EWM27327.1, cds3349 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|585109527|gb|EWM27327.1| (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana]) HSP 1 Score: 436.417 bits (1121), Expect = 7.032e-155 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query: 1 MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR 215
MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR
Sbjct: 1 MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR 215
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|873233838|emb|CEM02534.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 63.1586 bits (152), Expect = 5.576e-9 Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 0
Query: 35 PHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHW 149
PHP P SSLR+S V P +P + ++ +P +ET +++ ++LILYND VN+R HVARTL V + +A++ MM AH GSA W
Sbjct: 47 PHPFIYRPTHSSLRMS--------------VAAPPRPAIEKSPEVITAPSEPARDETPKKAD---KYKLILYNDPVNTREHVARTLCKVVGFDNKQAFDCMMKAHTTGSALVGIW 144
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|224001838|ref|XP_002290591.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974013|gb|EED92343.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 60.077 bits (144), Expect = 5.079e-8 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0
Query: 90 ETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSA--GRRHWLRRHESRLARMK 161
+ +++S D GW + LYND +N R VAR L +C L D AY VMM AH+QG + G+ H R + L +MK
Sbjct: 62 DADSKSAKDPGWLVRLYNDPMNKREFVARCLMEICGLDDGAAYTVMMHAHQQGLSVIGKYH---REVAELYKMK 132
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|219113493|ref|XP_002186330.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583180|gb|ACI65800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 59.3066 bits (142), Expect = 1.102e-7 Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 0
Query: 16 FLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVAS--SPASPTFSTVVEPAKPKV-APGTDLGPSPVILVVEETEARSELD-GGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWL 150
L+ LAL+ S+ AF P RP + S S VA+ SPA+ +E KV AP P+ V E + R + WE+ +YND +N+R HVAR+L V +++ AY+ MM AH+ G A W+
Sbjct: 7 LLVVLALLGSSVTAFFAPS----RPKASFGSSVSRSTVAARMSPAT------IERESVKVGAPAVLDRPAEKTRVDEPVKERKGMGHEAWEVRIYNDGLNTREHVARSLVQVTGMSEMEAYQTMMQAHQNGIAVVGRWV 135 The following BLAST results are available for this feature:
BLAST of EWM27327.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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