EWM27327.1, cds3349 (CDS) Nannochloropsis gaditana

Overview
NameEWM27327.1
Unique Namecds3349
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:211254..211677 -
Alignment locationCM002461.1:210712..210935 -

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Properties
Property NameValue
Protein idEWM27327.1
Productatp-dependent clp protease adaptor protein
Orig transcript idgnl|cribi|Naga_100192g8.10355.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:211254..211677 -
CM002461.1supercontigCM002461.1:210712..210935 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Homology
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|585109527|gb|EWM27327.1| (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana])

HSP 1 Score: 436.417 bits (1121), Expect = 7.032e-155
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR 215
            MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR
Sbjct:    1 MHYPHVHQRRPLLSPFLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWLRRHESRLARMKRRAIEAACFQWESCTLEWLLRIGMEGDCRVNEERKALVERTSGAKRDSARRTLR 215          
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|873233838|emb|CEM02534.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 63.1586 bits (152), Expect = 5.576e-9
Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 0
Query:   35 PHPLRPAPAMSSLRLSSAVASSPASPTFSTVVEPAKPKVAPGTDLGPSPVILVVEETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHW 149
            PHP    P  SSLR+S              V  P +P +    ++  +P     +ET  +++    ++LILYND VN+R HVARTL  V    + +A++ MM AH  GSA    W
Sbjct:   47 PHPFIYRPTHSSLRMS--------------VAAPPRPAIEKSPEVITAPSEPARDETPKKAD---KYKLILYNDPVNTREHVARTLCKVVGFDNKQAFDCMMKAHTTGSALVGIW 144          
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|224001838|ref|XP_002290591.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974013|gb|EED92343.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 60.077 bits (144), Expect = 5.079e-8
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0
Query:   90 ETEARSELDGGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSA--GRRHWLRRHESRLARMK 161
            + +++S  D GW + LYND +N R  VAR L  +C L D  AY VMM AH+QG +  G+ H   R  + L +MK
Sbjct:   62 DADSKSAKDPGWLVRLYNDPMNKREFVARCLMEICGLDDGAAYTVMMHAHQQGLSVIGKYH---REVAELYKMK 132          
BLAST of EWM27327.1 vs. NCBI_GenBank
Match: gi|219113493|ref|XP_002186330.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583180|gb|ACI65800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 59.3066 bits (142), Expect = 1.102e-7
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 0
Query:   16 FLLGLALILPSLQAFLFPPPHPLRPAPAMSSLRLSSAVAS--SPASPTFSTVVEPAKPKV-APGTDLGPSPVILVVEETEARSELD-GGWELILYNDEVNSRHHVARTLTSVCQLTDDRAYEVMMTAHRQGSAGRRHWL 150
             L+ LAL+  S+ AF  P     RP  +  S    S VA+  SPA+      +E    KV AP     P+    V E  + R  +    WE+ +YND +N+R HVAR+L  V  +++  AY+ MM AH+ G A    W+
Sbjct:    7 LLVVLALLGSSVTAFFAPS----RPKASFGSSVSRSTVAARMSPAT------IERESVKVGAPAVLDRPAEKTRVDEPVKERKGMGHEAWEVRIYNDGLNTREHVARSLVQVTGMSEMEAYQTMMQAHQNGIAVVGRWV 135          
The following BLAST results are available for this feature:
BLAST of EWM27327.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109527|gb|EWM27327.1|7.032e-155100.00atp-dependent clp protease adaptor protein [Nannoc... [more]
gi|873233838|emb|CEM02534.1|5.576e-934.78unnamed protein product [Vitrella brassicaformis C... [more]
gi|224001838|ref|XP_002290591.1|5.079e-843.24predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219113493|ref|XP_002186330.1|1.102e-734.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3358rna3358Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications