDAGSGWGAILSSYQKFVGKSAVMAAQ------------YPRLTWALDLASLVQEGNYQRYFRLMRNGPVALAQLNDQKQSTHATFTILARCCAVQSLQIVRLNQLRRYNQSFGKAEKVSGLDLARLLRFDDTCAALRFCDDAGLPL 666          
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|1130209266|ref|XP_019754151.1| (PREDICTED: uncharacterized protein LOC109533306 [Dendroctonus ponderosae])

HSP 1 Score: 65.4698 bits (158), Expect = 8.126e-8
Identity = 61/256 (23.83%), Postives = 101/256 (39.45%), Query Frame = 0
Query:    3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGD-GWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMS---VDEVQRLLCFGNAKQTFDFMRLFGLELS 254
            DR   +RKDI  Q L   G+  + ++  RFHI        + P VFD  +    +   L TL   + +    G M        P+  EF AY  LL +              CDG+  W                   +N +T +++     P  ++ALQ   A    ++ +F +L            R+   L  C++ + F   R +++E   K     + +S   V E+  LL F + + T DFM+ FG+ ++
Sbjct:  353 DRTRGIRKDITQQALCSQGSVELVEQCARFHIHCSARFMGEDPSVFDQKINTENLTKCLQTLKYMYHDLELKGEMC-------PNEPEFRAYIILLNI--------------CDGNFMW-----------------EVQNLRTDIQKS----PEVKFALQVYSAFEKRHFVKFFKLI-----------RSTTYLNACILMRYFVQVRLQAIESLIKCFTPPKSISFYPVPEIAYLLLFDDFESTVDFMKTFGIGMN 555          
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|478261316|gb|ENN80732.1| (hypothetical protein YQE_02840, partial [Dendroctonus ponderosae] >gi|546680352|gb|ERL90631.1| hypothetical protein D910_07978 [Dendroctonus ponderosae])

HSP 1 Score: 63.929 bits (154), Expect = 9.243e-8
Identity = 60/255 (23.53%), Postives = 102/255 (40.00%), Query Frame = 0
Query:    3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMS---VDEVQRLLCFGNAKQTFDFMRLFGLELS 254
            DR   +RKDI  Q L   G+  + ++  RFHI        + P VFD  +    +   L TL   + +    G M        P+  EF AY  LL +              CDG+   ++                +N +T +++     P  ++ALQ   A    ++ +F +L            R+   L  C++ + F   R +++E   K     + +S   V E+  LL F + + T DFM+ FG+ ++
Sbjct:   63 DRTRGIRKDITQQALCSQGSVELVEQCARFHIHCSARFMGEDPSVFDQKINTENLTKCLQTLKYMYHDLELKGEMC-------PNEPEFRAYIILLNI--------------CDGNFMWEV----------------QNLRTDIQKS----PEVKFALQVYSAFEKRHFVKFFKLI-----------RSTTYLNACILMRYFVQVRLQAIESLIKCFTPPKSISFYPVPEIAYLLLFDDFESTVDFMKTFGIGMN 265          
BLAST of EWM27243.1 vs. NCBI_GenBank
Match: gi|971511504|dbj|GAQ86712.1| (hypothetical protein KFL_003060110 [Klebsormidium nitens])

HSP 1 Score: 62.7734 bits (151), Expect = 2.720e-7
Identity = 64/231 (27.71%), Postives = 94/231 (40.69%), Query Frame = 0
Query:    3 DRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTE----QV---PPV---FDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHLDEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVLEETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREEDRTFHVLARCLIFKLFPITRRRSMELWSKVMFQKE 223
            DRF A+R+D+ +Q      A  +++++ RFHIL  Y L E    QV   PP    F+ HM L  +   LA L   + + H+ G +   E   E    EF AYY L+Q          +  G  D    T L +     L    L+SCE   T    R F   R            AG++ RF RL                 L  C++   FP  R R++++ +K   + +
Sbjct:  108 DRFRAIRQDLTLQHCVSPAAVRLHEQMARFHILSHYELCESSGPQVRASPPEEERFEPHMNLEQLSKTLAGLFQMYDDLHRKGGV---EFRTE---GEFRAYYILMQTA--------KSDGRVDAAAVTPLLMR----LRPAVLQSCEVCFTL---RAFCCAR------------AGDYVRFFRLAAGAS-----------YLQTCILHGAFPQVRSRALQVLNKASMKGQ 294          
The following BLAST results are available for this feature:
BLAST of EWM27243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109424|gb|EWM27243.1|0.000e+0100.00SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gad... [more]
gi|397580774|gb|EJK51700.1|1.440e-924.81hypothetical protein THAOC_29105 [Thalassiosira oc... [more]
gi|1130209266|ref|XP_019754151.1|8.126e-823.83PREDICTED: uncharacterized protein LOC109533306 [D... [more]
gi|478261316|gb|ENN80732.1|9.243e-823.53hypothetical protein YQE_02840, partial [Dendrocto... [more]
gi|971511504|dbj|GAQ86712.1|2.720e-727.71hypothetical protein KFL_003060110 [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3431rna3431Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications