EWM27307.1, cds3366 (CDS) Nannochloropsis gaditana

Overview
NameEWM27307.1
Unique Namecds3366
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:255897..255979 -
Alignment locationCM002461.1:255665..255756 -
Alignment locationCM002461.1:255336..255444 -
Alignment locationCM002461.1:255020..255125 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27307.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102134g1.5285.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:255897..255979 -
CM002461.1supercontigCM002461.1:255665..255756 -
CM002461.1supercontigCM002461.1:255336..255444 -
CM002461.1supercontigCM002461.1:255020..255125 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|585109500|gb|EWM27307.1| (hypothetical protein Naga_102134g1 [Nannochloropsis gaditana])

HSP 1 Score: 261.151 bits (666), Expect = 2.438e-88
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR
Sbjct:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|299472422|emb|CBN77610.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.997 bits (271), Expect = 4.296e-25
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGK--------IPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            M+LGLL +G  + +L+F + +N  + +SFGD++N  LPHI+ PL  + +S + TP G   P LG +F   E DK R+A +        + +  F T  T SFSFHSM++D   W     P +R +DLH  W  +A+R
Sbjct:  586 MKLGLLTRGLCKLLLSFGQKLNRRLHYSFGDNDNAELPHISFPLLTSVDSLVCTPEGQEVPALGKSF---EEDKDRKASRRRGEEDKALGIGDFQTGCTYSFSFHSMYIDMAQWSTCKIPVMRDIDLHTFWGNAALR 719          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|585113187|gb|EWM30523.1| (protein of unknown function DUF547 [Nannochloropsis gaditana])

HSP 1 Score: 96.6709 bits (239), Expect = 1.051e-20
Identity = 53/127 (41.73%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDD-------NNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVT-SETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDL 119
            M LGL+ K  A  +LAF R +  ++ +SFGD            LPH+T PL    +  ++TPAG  PPPLG  F    ET   RR GK   P F      S SFHSM+LDF  W+LV+    +S+DL
Sbjct:  265 MHLGLVTKTVAGMVLAFARRVLKNLHYSFGDKGGEAVEAEQVELPHLTFPLSRGMDRLVVTPAGQEPPPLGKEFYEPDETRVPRRGGKGKEPEFVLGPIYSMSFHSMYLDFSQWQLVNIAGQKSIDL 391          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|922864432|gb|KOO31692.1| (hypothetical protein Ctob_006924 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 93.2041 bits (230), Expect = 1.672e-19
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGD---DNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETD--------KARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            M+LGLL KG A+ +L+ + A+ P +  SFG+     N   PHI   L  AA+  I+TPAG APPPLG +      D        + R+ G IP   F+   T +FSF++  LD  TW++V  PF  ++DLH  W   A+R
Sbjct:   39 MQLGLLTKGVARGVLSLISAVLP-IHFSFGNPSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRRQLGAIP---FEVGPTYTFSFNTSNLDLPTWKMVGVPFSGTVDLHNFWQDGALR 174          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|551605548|ref|XP_005784166.1| (hypothetical protein EMIHUDRAFT_442069 [Emiliania huxleyi CCMP1516] >gi|485637230|gb|EOD31737.1| hypothetical protein EMIHUDRAFT_442069 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 92.8189 bits (229), Expect = 2.158e-19
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINP-DMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            M+LGL+ +G ++ IL  +   NP  M +SFGD     LPHI +PL+ A +  + +P G APP LG+    SE  ++ R G   L  +D + T SFSF++ ++D   W+L   P +R + L   W+ S +R
Sbjct:  195 MQLGLVTRGLSKLILQLLVKFNPPGMHYSFGDREGRMLPHIVLPLWRAVDRLVASPPGTAPPELGVPLDESEAARSARKGGASLGEWDPSFTYSFSFNTGYIDLPHWKLHRLP-MRDVYLSSFWSDSDLR 323          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|673016644|ref|XP_008862283.1| (hypothetical protein H310_01051 [Aphanomyces invadans] >gi|574481486|gb|ETW08478.1| hypothetical protein H310_01051 [Aphanomyces invadans])

HSP 1 Score: 89.3521 bits (220), Expect = 3.274e-18
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGD--------DNNTTLPHITVPLFHAAESFIITPAGAAPPPLGIN--FVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            M+LG   KG  + +L+ +  +   + +SFG          ++  LPH+  PL  + + FI TPAG  PP LG +    T E    RR+GK P   F+T  T SFSF + +LDF+ W++V+ P +  ++L   W    +R
Sbjct:  186 MKLGFFTKGLCRVLLSVINCLVVGLHNSFGRLYPGDVALQDDEELPHLAFPLHSSVDEFICTPAGEEPPALGSDGFLETREERAKRRSGKYPY-EFNTADTYSFSFFNFYLDFENWKVVNAPGVPDINLSQFWGSMPMR 323          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|698777805|ref|XP_009821946.1| (hypothetical protein H257_00783 [Aphanomyces astaci] >gi|574124071|gb|ETV89546.1| hypothetical protein H257_00783 [Aphanomyces astaci])

HSP 1 Score: 87.0409 bits (214), Expect = 2.210e-17
Identity = 50/141 (35.46%), Postives = 77/141 (54.61%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFG----------DDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGIN-FVTSETDKA-RRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            M+LG  AKG  + +L+ +  +   + +SFG          DD    LPH+  PL  + + FI TPAG  PP LG + F+ +  ++A RR+GK P   F+T  T SFSF + +LDF+ W++V+ P +  + L   W    +R
Sbjct:  187 MKLGFFAKGLCRVLLSVINCLVVGLHNSFGRLYPGDVAAVDDEE--LPHLAFPLHSSVDEFICTPAGEDPPALGADGFMETREERAHRRSGKHPY-EFNTHDTYSFSFFNFYLDFENWKVVNAPGVPDIHLAQFWGNMPLR 324          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|635369224|emb|CCI42573.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 86.6557 bits (213), Expect = 2.610e-17
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFV--TSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            + LG+  K  A  +L  ++ +   + +SFGD  N  LPHI  PLF   + F  TP G   P LG+  +  T +  K R++  +    F    T +F FH+M++D   W+ V+ P I  + L   +  S +R
Sbjct:  256 ISLGIFTKSVALMVLGIIKKLVGKIHYSFGDSKNHELPHIAFPLFQTVDQFTCTPKGQLAPQLGVQVIQETEQAQKHRKSVPVGQETFKVGPTYTFHFHTMYVDLHHWKTVNIPGINDMKLSTFFNSSPLR 386          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|325183690|emb|CCA18149.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 84.7297 bits (208), Expect = 1.370e-16
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPL---PRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAVR 129
            + LG+L K  A  +L  ++ +   + +SFGD  +  LPH+  PL+   + FI TP G   P LG+  +  ET++AR+  K  L     F    T +F FH+M++D   W+ V+ P I  + L   +  S +R
Sbjct:  256 ISLGILTKSVALMVLGIIKKLVGKIHYSFGDSKDQELPHVAFPLYQTVDQFICTPEGQVAPQLGVEDI-QETEQARKLRKSVLVGQEAFQVGPTYTFHFHTMYVDLLHWKTVNIPGINDMKLSTFFDSSPLR 386          
BLAST of EWM27307.1 vs. NCBI_GenBank
Match: gi|1210527119|dbj|GAX14092.1| (hypothetical protein FisN_8Hh072 [Fistulifera solaris])

HSP 1 Score: 83.9593 bits (206), Expect = 2.421e-16
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 0
Query:    1 MELGLLAKGFAQTILAFVRAINPDMKHSFGDDNNTTLPHITVPLFHAAESFIITPAGAAPPPLGINFVTSETDKARRAGKIPLPRFDTTSTISFSFHSMFLDFQTWRLVSFPFIRSLDLHLMWARSAV 128
            M LGL+ +G A+ +L  V+  + ++ +SFG D++  + HI +P F A E +I+TP    PP LG  +  +      R        ++TT T S  F SM++D   W+LV  P    + L   W  S V
Sbjct:  240 MRLGLVTQGVARLLLKLVQRFHSNVHYSFGTDDDEEMAHIVIPAFTAMEKWIVTPPSQTPPRLGDMWEETPESMQFRKETQSTGSWNTTDTYSMEFFSMYIDLAQWKLVQLPVSGDVALQTFWGDSPV 367          
The following BLAST results are available for this feature:
BLAST of EWM27307.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109500|gb|EWM27307.1|2.438e-88100.00hypothetical protein Naga_102134g1 [Nannochloropsi... [more]
gi|299472422|emb|CBN77610.1|4.296e-2538.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|585113187|gb|EWM30523.1|1.051e-2041.73protein of unknown function DUF547 [Nannochloropsi... [more]
gi|922864432|gb|KOO31692.1|1.672e-1939.29hypothetical protein Ctob_006924 [Chrysochromulina... [more]
gi|551605548|ref|XP_005784166.1|2.158e-1936.92hypothetical protein EMIHUDRAFT_442069 [Emiliania ... [more]
gi|673016644|ref|XP_008862283.1|3.274e-1833.81hypothetical protein H310_01051 [Aphanomyces invad... [more]
gi|698777805|ref|XP_009821946.1|2.210e-1735.46hypothetical protein H257_00783 [Aphanomyces astac... [more]
gi|635369224|emb|CCI42573.1|2.610e-1731.30unnamed protein product [Albugo candida][more]
gi|325183690|emb|CCA18149.1|1.370e-1632.58conserved hypothetical protein [Albugo laibachii N... [more]
gi|1210527119|dbj|GAX14092.1|2.421e-1632.81hypothetical protein FisN_8Hh072 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3375rna3375Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications