EWM27335.1, cds3339 (CDS) Nannochloropsis gaditana

Overview
NameEWM27335.1
Unique Namecds3339
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:178402..179559 +

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Properties
Property NameValue
Protein idEWM27335.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101019g2.8722.mrna
GbkeyCDS
End range.
End range179559
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:178402..179559 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR007317UPF0363
Homology
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|585109539|gb|EWM27335.1| (hypothetical protein Naga_101019g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
            MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG
Sbjct:    1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386          
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|325191408|emb|CCA26185.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 77.7962 bits (190), Expect = 2.537e-12
Identity = 64/217 (29.49%), Postives = 96/217 (44.24%), Query Frame = 0
Query:  172 SKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQ--HGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
            SKE  + L+   +W+A E   ++G  E+    L LA+AY    E+ +AA+   H E       P+       + + L  WS EGY  E DL++AR+VL  L       L  L  A  L    Q     A C   +PL H++  ++  L   A                ++QLL  RY  AL RD + EK + +IGE  +G+ P  + + + L    G
Sbjct:  143 SKELASFLRNAVKWSAAEGSRKQGHPEI---QLLLARAYFKGMEYKQAAKHYLHAE------KPE------EFAEFLLTWSKEGYPSEFDLYIARSVLQLL------CLENLKDANKLFETFQIK---ANCSLETPLCHFIRFLLRTLERDALP--------------LYQLLKDRYAAALTRDKSFEKYLDKIGENFYGVQPQRSGLSSLLDLFSG 321          
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|635371320|emb|CCI40475.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 69.707 bits (169), Expect = 1.360e-9
Identity = 59/212 (27.83%), Postives = 89/212 (41.98%), Query Frame = 0
Query:  172 SKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQ--HGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFL 381
            SKE  + L+   +W+A E   + G  ++    L LA+AY   G+  +AA+   H E       P+       +   L  WS EGY  E DL++AR VL  L       L  L  A  L       +        +PL H++  ++  L   A                ++QLL  RY  AL RD + EK + RIG   +G+ P  + + + L
Sbjct:  143 SKELASFLQNAVKWSAAEGTRKHGHPQI---QLFLARAYFRGGDHKQAAKHYLHAE------KPE------EFADFLLHWSNEGYPSEVDLYIARGVLQLL------CLENLKDANKLFETFHVKAKLENVTLETPLCHFIRFLLVTLERDALP--------------LYQLLQDRYAAALARDKSFEKYLERIGVNYYGVQPQQSGLNSIL 319          
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|298714388|emb|CBJ27445.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 2.130e-9
Identity = 60/187 (32.09%), Postives = 80/187 (42.78%), Query Frame = 0
Query:  209 AYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMT---------AAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
            A+  R   AR+A   G LA              Y  +++ W+A+GY GE DLF+ RAVLH L        G L  A A             ++ASS     LE SPL H+   VV L   ++       G    +    F  L   Y+ +L RD  L+ L+ RIG+  FG+ P   P    L  MLG
Sbjct:  128 AFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLE-SPLWHFTRFVVELCQVKS-----LAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKP---PQPGGLMGMLG 305          
The following BLAST results are available for this feature:
BLAST of EWM27335.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109539|gb|EWM27335.1|0.000e+0100.00hypothetical protein Naga_101019g2, partial [Nanno... [more]
gi|325191408|emb|CCA26185.1|2.537e-1229.49conserved hypothetical protein [Albugo laibachii N... [more]
gi|635371320|emb|CCI40475.1|1.360e-927.83unnamed protein product [Albugo candida][more]
gi|298714388|emb|CBJ27445.1|2.130e-932.09conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3348rna3348Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications