EWM27331.1, cds3343 (CDS) Nannochloropsis gaditana

Overview
NameEWM27331.1
Unique Namecds3343
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:191361..191558 +
Alignment locationCM002461.1:191674..193266 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27331.1
Productataxin 10
Orig transcript idgnl|cribi|Naga_100393g3.8505.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:191361..191558 +
CM002461.1supercontigCM002461.1:191674..193266 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
IPR019156Ataxin-10_domain
Homology
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|585109532|gb|EWM27331.1| (ataxin 10 [Nannochloropsis gaditana])

HSP 1 Score: 1217.99 bits (3150), Expect = 0.000e+0
Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0
Query:    1 MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP 596
            MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP
Sbjct:    1 MTNALGLHATQIHASMSWLREYREEEPEEVEEGHAKAHSGLLQLATAGKVTMELREARDACRIGGQATQTQLFPLYGKVKNILSRILFFYTSFNAVDDRFGVAEADTREVRRMALTALQFLANVTAGNAETSERLFKDARQGAIMDWLEGFGQDRKLLTCTCVVVHNYLACASQKKAAVKDFLEEAALVTKLLRLVLPPSTPSYPSSSVSSSCRAMGISAPRHHDRHRGPAGQAEGEEEDPVFEWIYLILLKVLEAQEGLRAFNKSGLDRYALHKEMLTSIRSVSAKAPGPRRAPPPIFTAEQLVLLHLAEHTLTDRFLETQGQQRDDAPLLLRDGGVWVLELVHRVKEYLHARRFSARPSTASGAKASKGKEGQYEQARQPEWLLLDEAVATVMRLIGTLLAREERLEGGREKGKEDGRELRDLLLEHDVISLILQLLQGEGGKANGEIPPMDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRSVEGGDKAGP 596          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|459178395|ref|XP_002122907.2| (PREDICTED: ataxin-10-like isoform X1 [Ciona intestinalis])

HSP 1 Score: 93.9745 bits (232), Expect = 9.353e-17
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 0
Query:  453 MDRARSHGGPASTAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLC-DDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRL 581
            +D+A S   PA  A P         P   G K  L++V+GNLC+ +   Q  VRE +GLPL+L+ CN+D  NPF+R+WAV  +R LC ++ EN+ +++ L+   VV++P+ Q  G++  +V ++ G L +
Sbjct:  311 LDKA-SVFAPAEKASPGAGAKEQCSPVA-GFKRDLVRVIGNLCYRNPPLQNKVRELEGLPLILDSCNIDDNNPFIRQWAVFTIRNLCENNAENQAILSRLERHSVVENPIFQNSGLE--VVESDDGHLSI 436          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1191063401|ref|XP_020910071.1| (ataxin-10-like [Exaiptasia pallida])

HSP 1 Score: 92.4337 bits (228), Expect = 1.301e-16
Identity = 42/116 (36.21%), Postives = 72/116 (62.07%), Query Frame = 0
Query:  465 TAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVR-FLCDDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRL 579
            T+ P   Q S  L    G K  L++++GN+C+ H   Q+MVRE++G+PL+L+HCN+D  NP++ +WAV  +R  L D+ EN++++ASL  + V  +  + + G+D       + +L
Sbjct:  254 TSAPQ-CQDSGELSPSHGFKRDLVRLIGNMCYKHRNNQDMVREKEGIPLILDHCNIDDHNPYICQWAVFTLRNLLQDNSENQQIVASLDKRGVADNSRLHQFGIDVEKTVDGKAKL 368          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|299116032|emb|CBN74448.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 1.787e-16
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 0
Query:  431 VISLILQLLQGEGGKA--NGEIPPMDRARSHGGPASTA--------GPDGTQPSPSLP---TPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVD 568
            ++ L L+LL G GG A  N        +R  G  AS A         P+G+     LP    P GRK  L++V+GN C    R+Q++VRE+ GLPLVLNHC VD  NP LRE+A++ +R LC+ +  N+  I+SLQ Q    +P M+E   D
Sbjct:  453 LVPLCLRLLHGCGGAAEPNPAASSGQFSRKEGSTASAAVATGAGDTAPNGSHHRGELPDGAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCKVDEANPLLREYALLALRNLCEGNAANQASISSLQPQGC--TPGMEEALAD 602          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|999985453|gb|KXJ24594.1| (Ataxin-10 [Exaiptasia pallida])

HSP 1 Score: 92.8189 bits (229), Expect = 4.854e-16
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 0
Query:  465 TAGPDGTQPSPSLPTPEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVR-FLCDDPENRRVIASLQGQEVVQSPVMQEMGVDA 569
            T+ P   Q S  L    G K  L++++GN+C+ H   Q+MVRE++G+PL+L+HCN+D  NP++ +WAV  +R  L D+ EN++++ASL  + V  +  + + G+D 
Sbjct:  543 TSAPQ-CQDSGELSPSHGFKRDLVRLIGNMCYKHRNNQDMVREKEGIPLILDHCNIDDHNPYICQWAVFTLRNLLQDNSENQQIVASLDKRGVADNSRLHQFGIDV 647          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|585666275|ref|XP_006817076.1| (PREDICTED: ataxin-10-like [Saccoglossus kowalevskii])

HSP 1 Score: 90.8929 bits (224), Expect = 1.261e-15
Identity = 39/107 (36.45%), Postives = 69/107 (64.49%), Query Frame = 0
Query:  482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRS 587
            G K  LI+++GN+C+ +   Q+MVR  +G+PL+L HCN+D  NPF+ +WA+  +  +C+ + +N+ VIAS+Q Q V     ++E+GVD   V    G++ +   +++
Sbjct:  399 GFKRDLIRLIGNMCYKNKDNQDMVRISEGIPLILEHCNIDEHNPFISQWAIFAIHNICEQNADNQDVIASMQNQGVADCKQLKELGVD---VQERDGKIYVKTTKKT 502          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1198301576|gb|OUM58607.1| (hypothetical protein PIROE2DRAFT_64298 [Piromyces sp. E2])

HSP 1 Score: 87.8113 bits (216), Expect = 1.747e-15
Identity = 41/105 (39.05%), Postives = 71/105 (67.62%), Query Frame = 0
Query:  484 KTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLC-DDPENRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRLHVKRRS 587
            K+ ++ ++  +C+   + Q+ +RE  GLPL+L +CN+D+ NP+++E +V  +R LC  +PEN+++I SL+ + V +S  + EMG+DA +   E G  +LHVKR S
Sbjct:  177 KSDIMTIISGICYDCKQIQDEIRELGGLPLILANCNIDNNNPYIKERSVFAIRNLCHKNPENQKIIDSLEAKGVDKSVNLDEMGIDAEI--DENG--KLHVKRLS 277          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|1069795897|ref|XP_018322751.1| (PREDICTED: ataxin-10 isoform X2 [Agrilus planipennis])

HSP 1 Score: 84.3445 bits (207), Expect = 2.636e-15
Identity = 37/87 (42.53%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDP-ENRRVIASLQGQEVVQSPVMQEMGV 567
            G K  LI+++ N+C  H   Q+ VRE  G+ ++L+ CN+D++NPF+ +W +  +  LC++  EN+++IASL  Q VV S V+QE+GV
Sbjct:   73 GFKVDLIRMISNMCWKHKENQDFVREMDGIAVILDCCNIDAKNPFIIQWVIFAIHNLCENNLENQKIIASLNKQGVVDSEVLQEVGV 159          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|260812423|ref|XP_002600920.1| (hypothetical protein BRAFLDRAFT_215109 [Branchiostoma floridae] >gi|229286210|gb|EEN56932.1| hypothetical protein BRAFLDRAFT_215109, partial [Branchiostoma floridae])

HSP 1 Score: 81.6481 bits (200), Expect = 4.353e-15
Identity = 33/88 (37.50%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  482 GRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCD-DPENRRVIASLQGQEVVQSPVMQEMGVD 568
            G K  LI++LGN+C  +   Q+ VRE +G+PL+L+HCN+D  NP++ +WA+  +R LC+ + +N+ VIA L+ + +  +  + + G++
Sbjct:    8 GLKRDLIRLLGNMCFQNTSNQDKVRELEGIPLILDHCNIDDHNPYISQWAIFTIRNLCEGNHDNQAVIAGLEDKGLADNVALNDFGIE 95          
BLAST of EWM27331.1 vs. NCBI_GenBank
Match: gi|470518991|ref|XP_004353412.1| (spinocerbellar ataxia type 10 family protein [Acanthamoeba castellanii str. Neff] >gi|440802970|gb|ELR23884.1| spinocerbellar ataxia type 10 family protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 89.3521 bits (220), Expect = 4.442e-15
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 0
Query:  480 PEGRKTRLIQVLGNLCHGHGRAQEMVREQQGLPLVLNHCNVDSENPFLREWAVVCVRFLCDDPE-NRRVIASLQGQEVVQSPVMQEMGVDARLVAAEQGRLRL 581
            P   K  L++V+ N+ H H   Q++VR  +G+PLVLN C VD  NP++REW ++ VR LC+D E N+++I+S+Q   V  +P +  MG+    V  E G+ RL
Sbjct:  479 PPAMKRDLVRVVANMVHAHTANQDLVRTLEGIPLVLNCCQVDDLNPYMREWGILAVRNLCEDNEANQQIISSMQYVGVADNPELTRMGLK---VVMEGGQFRL 578          
The following BLAST results are available for this feature:
BLAST of EWM27331.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109532|gb|EWM27331.1|0.000e+0100.00ataxin 10 [Nannochloropsis gaditana][more]
gi|459178395|ref|XP_002122907.2|9.353e-1737.69PREDICTED: ataxin-10-like isoform X1 [Ciona intest... [more]
gi|1191063401|ref|XP_020910071.1|1.301e-1636.21ataxin-10-like [Exaiptasia pallida][more]
gi|299116032|emb|CBN74448.1|1.787e-1640.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|999985453|gb|KXJ24594.1|4.854e-1638.68Ataxin-10 [Exaiptasia pallida][more]
gi|585666275|ref|XP_006817076.1|1.261e-1536.45PREDICTED: ataxin-10-like [Saccoglossus kowalevski... [more]
gi|1198301576|gb|OUM58607.1|1.747e-1539.05hypothetical protein PIROE2DRAFT_64298 [Piromyces ... [more]
gi|1069795897|ref|XP_018322751.1|2.636e-1542.53PREDICTED: ataxin-10 isoform X2 [Agrilus planipenn... [more]
gi|260812423|ref|XP_002600920.1|4.353e-1537.50hypothetical protein BRAFLDRAFT_215109 [Branchiost... [more]
gi|470518991|ref|XP_004353412.1|4.442e-1541.75spinocerbellar ataxia type 10 family protein [Acan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3352rna3352Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications