EWM27346.1, cds3333 (CDS) Nannochloropsis gaditana

Overview
NameEWM27346.1
Unique Namecds3333
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:162867..162893 +
Alignment locationCM002461.1:163012..164302 +
Alignment locationCM002461.1:164463..164539 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27346.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g11.10116.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:162867..162893 +
CM002461.1supercontigCM002461.1:163012..164302 +
CM002461.1supercontigCM002461.1:164463..164539 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27346.1 vs. NCBI_GenBank
Match: gi|585109551|gb|EWM27346.1| (hypothetical protein Naga_100226g11 [Nannochloropsis gaditana])

HSP 1 Score: 947.192 bits (2447), Expect = 0.000e+0
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 0 
Query:    1 MAALFLVDADIAWLKCGIKSGWNLVVPTEGIEGGKGLVPEDMDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLGCQSFSIRRLQYESVDRACFLVRTTVKKVASTGTSASVSMAAGDGFSRQQHYLWLLSRQKEGEWKKCWLTDAIISAEHGLLSLWNLPLCEEGRGEDRGEHCVQKEIESSLGITKDDRVSCLIPFRVEKCNTKTRK 464
            MAALFLVDADIAWLKCGIKSGWNLVVPTEGIEGGKGLVPEDMDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLGCQSFSIRRLQYESVDRACFLVRTTVKKVASTGTSASVSMAAGDGFSRQQHYLWLLSRQKEGEWKKCWLTDAIISAEHGLLSLWNLPLCEEGRGEDRGEHCVQKEIESSLGITKDDRVSCLIPFRVEKCNTKTRK
Sbjct:    1 MAALFLVDADIAWLKCGIKSGWNLVVPTEGIEGGKGLVPEDMDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLGCQSFSIRRLQYESVDRACFLVRTTVKKVASTGTSASVSMAAGDGFSRQQHYLWLLSRQKEGEWKKCWLTDAIISAEHGLLSLWNLPLCEEGRGEDRGEHCVQKEIESSLGITKDDRVSCLIPFRVEKCNTKTRK 464
[Close]
BLAST of EWM27346.1 vs. NCBI_GenBank
Match: gi|553189749|ref|XP_005855065.1| (hypothetical protein NGA_0354000 [Nannochloropsis gaditana CCMP526] >gi|422294001|gb|EKU21301.1| hypothetical protein NGA_0354000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 585.874 bits (1509), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0 
Query:   42 MDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLG 330
            MDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLG
Sbjct:    1 MDTRARRMRNLDECSSKRHAPGNTACCVTQPASLLLTRLNDDLLARVLSFTAQWHVIRSISGSTRTFSDLLVRSLAIKPHTPLHVLHRVMTRVGENVLVLDLTGNRHLNDASLRHILEETCPRLHHLVLNYCRQLTPAVVPILSRVPRVAVRGCWRLLTPSPSLSSDVVLELQLLALQQNDRHRHDGVAKYFEFASSANRLVGPGQDGEEEGGEEEGEDTKGGGSSAEGRGSISRPGMSTGGALNNRRCVPGTGAVVEEGRESTTEGRLPLLSLRAFHVVYDRLQPLLG 289
The following BLAST results are available for this feature:
BLAST of EWM27346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109551|gb|EWM27346.1|0.000e+0100.00hypothetical protein Naga_100226g11 [Nannochlorops... [more]
gi|553189749|ref|XP_005855065.1|0.000e+0100.00hypothetical protein NGA_0354000 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3342rna3342Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications