EWM27301.1, cds3373 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|585109486|gb|EWM27301.1| (ATPase, F0 complex, subunit D, mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 377.096 bits (967), Expect = 2.733e-132 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK 188
MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK
Sbjct: 1 MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK 188
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|156365801|ref|XP_001626831.1| (predicted protein [Nematostella vectensis] >gi|156213722|gb|EDO34731.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 59.6918 bits (143), Expect = 5.380e-8 Identity = 40/159 (25.16%), Postives = 78/159 (49.06%), Query Frame = 0
Query: 31 LSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGI------DWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQW 183
+ +W + +V A E +AD ++ +D ++ ++ + IDWA Y+ NI PG V+ ++ YE I D + E+E+A +E + L+ + I+E QA+M ++++ +D V + E +P +K++ +EI+ H W
Sbjct: 10 VPDWVKIASRVPA--EGRADMARFRSIYDNLKSGLDSVPAKAETIDWAFYQKNISKPGMVESFRKAYEAITVPYPKDTQTAKIDVVEKEMA----------QECEKLMRESRMRIKEYQAEMEKIKSQKSFEDMTVDEYLEMHPELKKQADEEIKKHIW 156
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|397572685|gb|EJK48367.1| (hypothetical protein THAOC_32842 [Thalassiosira oceanica]) HSP 1 Score: 58.5362 bits (140), Expect = 1.457e-7 Identity = 50/164 (30.49%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 25 SVTRRALSNWDALGRKVEADVEAK-ADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDV 187
S R A +W + K + ++ A A F A Q D + + +S +PID+A K +I VD L++ + + SE+ D A K L+E+ KA +++IE+T+ ++ T RT ++ D+ E P I +EV EIEN +WFKD
Sbjct: 10 SARRMASVDWSSPVFKGDPELSAMVAGFRAWTAQADTMA---DKYSAAPSPIDFATAKKSIRDKALVDGLEQFAKSFTPPAETYEWSED----DKASKLQLIEDAKAGEDFTKEMIEDTEKEIAFMRTHRTTREVSTSDMKEIYPDIAEEVETEIENREWFKDT 166
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|223998666|ref|XP_002289006.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976114|gb|EED94442.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 59.6918 bits (143), Expect = 2.928e-7 Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 0
Query: 49 ADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDV 187
A F A Q D + + F + PID+A K ++ V+ L++ Y L + S++ D A K+ L+E+ KA +A +++IE+TQ ++ +T +D D+ E P I +EV EIEN +WFKD
Sbjct: 70 AGFRAWTAQADTMAEKF---AAPPTPIDFASAKKSVRDVALVEGLEKMYNSSSPPALTYEWSKD----DQAKKSQLIEDAKAGLAFTQEMIEDTQEEIVYLRLNKTTRDMSTSDMKEIYPDIAEEVEKEIENREWFKDT 201 The following BLAST results are available for this feature:
BLAST of EWM27301.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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