EWM27301.1, cds3373 (CDS) Nannochloropsis gaditana

Overview
NameEWM27301.1
Unique Namecds3373
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:269475..269575 +
Alignment locationCM002461.1:269858..269969 +
Alignment locationCM002461.1:270293..270451 +
Alignment locationCM002461.1:270688..270834 +
Alignment locationCM002461.1:271048..271095 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27301.1
ProductATPase, F0 complex, subunit D, mitochondrial
Orig transcript idgnl|cribi|Naga_100824g2.7362.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:269475..269575 +
CM002461.1supercontigCM002461.1:269858..269969 +
CM002461.1supercontigCM002461.1:270293..270451 +
CM002461.1supercontigCM002461.1:270688..270834 +
CM002461.1supercontigCM002461.1:271048..271095 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015078proton transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Vocabulary: INTERPRO
TermDefinition
IPR008689ATPase_F0-cplx_dsu_mt
Homology
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|585109486|gb|EWM27301.1| (ATPase, F0 complex, subunit D, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 377.096 bits (967), Expect = 2.733e-132
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK 188
            MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK
Sbjct:    1 MASTVRGIVSRQQALWMRTAAAPVSVTRRALSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK 188          
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|156365801|ref|XP_001626831.1| (predicted protein [Nematostella vectensis] >gi|156213722|gb|EDO34731.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 59.6918 bits (143), Expect = 5.380e-8
Identity = 40/159 (25.16%), Postives = 78/159 (49.06%), Query Frame = 0
Query:   31 LSNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGI------DWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQW 183
            + +W  +  +V A  E +AD    ++ +D ++   ++   +   IDWA Y+ NI  PG V+  ++ YE I      D       + E+E+A          +E + L+  +   I+E QA+M    ++++ +D  V +  E +P +K++  +EI+ H W
Sbjct:   10 VPDWVKIASRVPA--EGRADMARFRSIYDNLKSGLDSVPAKAETIDWAFYQKNISKPGMVESFRKAYEAITVPYPKDTQTAKIDVVEKEMA----------QECEKLMRESRMRIKEYQAEMEKIKSQKSFEDMTVDEYLEMHPELKKQADEEIKKHIW 156          
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|397572685|gb|EJK48367.1| (hypothetical protein THAOC_32842 [Thalassiosira oceanica])

HSP 1 Score: 58.5362 bits (140), Expect = 1.457e-7
Identity = 50/164 (30.49%), Postives = 80/164 (48.78%), Query Frame = 0
Query:   25 SVTRRALSNWDALGRKVEADVEAK-ADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDV 187
            S  R A  +W +   K + ++ A  A F A   Q D +    + +S   +PID+A  K +I     VD L++  +         + SE+    D A K  L+E+ KA     +++IE+T+ ++    T RT ++    D+ E  P I +EV  EIEN +WFKD 
Sbjct:   10 SARRMASVDWSSPVFKGDPELSAMVAGFRAWTAQADTMA---DKYSAAPSPIDFATAKKSIRDKALVDGLEQFAKSFTPPAETYEWSED----DKASKLQLIEDAKAGEDFTKEMIEDTEKEIAFMRTHRTTREVSTSDMKEIYPDIAEEVETEIENREWFKDT 166          
BLAST of EWM27301.1 vs. NCBI_GenBank
Match: gi|223998666|ref|XP_002289006.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976114|gb|EED94442.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 59.6918 bits (143), Expect = 2.928e-7
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 0
Query:   49 ADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDV 187
            A F A   Q D + + F   +    PID+A  K ++     V+ L++ Y       L  + S++    D A K+ L+E+ KA +A  +++IE+TQ ++      +T +D    D+ E  P I +EV  EIEN +WFKD 
Sbjct:   70 AGFRAWTAQADTMAEKF---AAPPTPIDFASAKKSVRDVALVEGLEKMYNSSSPPALTYEWSKD----DQAKKSQLIEDAKAGLAFTQEMIEDTQEEIVYLRLNKTTRDMSTSDMKEIYPDIAEEVEKEIENREWFKDT 201          
The following BLAST results are available for this feature:
BLAST of EWM27301.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109486|gb|EWM27301.1|2.733e-132100.00ATPase, F0 complex, subunit D, mitochondrial [Nann... [more]
gi|156365801|ref|XP_001626831.1|5.380e-825.16predicted protein [Nematostella vectensis] >gi|156... [more]
gi|397572685|gb|EJK48367.1|1.457e-730.49hypothetical protein THAOC_32842 [Thalassiosira oc... [more]
gi|223998666|ref|XP_002289006.1|2.928e-731.65predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3382rna3382Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications