EWM27273.1, cds3396 (CDS) Nannochloropsis gaditana

Overview
NameEWM27273.1
Unique Namecds3396
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:335048..335063 -
Alignment locationCM002461.1:333645..334966 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27273.1
Productactin related protein
Orig transcript idgnl|cribi|Naga_100080g24.2837.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:335048..335063 -
CM002461.1supercontigCM002461.1:333645..334966 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0035267NuA4 histone acetyltransferase complex
GO:0031011Ino80 complex
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0007275multicellular organism development
GO:0006338chromatin remodeling
GO:0006281DNA repair
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR027667Arp4
IPR004000Actin
Homology
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|585109455|gb|EWM27273.1| (actin related protein [Nannochloropsis gaditana])

HSP 1 Score: 919.842 bits (2376), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP
Sbjct:    1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGTGEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|255541792|ref|XP_002511960.1| (PREDICTED: actin-related protein 4 [Ricinus communis] >gi|223549140|gb|EEF50629.1| protein binding protein, putative [Ricinus communis])

HSP 1 Score: 289.656 bits (740), Expect = 3.911e-90
Identity = 176/462 (38.10%), Postives = 259/462 (56.06%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSS-SKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGEGM-------SASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G I     DD+T    NPS+ SK NN K  ++ + K  L       G     M V +P+  G+V DWD+V+ IW HA +  L +D  + P+LL E +FN+ + R+  AELMFEK+  PALFLAK++VL+ FA G+ + LVVD G  +TTV PV DG++  K +  S +GG  +   L   LES G+TI P   F  +    G  + +       + SY+ ++   +   +KE VCR P+ +   K    S++P   YELPDG  +  G +RF+  DIL NP P  + +P     E+S ++     G           LP+M   ++ +C+ + +  L SS++LAGG A ++   ERL+ +L   +    QA   RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  V  KCP
Sbjct:    3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMELDDTTNNEKNPSADSKNNNGKDSEKGKGKRKLYVGSQAVGFRRDHMEVLSPIKDGVVVDWDIVDNIWDHAFRECLLIDPKEHPMLLAEPSFNSQQQRERTAELMFEKYNVPALFLAKNAVLTSFASGRPTSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGEFLTDCLLKSLESKGITIKPRYSFRRKENRPGEFQTVDVDFPNTTESYKLYSQRIIASDIKECVCRAPDTAYDEK--AYSNIPMTPYELPDGQTIEIGADRFKIPDILFNP-PLAQTIP---GMENSPEIAPNVRG-----------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYVQRKCP 442          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|18394608|ref|NP_564051.1| (actin-related protein 4 [Arabidopsis thaliana] >gi|75297891|sp|Q84M92.1|ARP4_ARATH RecName: Full=Actin-related protein 4 >gi|21489918|tpg|DAA00027.1| TPA_exp: actin-related protein 4; AtARP4 [Arabidopsis thaliana] >gi|30102728|gb|AAP21282.1| At1g18450 [Arabidopsis thaliana] >gi|110736171|dbj|BAF00057.1| hypothetical protein [Arabidopsis thaliana] >gi|332191594|gb|AEE29715.1| actin-related protein 4 [Arabidopsis thaliana])

HSP 1 Score: 286.574 bits (732), Expect = 7.175e-89
Identity = 167/462 (36.15%), Postives = 254/462 (54.98%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQIQRKEYKF---DLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +          DST   +N   SK  + K+  +++       + +    M V +P+  G+V DWD+V+ IW+HA K+ L +D  + P+LL E   NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +         + SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG  +  G +RF+  D++ NP                  + G E  K  E   S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-------------QTIPGME--KYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|1190945537|ref|XP_020866333.1| (actin-related protein 4 [Arabidopsis lyrata subsp. lyrata] >gi|297336118|gb|EFH66535.1| hypothetical protein ARALYDRAFT_472063 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 286.574 bits (732), Expect = 7.253e-89
Identity = 168/462 (36.36%), Postives = 257/462 (55.63%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQI-QRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +          DST   +N   SK  + K+  +RK Y     + +    M V +P+  G+V DWD+V+ IW+HA K+ L +D  + P+LL E   NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +         + SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG ++  G +RF+  D++ NP    + +P   +  D +               S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGIEAMDVDADSTKTNSNSEDSKTESEKEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEIRAGEFQVEDVDIPNTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQMLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|21427463|gb|AAM53244.1|AF507912_1 (actin-related protein 4 [Arabidopsis thaliana])

HSP 1 Score: 286.189 bits (731), Expect = 1.009e-88
Identity = 167/462 (36.15%), Postives = 254/462 (54.98%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQIQRKEYKF---DLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +          DST   +N   SK  + K+  +++       + +    M V +P+  G+V DWD+V+ IW+HA K+ L +D  + P+LL E   NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +         + SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG  +  G +RF+  D++ NP                  + G E  K  E   S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    4 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-------------QTIPGME--KYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 442          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|224118920|ref|XP_002317939.1| (Actin-related family protein [Populus trichocarpa] >gi|222858612|gb|EEE96159.1| Actin-related family protein [Populus trichocarpa])

HSP 1 Score: 286.189 bits (731), Expect = 1.046e-88
Identity = 174/462 (37.66%), Postives = 251/462 (54.33%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSSSKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLG------QPPVAGTGE----GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G I     DD T+   N +   +NN K  ++ + K  L       G     M V +P   G+V DWD+V+ IW HA +  L +D  + P+LL E + N+ + R+  AELMFEK+ +PALFLAK++VL+ FA G+ + LVVD G  +TT+ PV DG++  K +  S +GG ++   L   LES GV I P         QP V  T +      + SYR ++   +   +KE VCR P+   TP D    S++P   YELPDG  +  G +RF+  DIL NP     +       E +  V G               LP+M   ++ +C+ + +  L SS++LAGG A ++   ERL+ +L   +    QA   RVKVL +G   ER+   W+GGSI+ SLG+F +MW SKAEY E GA  V  KCP
Sbjct:    3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMDVDDMTSNEKNAAVDSKNNVKDSEKGKGKRKLFVGSQALGFRRDHMEVLSPFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYTTPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVIQKAVAFSPIGGELLTDCLMKSLESKGVMIKPRYSFKRKEIQPGVFQTVDLDFTNTTDSYRLYSQRVIASDIKECVCRAPD---TPYDESSYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLVQTIPGMDNFVEIAPSVRG---------------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGASYVQRKCP 441          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|21593375|gb|AAM65324.1| (unknown [Arabidopsis thaliana] >gi|1032302030|gb|OAP16355.1| ATARP4 [Arabidopsis thaliana])

HSP 1 Score: 285.419 bits (729), Expect = 1.591e-88
Identity = 168/462 (36.36%), Postives = 256/462 (55.41%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP-------PDDSTTRATNPSSSKQNNSKQI-QRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +          DST   +N   SK  + K+  +RK Y     + +    M V +P+  G+V DWD+V+ IW+HA K+ L +D  + P+LL E   NT + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +         + SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG  +  G +RF+  D++ NP    + +P   +  D +               S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|743940016|ref|XP_011014466.1| (PREDICTED: actin-related protein 4-like [Populus euphratica])

HSP 1 Score: 285.034 bits (728), Expect = 2.638e-88
Identity = 172/462 (37.23%), Postives = 251/462 (54.33%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPP---DDSTTRATNPSSSKQNNSKQIQRKEYKFDL-------GHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLG------QPPVAGTGE----GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G I     DD T+   N +   +NN K  ++ + K  L       G     M V +    G+V DWD+V+ IW HA +  L +D  + P+LL E + N+ + R+  AELMFEK+ +PALFLAK++VL+ FA G+ + LVVD G  +TT+ PV DG++  K +  S +GG ++   L   LES GV I P         QP V  T +      + SYR ++   +   +KE VCR P+   TP D    S++P   YELPDG  +  G +RF+  DIL NP     ++      E +  V G               LP+M   ++ +C+ + +  L SS++LAGG A ++   ERL+ +L   +    QA   RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  V  KCP
Sbjct:    3 GGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMDVDDMTSNEKNAAVDSKNNVKDSEKGKGKRKLFVGSQALGFRRDHMEVLSSFKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYNTPALFLAKNAVLTSFASGRATSLVVDSGGGSTTIAPVHDGYVIQKAVAFSPIGGELLTDCLMKSLESKGVMIKPRYSFKRKEIQPGVFQTVDLDFTNTTESYRLYSQRVIASDIKECVCRAPD---TPYDESSYSNIPMTPYELPDGQTIEIGADRFKIPDILFNPSLVQTILGMDNFVEIAPSVRG---------------LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDL---LEESPQAA--RVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYVQRKCP 441          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|727607826|ref|XP_010477023.1| (PREDICTED: actin-related protein 4 [Camelina sativa])

HSP 1 Score: 284.648 bits (727), Expect = 3.187e-88
Identity = 164/460 (35.65%), Postives = 257/460 (55.87%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFI------PPDDSTTRATNPSSSKQNNSKQIQRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +        D  +T+A +  S  ++  ++ +RK Y     L +    M V +P+  G+V DWD+V+ IW+HA ++ L +D  + P+LL E   N+ + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +         + SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG  +  G +RF+  D++ NP    + +P   +  D +               S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVEGVEAMDMDVDSTKANSEDSKTESEKEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMIDPKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 439          
BLAST of EWM27273.1 vs. NCBI_GenBank
Match: gi|727434013|ref|XP_010498232.1| (PREDICTED: actin-related protein 4-like [Camelina sativa])

HSP 1 Score: 284.648 bits (727), Expect = 3.187e-88
Identity = 164/460 (35.65%), Postives = 256/460 (55.65%), Query Frame = 0
Query:    6 GGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIP------PDDSTTRATNPSSSKQNNSKQIQRKEY--KFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDP---FLGQPPVAGTGE-------GMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKD-SSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAG-PQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
            GG E++A+V ++G +  + G+AGED P++ FPS  G +        D  +T+A +  S  ++  ++ +RK Y     L +    M V +P+  G+V DWD+V+ IW+HA ++ L +D  + P+LL E   N+ + R++ AELMFEK++ PALF+AK+ VL+ FA G+ + LVVD G  +TT+ PV DG++  K ++ S LGG  +   L   LES G+ I P   F  +   AG  +           SY+ F    +V  +K+S+CR+P+   TP D K  S++P  +YELPDG  +  G +RF+  D++ NP    + +P   +  D +               S   LP M   ++ +C+ + +  L SS++LAGG + ++   ERL+ +L           S RVKVL +G   ER+   W+GGSI+ SLG+F +MW SK+EY E GA  +  KCP
Sbjct:    3 GGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDMDVDSTKANSEDSKTESEKEKGKRKLYVGSQALSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFRSCLMIDPKEHPMLLAEPPLNSQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIKPRYSFKRKEIRAGEFQVEDVDIPDTKESYKLFCQRMIVGDIKDSICRVPD---TPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIV-QTIPGMEKYADMIP--------------SVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLVEE-----SPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 439          
The following BLAST results are available for this feature:
BLAST of EWM27273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109455|gb|EWM27273.1|0.000e+0100.00actin related protein [Nannochloropsis gaditana][more]
gi|255541792|ref|XP_002511960.1|3.911e-9038.10PREDICTED: actin-related protein 4 [Ricinus commun... [more]
gi|18394608|ref|NP_564051.1|7.175e-8936.15actin-related protein 4 [Arabidopsis thaliana] >gi... [more]
gi|1190945537|ref|XP_020866333.1|7.253e-8936.36actin-related protein 4 [Arabidopsis lyrata subsp.... [more]
gi|21427463|gb|AAM53244.1|AF507912_11.009e-8836.15actin-related protein 4 [Arabidopsis thaliana][more]
gi|224118920|ref|XP_002317939.1|1.046e-8837.66Actin-related family protein [Populus trichocarpa]... [more]
gi|21593375|gb|AAM65324.1|1.591e-8836.36unknown [Arabidopsis thaliana] >gi|1032302030|gb|O... [more]
gi|743940016|ref|XP_011014466.1|2.638e-8837.23PREDICTED: actin-related protein 4-like [Populus e... [more]
gi|727607826|ref|XP_010477023.1|3.187e-8835.65PREDICTED: actin-related protein 4 [Camelina sativ... [more]
gi|727434013|ref|XP_010498232.1|3.187e-8835.65PREDICTED: actin-related protein 4-like [Camelina ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3405rna3405Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications