EWM27335.1, cds3339 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|585109539|gb|EWM27335.1| (hypothetical protein Naga_101019g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0 Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query: 1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG
Sbjct: 1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMANNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|325191408|emb|CCA26185.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 77.7962 bits (190), Expect = 2.537e-12 Identity = 64/217 (29.49%), Postives = 96/217 (44.24%), Query Frame = 0
Query: 172 SKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQ--HGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
SKE + L+ +W+A E ++G E+ L LA+AY E+ +AA+ H E P+ + + L WS EGY E DL++AR+VL L L L A L Q A C +PL H++ ++ L A ++QLL RY AL RD + EK + +IGE +G+ P + + + L G
Sbjct: 143 SKELASFLRNAVKWSAAEGSRKQGHPEI---QLLLARAYFKGMEYKQAAKHYLHAE------KPE------EFAEFLLTWSKEGYPSEFDLYIARSVLQLL------CLENLKDANKLFETFQIK---ANCSLETPLCHFIRFLLRTLERDALP--------------LYQLLKDRYAAALTRDKSFEKYLDKIGENFYGVQPQRSGLSSLLDLFSG 321
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|635371320|emb|CCI40475.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 69.707 bits (169), Expect = 1.360e-9 Identity = 59/212 (27.83%), Postives = 89/212 (41.98%), Query Frame = 0
Query: 172 SKERVALLKGLTRWAAEEEEAEEGGKEVLELGLELAKAYSARGEWARAAQQ--HGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFL 381
SKE + L+ +W+A E + G ++ L LA+AY G+ +AA+ H E P+ + L WS EGY E DL++AR VL L L L A L + +PL H++ ++ L A ++QLL RY AL RD + EK + RIG +G+ P + + + L
Sbjct: 143 SKELASFLQNAVKWSAAEGTRKHGHPQI---QLFLARAYFRGGDHKQAAKHYLHAE------KPE------EFADFLLHWSNEGYPSEVDLYIARGVLQLL------CLENLKDANKLFETFHVKAKLENVTLETPLCHFIRFLLVTLERDALP--------------LYQLLQDRYAAALARDKSFEKYLERIGVNYYGVQPQQSGLNSIL 319
BLAST of EWM27335.1 vs. NCBI_GenBank
Match: gi|298714388|emb|CBJ27445.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.9366 bits (167), Expect = 2.130e-9 Identity = 60/187 (32.09%), Postives = 80/187 (42.78%), Query Frame = 0
Query: 209 AYSARGEWARAAQQHGELARQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMT---------AAQASSAFAPCLETSPLLHYVGLVVALLGARAGEGGREGGREGGKEGEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386
A+ R AR+A G LA Y +++ W+A+GY GE DLF+ RAVLH L G L A A ++ASS LE SPL H+ VV L ++ G + F L Y+ +L RD L+ L+ RIG+ FG+ P P L MLG
Sbjct: 128 AFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLE-SPLWHFTRFVVELCQVKS-----LAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKP---PQPGGLMGMLG 305 The following BLAST results are available for this feature:
BLAST of EWM27335.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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