EWM27345.1, cds3332 (CDS) Nannochloropsis gaditana

Overview
NameEWM27345.1
Unique Namecds3332
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:160523..160660 +
Alignment locationCM002461.1:160743..161289 +
Alignment locationCM002461.1:161455..161600 +
Alignment locationCM002461.1:161743..161875 +
Alignment locationCM002461.1:162067..162161 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27345.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g10.10115.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:160523..160660 +
CM002461.1supercontigCM002461.1:160743..161289 +
CM002461.1supercontigCM002461.1:161455..161600 +
CM002461.1supercontigCM002461.1:161743..161875 +
CM002461.1supercontigCM002461.1:162067..162161 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|585109550|gb|EWM27345.1| (hypothetical protein Naga_100226g10 [Nannochloropsis gaditana])

HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query:    1 MRLIPRYINMHAGDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 352
            MRLIPRYINMHAGDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA
Sbjct:    1 MRLIPRYINMHAGDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 352          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|553189746|ref|XP_005855064.1| (hypothetical protein NGA_0353900, partial [Nannochloropsis gaditana CCMP526] >gi|422294000|gb|EKU21300.1| hypothetical protein NGA_0353900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query:   14 DKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 352
            DKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA
Sbjct:    1 DKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 339          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|553194135|ref|XP_005855893.1| (hypothetical protein NGA_0557200 [Nannochloropsis gaditana CCMP526] >gi|422293169|gb|EKU20469.1| hypothetical protein NGA_0557200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.54 bits (937), Expect = 9.851e-124
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:   13 GDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEE 183
            GDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEE
Sbjct:   33 GDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEE 203          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|553176944|ref|XP_005852419.1| (hypothetical protein NGA_0730100, partial [Nannochloropsis gaditana CCMP526] >gi|422296114|gb|EKU23413.1| hypothetical protein NGA_0730100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 250.366 bits (638), Expect = 1.444e-80
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:  230 EEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 352
            EEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA
Sbjct:    1 EEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFIKA 123          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|299471085|emb|CBN78944.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.383 bits (272), Expect = 9.092e-24
Identity = 83/237 (35.02%), Postives = 103/237 (43.46%), Query Frame = 0
Query:   48 FYLFTLELLTIALVFSKALHHNAGKKYVRV-VQPGCHVAWADMNGDHS------TVACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILRE 277
            F  FT  L+ +A      L  NAG K+VR  VQ GC   +A++    S       + CC+                   S   DG    +C    S  TK LTS LA V+P     +N    A   W   G    + R +              W     R  LY AVI+ RT  L + LN +Q  VQ+EE   CWY+ LR  G+C E FDFADH VL + QY AIQ FE   ILRE
Sbjct:    5 FLTFTAVLVAVA---CAGLSRNAGSKFVRTRVQQGCRRNYANVATARSREKPSLDLICCT------------------GSVEDDG----VCIGGGSRTTKTLTSKLAFVIPLAALAVN----AFCDWLAGGATPSRTRAR--------------WN----RFLLYVAVILGRTLGLYLGLNYIQGLVQSEESSNCWYAHLRRSGKCSEHFDFADHVVLAVCQYYAIQVFELCCILRE 194          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|1173927425|gb|OQR81387.1| (hypothetical protein THRCLA_11781 [Thraustotheca clavata])

