EWM27323.1, cds3346 (CDS) Nannochloropsis gaditana

Overview
NameEWM27323.1
Unique Namecds3346
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:199850..201511 +

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Properties
Property NameValue
Protein idEWM27323.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100192g11.10351.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:199850..201511 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27323.1 vs. NCBI_GenBank
Match: gi|585109523|gb|EWM27323.1| (hypothetical protein Naga_100192g11 [Nannochloropsis gaditana])

HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0
Query:    1 MYGPVPAPSHAEQSRSEDSNKVMKFKRQQALTPTPQSPFTDFRHRGNEEEEEEEEEIVTFRIDGQHVPASNTTSTPGENELHKLKDADDISRAETYQRVPLTCTQAPAQSSVPIPTTDAVAFGGHPSYSCAKKPQEKAMHNMEAVMEATAAKSVGETNPLGPASLPSGPCAPFDGSDMKDHDGLSLPKETAGIDKDVKEDQEMDELNGRLSEGLSLKYDFGGEHCPKYSQREVDLLVGKRVEEAKTALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAEVSQYKGEMRRAQEEAGEALRQKDDAVAKARDLEAEAAALRVTAGRMEEEKERQARSAEEKMRKLRTALEKMEDEKSIAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTLFPKAMEHASMCEELLVMVESLNQKLESQEGK 553
            MYGPVPAPSHAEQSRSEDSNKVMKFKRQQALTPTPQSPFTDFRHRGNEEEEEEEEEIVTFRIDGQHVPASNTTSTPGENELHKLKDADDISRAETYQRVPLTCTQAPAQSSVPIPTTDAVAFGGHPSYSCAKKPQEKAMHNMEAVMEATAAKSVGETNPLGPASLPSGPCAPFDGSDMKDHDGLSLPKETAGIDKDVKEDQEMDELNGRLSEGLSLKYDFGGEHCPKYSQREVDLLVGKRVEEAKTALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAEVSQYKGEMRRAQEEAGEALRQKDDAVAKARDLEAEAAALRVTAGRMEEEKERQARSAEEKMRKLRTALEKMEDEKSIAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTLFPKAMEHASMCEELLVMVESLNQKLESQEGK
Sbjct:    1 MYGPVPAPSHAEQSRSEDSNKVMKFKRQQALTPTPQSPFTDFRHRGNEEEEEEEEEIVTFRIDGQHVPASNTTSTPGENELHKLKDADDISRAETYQRVPLTCTQAPAQSSVPIPTTDAVAFGGHPSYSCAKKPQEKAMHNMEAVMEATAAKSVGETNPLGPASLPSGPCAPFDGSDMKDHDGLSLPKETAGIDKDVKEDQEMDELNGRLSEGLSLKYDFGGEHCPKYSQREVDLLVGKRVEEAKTALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAEVSQYKGEMRRAQEEAGEALRQKDDAVAKARDLEAEAAALRVTAGRMEEEKERQARSAEEKMRKLRTALEKMEDEKSIAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTLFPKAMEHASMCEELLVMVESLNQKLESQEGK 553          
BLAST of EWM27323.1 vs. NCBI_GenBank
Match: gi|553188544|ref|XP_005854816.1| (hypothetical protein NGA_2042120, partial [Nannochloropsis gaditana CCMP526] >gi|553190887|ref|XP_005855285.1| hypothetical protein NGA_2042110, partial [Nannochloropsis gaditana CCMP526] >gi|422293776|gb|EKU21076.1| hypothetical protein NGA_2042110, partial [Nannochloropsis gaditana CCMP526] >gi|422294244|gb|EKU21544.1| hypothetical protein NGA_2042120, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 322.398 bits (825), Expect = 1.979e-105
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:  246 TALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAE 409
            TALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAE
Sbjct:    1 TALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAE 164          
BLAST of EWM27323.1 vs. NCBI_GenBank
Match: gi|298708937|emb|CBJ30891.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.3142 bits (155), Expect = 4.195e-7
Identity = 90/331 (27.19%), Postives = 150/331 (45.32%), Query Frame = 0
Query:  214 LSLKYDFGGE-HCPKYSQREVDLLVGKRVEEAKTAL---VAAQAMAHTEEMASWEAKLKKAEEDGQRWKA---QCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAE-----------KLE-AEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAE---VSQYKGEMRRAQEEAGEALRQKDDAVAKARDLEAEAAALRVTAGRMEEEKERQARSAEEKMRKLRTALEKMEDEKSIAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTL 522
            L +   +G E H  K+SQ EVD  + +R+ E ++A    V+     H  ++ +   KL+++  DG R K        LE ++ A L    G  AA  K +   ++ KE  L AVTAQL  ++  +A    E    +Q++ E    E R  R +AE           KLE +E+ +R   ++ MK+ +   AQ+QFA A +    L + LE  EA+   + +   E     E AG+   +    V   ++ + EAAA   +A R E   +++A +           +E M  E+  A   R+ + ++L+R A+   + K    + E K   L
Sbjct:  680 LGMAEAYGHEDHRAKFSQAEVDAKIKERLAEEQSAFEKTVSGLKSTHEADLQAAADKLQQSSSDGNRAKIAARDAEALEREI-AMLSERYGEAAAEAKHSGKILLEKEALLDAVTAQLMGLKSDLATTRAEHAAEKQRMTETADSE-RRARSLAESRLQQLEVAYNKLEDSEREKRAAGILKMKNDMKALAQQQFAGANKQHAALRARLERSEAQTRLLEEAAKEFNAKLETAGQKSTELSGQVEALQNEKVEAAA---SASRREHVLQQEATALRNDAESRLDEMEAMARERDAANSGRDVSQDALARMAIRNTQLKESVADLEGKVKEL 1005          
The following BLAST results are available for this feature:
BLAST of EWM27323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109523|gb|EWM27323.1|0.000e+0100.00hypothetical protein Naga_100192g11 [Nannochlorops... [more]
gi|553188544|ref|XP_005854816.1|1.979e-105100.00hypothetical protein NGA_2042120, partial [Nannoch... [more]
gi|298708937|emb|CBJ30891.1|4.195e-727.19expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3355rna3355Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications