EWM27331.1, cds3343 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|585109532|gb|EWM27331.1| (ataxin 10 [Nannochloropsis gaditana]) HSP 1 Score: 1217.99 bits (3150), Expect = 0.000e+0 Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0
Query: 1 MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP 596
MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP
Sbjct: 1 MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP 596
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|459178395|ref|XP_002122907.2| (PREDICTED: ataxin-10-like isoform X1 [Ciona intestinalis]) HSP 1 Score: 93.9745 bits (232), Expect = 9.353e-17 Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 0
Query: 453 MDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLC-DDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRL 581
+D+A S PA A P P G K L++V+GNLC+ + Q VRE +GLPL+L+ CN+D NPF+R+WAV +R LC ++ EN+ +++ L+ VV++P+ Q G++ +V ++ G L +
Sbjct: 311 LDKA-SVFAPAEKASPGAGAKEQCSPVA-GFKRDLVRVIGNLCYRNPPLQNKVRELEGLPLILDSCNIDDNNPFIRQWAVFTIRNLCENNAENQAILSRLERHSVVENPIFQNSGLE--VVESDDGHLSI 436
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1191063401|ref|XP_020910071.1| (ataxin-10-like [Exaiptasia pallida]) HSP 1 Score: 92.4337 bits (228), Expect = 1.301e-16 Identity = 42/116 (36.21%), Postives = 72/116 (62.07%), Query Frame = 0
Query: 465 TAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVR-FLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRL 579
T+ P Q S L G K L++++GN+C+ H Q+MVRE++G+PL+L+HCN+D NP++ +WAV +R L D+ EN++++ASL + V + + + G+D + +L
Sbjct: 254 TSAPQ-CQDSGELSPSHGFKRDLVRLIGNMCYKHRNNQDMVREKEGIPLILDHCNIDDHNPYICQWAVFTLRNLLQDNSENQQIVASLDKRGVADNSRLHQFGIDVEKTVDGKAKL 368
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|299116032|emb|CBN74448.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 93.9745 bits (232), Expect = 1.787e-16 Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 0
Query: 431 VISLILQLLQGEGGKA--NGEIPPMDRARSHGGPASTA--------GPDGTQPSPSLP---TPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVD 568
++ L L+LL G GG A N +R G AS A P+G+ LP P GRK L++V+GN C R+Q++VRE+ GLPLVLNHC VD NP LRE+A++ +R LC+ + N+ I+SLQ Q +P M+E D
Sbjct: 453 LVPLCLRLLHGCGGAAEPNPAASSGQFSRKEGSTASAAVATGAGDTAPNGSHHRGELPDGAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCKVDEANPLLREYALLALRNLCEGNAANQASISSLQPQGC--TPGMEEALAD 602
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|999985453|gb|KXJ24594.1| (Ataxin-10 [Exaiptasia pallida]) HSP 1 Score: 92.8189 bits (229), Expect = 4.854e-16 Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 0
Query: 465 TAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVR-FLCDDPENRRVIASLQGQEVVQSPVMQEMGVDA 569
T+ P Q S L G K L++++GN+C+ H Q+MVRE++G+PL+L+HCN+D NP++ +WAV +R L D+ EN++++ASL + V + + + G+D
Sbjct: 543 TSAPQ-CQDSGELSPSHGFKRDLVRLIGNMCYKHRNNQDMVREKEGIPLILDHCNIDDHNPYICQWAVFTLRNLLQDNSENQQIVASLDKRGVADNSRLHQFGIDV 647
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|585666275|ref|XP_006817076.1| (PREDICTED: ataxin-10-like [Saccoglossus kowalevskii]) HSP 1 Score: 90.8929 bits (224), Expect = 1.261e-15 Identity = 39/107 (36.45%), Postives = 69/107 (64.49%), Query Frame = 0
Query: 482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRS 587
G K LI+++GN+C+ + Q+MVR +G+PL+L HCN+D NPF+ +WA+ + +C+ + +N+ VIAS+Q Q V ++E+GVD V G++ + +++
Sbjct: 399 GFKRDLIRLIGNMCYKNKDNQDMVRISEGIPLILEHCNIDEHNPFISQWAIFAIHNICEQNADNQDVIASMQNQGVADCKQLKELGVD---VQERDGKIYVKTTKKT 502
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1198301576|gb|OUM58607.1| (hypothetical protein PIROE2DRAFT_64298 [Piromyces sp. E2]) HSP 1 Score: 87.8113 bits (216), Expect = 1.747e-15 Identity = 41/105 (39.05%), Postives = 71/105 (67.62%), Query Frame = 0
Query: 484 KTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLC-DDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRS 587
K+ ++ ++ +C+ + Q+ +RE GLPL+L +CN+D+ NP+++E +V +R LC +PEN+++I SL+ + V +S + EMG+DA + E G +LHVKR S
Sbjct: 177 KSDIMTIISGICYDCKQIQDEIRELGGLPLILANCNIDNNNPYIKERSVFAIRNLCHKNPENQKIIDSLEAKGVDKSVNLDEMGIDAEI--DENG--KLHVKRLS 277
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1069795897|ref|XP_018322751.1| (PREDICTED: ataxin-10 isoform X2 [Agrilus planipennis]) HSP 1 Score: 84.3445 bits (207), Expect = 2.636e-15 Identity = 37/87 (42.53%), Postives = 60/87 (68.97%), Query Frame = 0
Query: 482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDP-ENRRVIASLQGQEVVQSPVMQEMGV 567
G K LI+++ N+C H Q+ VRE G+ ++L+ CN+D++NPF+ +W + + LC++ EN+++IASL Q VV S V+QE+GV
Sbjct: 73 GFKVDLIRMISNMCWKHKENQDFVREMDGIAVILDCCNIDAKNPFIIQWVIFAIHNLCENNLENQKIIASLNKQGVVDSEVLQEVGV 159
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|260812423|ref|XP_002600920.1| (hypothetical protein BRAFLDRAFT_215109 [Branchiostoma floridae] >gi|229286210|gb|EEN56932.1| hypothetical protein BRAFLDRAFT_215109, partial [Branchiostoma floridae]) HSP 1 Score: 81.6481 bits (200), Expect = 4.353e-15 Identity = 33/88 (37.50%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVD 568
G K LI++LGN+C + Q+ VRE +G+PL+L+HCN+D NP++ +WA+ +R LC+ + +N+ VIA L+ + + + + + G++
Sbjct: 8 GLKRDLIRLLGNMCFQNTSNQDKVRELEGIPLILDHCNIDDHNPYISQWAIFTIRNLCEGNHDNQAVIAGLEDKGLADNVALNDFGIE 95
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|470518991|ref|XP_004353412.1| (spinocerbellar ataxia type 10 family protein [Acanthamoeba castellanii str. Neff] >gi|440802970|gb|ELR23884.1| spinocerbellar ataxia type 10 family protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 89.3521 bits (220), Expect = 4.442e-15 Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 0
Query: 480 PEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPE-NRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRL 581
P K L++V+ N+ H H Q++VR +G+PLVLN C VD NP++REW ++ VR LC+D E N+++I+S+Q V +P + MG+ V E G+ RL
Sbjct: 479 PPAMKRDLVRVVANMVHAHTANQDLVRTLEGIPLVLNCCQVDDLNPYMREWGILAVRNLCEDNEANQQIISSMQYVGVADNPELTRMGLK---VVMEGGQFRL 578 The following BLAST results are available for this feature:
BLAST of EWM27331.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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