EWM27273.1, cds3396 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|585109455|gb|EWM27273.1| (actin related protein [Nannochloropsis gaditana]) HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0 Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query: 1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP
Sbjct: 1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|255541792|ref|XP_002511960.1| (PREDICTED: actin-related protein 4 [Ricinus communis] >gi|223549140|gb|EEF50629.1| protein binding protein, putative [Ricinus communis]) HSP 1 Score: 289.656 bits (740), Expect = 3.911e-90 Identity = 176/462 (38.10%), Postives = 259/462 (56.06%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSS-SKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGEGM-------SASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G I DD+T NPS+ SK NN K ++ + K L G M V +P+ G+V DWD+V+ IW HA + L +D + P+LL E +FN+ + R+ AELMFEK+ PALFLAK++VL+ FA G+ + LVVD G +TTV PV DG++ K + S +GG + L LES G+TI P F + G + + + SY+ ++ + +KE VCR P+ + K S++P YELPDG + G +RF+ DIL NP P + +P E+S ++ G LP+M ++ +C+ + + L SS++LAGG A ++ ERL+ +L + QA RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA V KCP
Sbjct: 3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMELDDTTNNEKNPSADSKNNNGKDSEKGKGKRKLYVGSQAVGFRRDHMEVLSPIKDGVVVDWDIVDNIWDHAFRECLLIDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRPTSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGEFLTDCLLKSLESKGITIKPRYSFRRKENRPGEFQTVDVDFPNTTESYKLYSQRIIASDIKECVCRAPDTAYDEK--AYSNIPMTPYELPDGQTIEIGADRFKIPDILFNP-PLAQTIP---GMENSPEIAPNVRG-----------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYVQRKCP 442
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|18394608|ref|NP_564051.1| (actin-related protein 4 [Arabidopsis thaliana] >gi|75297891|sp|Q84M92.1|ARP4_ARATH RecName: Full=Actin-related protein 4 >gi|21489918|tpg|DAA00027.1| TPA_exp: actin-related protein 4; AtARP4 [Arabidopsis thaliana] >gi|30102728|gb|AAP21282.1| At1g18450 [Arabidopsis thaliana] >gi|110736171|dbj|BAF00057.1| hypothetical protein [Arabidopsis thaliana] >gi|332191594|gb|AEE29715.1| actin-related protein 4 [Arabidopsis thaliana]) HSP 1 Score: 286.574 bits (732), Expect = 7.175e-89 Identity = 167/462 (36.15%), Postives = 254/462 (54.98%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQIQRKEYKF---DLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + DST +N SK + K+ +++ + + M V +P+ G+V DWD+V+ IW+HA K+ L +D + P+LL E NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG + G +RF+ D++ NP + G E K E S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-------------QTIPGME--KYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|1190945537|ref|XP_020866333.1| (actin-related protein 4 [Arabidopsis lyrata subsp. lyrata] >gi|297336118|gb|EFH66535.1| hypothetical protein ARALYDRAFT_472063 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 286.574 bits (732), Expect = 7.253e-89 Identity = 168/462 (36.36%), Postives = 257/462 (55.63%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQI-QRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + DST +N SK + K+ +RK Y + + M V +P+ G+V DWD+V+ IW+HA K+ L +D + P+LL E NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG ++ G +RF+ D++ NP + +P + D + S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGIEAMDVDADSTKTNSNSEDSKTESEKEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEIRAGEFQVEDVDIPNTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQMLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|21427463|gb|AAM53244.1|AF507912_1 (actin-related protein 4 [Arabidopsis thaliana]) HSP 1 Score: 286.189 bits (731), Expect = 1.009e-88 Identity = 167/462 (36.15%), Postives = 254/462 (54.98%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQIQRKEYKF---DLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + DST +N SK + K+ +++ + + M V +P+ G+V DWD+V+ IW+HA K+ L +D + P+LL E NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG + G +RF+ D++ NP + G E K E S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 4 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-------------QTIPGME--KYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 442
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|224118920|ref|XP_002317939.1| (Actin-related family protein [Populus trichocarpa] >gi|222858612|gb|EEE96159.1| Actin-related family protein [Populus trichocarpa]) HSP 1 Score: 286.189 bits (731), Expect = 1.046e-88 Identity = 174/462 (37.66%), Postives = 251/462 (54.33%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSSSKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLG------QPPVAGTGE----GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G I DD T+ N + +NN K ++ + K L G M V +P G+V DWD+V+ IW HA + L +D + P+LL E + N+ + R+ AELMFEK+ +PALFLAK++VL+ FA G+ + LVVD G +TT+ PV DG++ K + S +GG ++ L LES GV I P QP V T + + SYR ++ + +KE VCR P+ TP D S++P YELPDG + G +RF+ DIL NP + E + V G LP+M ++ +C+ + + L SS++LAGG A ++ ERL+ +L + QA RVKVL +G ER+ W+GGSI+ SLG+F +MW SKAEY E GA V KCP
Sbjct: 3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMDVDDMTSNEKNAAVDSKNNVKDSEKGKGKRKLFVGSQALGFRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYTTPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVIQKAVAFSPIGGELLTDCLMKSLESKGVMIKPRYSFKRKEIQPGVFQTVDLDFTNTTDSYRLYSQRVIASDIKECVCRAPD---TPYDESSYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLVQTIPGMDNFVEIAPSVRG---------------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGASYVQRKCP 441
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|21593375|gb|AAM65324.1| (unknown [Arabidopsis thaliana] >gi|1032302030|gb|OAP16355.1| ATARP4 [Arabidopsis thaliana]) HSP 1 Score: 285.419 bits (729), Expect = 1.591e-88 Identity = 168/462 (36.36%), Postives = 256/462 (55.41%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQI-QRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + DST +N SK + K+ +RK Y + + M V +P+ G+V DWD+V+ IW+HA K+ L +D + P+LL E NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG + G +RF+ D++ NP + +P + D + S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|743940016|ref|XP_011014466.1| (PREDICTED: actin-related protein 4-like [Populus euphratica]) HSP 1 Score: 285.034 bits (728), Expect = 2.638e-88 Identity = 172/462 (37.23%), Postives = 251/462 (54.33%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSSSKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLG------QPPVAGTGE----GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G I DD T+ N + +NN K ++ + K L G M V + G+V DWD+V+ IW HA + L +D + P+LL E + N+ + R+ AELMFEK+ +PALFLAK++VL+ FA G+ + LVVD G +TT+ PV DG++ K + S +GG ++ L LES GV I P QP V T + + SYR ++ + +KE VCR P+ TP D S++P YELPDG + G +RF+ DIL NP ++ E + V G LP+M ++ +C+ + + L SS++LAGG A ++ ERL+ +L + QA RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA V KCP
Sbjct: 3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMDVDDMTSNEKNAAVDSKNNVKDSEKGKGKRKLFVGSQALGFRRDHMEVLSSFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYNTPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVIQKAVAFSPIGGELLTDCLMKSLESKGVMIKPRYSFKRKEIQPGVFQTVDLDFTNTTESYRLYSQRVIASDIKECVCRAPD---TPYDESSYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLVQTILGMDNFVEIAPSVRG---------------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYVQRKCP 441
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|727607826|ref|XP_010477023.1| (PREDICTED: actin-related protein 4 [Camelina sativa]) HSP 1 Score: 284.648 bits (727), Expect = 3.187e-88 Identity = 164/460 (35.65%), Postives = 257/460 (55.87%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFI------PPDDSTTRATNPSSSKQNNSKQIQRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + D +T+A + S ++ ++ +RK Y L + M V +P+ G+V DWD+V+ IW+HA ++ L +D + P+LL E N+ + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG + G +RF+ D++ NP + +P + D + S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVEGVEAMDMDVDSTKANSEDSKTESEKEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMIDPKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 439
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|727434013|ref|XP_010498232.1| (PREDICTED: actin-related protein 4-like [Camelina sativa]) HSP 1 Score: 284.648 bits (727), Expect = 3.187e-88 Identity = 164/460 (35.65%), Postives = 256/460 (55.65%), Query Frame = 0
Query: 6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP------PDDSTTRATNPSSSKQNNSKQIQRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
GG E++A+V ++G + + G+AGED P++ FPS G + D +T+A + S ++ ++ +RK Y L + M V +P+ G+V DWD+V+ IW+HA ++ L +D + P+LL E N+ + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G +TT+ PV DG++ K ++ S LGG + L LES G+ I P F + AG + SY+ F +V +K+S+CR+P+ TP D K S++P +YELPDG + G +RF+ D++ NP + +P + D + S LP M ++ +C+ + + L SS++LAGG + ++ ERL+ +L S RVKVL +G ER+ W+GGSI+ SLG+F +MW SK+EY E GA + KCP
Sbjct: 3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDMDVDSTKANSEDSKTESEKEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMIDPKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPDTKESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 439 The following BLAST results are available for this feature:
BLAST of EWM27273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|