HSP 1 Score: 97.8265 bits (242), Expect = 6.166e-20
Identity = 79/267 (29.59%), Postives = 119/267 (44.57%), Query Frame = 0
Query:   73 KYVRVVQPGCHVAWADMNGDHSTVACCSLPSSSTTFLSFLLGGDDPPS--EGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACL-ISLLSLVGFYDTVTYFHTRTESLMGVLISLVTVQLPLMLVASG 336
            KY RV  P C   W D+   +    CC        ++    G D+  S   GQ  W  P+ A         +  GL + LP VT                                  R   A++     R+GLY  ++++RTA+L    N V+  +   E  +CWYS LR + RC   FD ADH VL+++ +LAI  FE   ILR  ++ L    CL++  L +  LS+   Y T   FH+R E+L+G++++ + V LPL L++  
Sbjct:   30 KYTRVSGP-CSSNWLDVRNPNGVPVCCDDTFQPPCYI----GMDELHSVTRGQGAWIMPMVAVL-------INFGLTMFLPNVT---------------------------------PRHMTALYN----RIGLYFVLMVYRTAILYGAFNIVEQAIFPAES-SCWYSRLRKNKRCINSFDHADHIVLYMTHFLAISCFEW-KILRREKTHLLKRRCLSAWLLCVMFLSIYAIYHTAYSFHSRWENLVGMVLAQIFVMLPLYLLSEN 245          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|325182103|emb|CCA16556.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 93.5893 bits (231), Expect = 4.070e-18
Identity = 89/314 (28.34%), Postives = 140/314 (44.59%), Query Frame = 0
Query:   59 ALVFSKALH--HNAGKKYVRVVQPGCHVAWADMNGDHST----VACCSLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWV------QAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLH---LVTCLASACLISLLSLVGF-YDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRL------RQHRYLRISHFI 350
             ++FS  L+  +    KYVRV Q  C   W  +N D S       CCS  ++S +          P   G +     L   A S +        A V PF+   +N + S + G                     +   E I    RR L LYA +++FR  VL  LLN V+  +        +   +CWY  LRHD +C + FDF+DH +L ++ Y+AI  FE  A+  E+  L +    +  L  +  + L++ V F Y T  YFHT  E+++ ++++ + V  PL L++  RL      RQ  +L++  F+
Sbjct:   37 VILFSLILYTSYYLPYKYVRV-QGRCESNWIQLNKDGSASQQGTICCSDDTASIS----------PCYRGME-----LSKIAVSVKG-------AWVFPFLPLIINYI-SVILG--------------------PKPSLEHIRVLTRRAL-LYAGIMLFRLMVLYKLLNGVEKRIVPFILPNHDAKKSCWYRFLRHDQKCVDAFDFSDHLILLVTHYIAIPLFEWFALAIESPRLWYNNLRIVVLRLSVFMELITAVYFIYITTKYFHTPLENVIALVLTEICVLYPLYLLSQDRLANFVTKRQLSWLQLQWFV 305          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|567954011|gb|ETK79652.1| (hypothetical protein L915_14512 [Phytophthora parasitica] >gi|567982658|gb|ETL33070.1| hypothetical protein L916_14419 [Phytophthora parasitica])

HSP 1 Score: 92.0485 bits (227), Expect = 1.323e-17
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 0
Query:  200 RRLGLYAAVIMFRTAVLLMLLNRVQA----WVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGF--YDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFI 350
            RR  LY A++ FRT VL M L  V+             +CWY+ LR   RC   FD +DH VL +S YLAI  FE  A+  E+     L   L  A LI +  +  +  + T +YFHT  E+L+G++I+   V  PLML+       +++LR+S+F+
Sbjct:  137 RRGLLYVAIMAFRTVVLYMGLGLVEKRLIHLFMGHSDHSCWYAELRRGKRCPADFDHSDHIVLLVSHYLAIPLFEWFAVSVESAG-PSLKRTLLRAWLIIVCGMASYLLFFTASYFHTTAENLVGLIIAQGCVMAPLMLLTQDYFSSYKWLRLSNFV 292          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|570320275|gb|ETO68223.1| (hypothetical protein F444_14929 [Phytophthora parasitica P1976] >gi|570944130|gb|ETP09387.1| hypothetical protein F441_14758 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 92.0485 bits (227), Expect = 1.490e-17
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 0
Query:  200 RRLGLYAAVIMFRTAVLLMLLNRVQA----WVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGF--YDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFI 350
            RR  LY A++ FRT VL M L  V+             +CWY+ LR   RC   FD +DH VL +S YLAI  FE  A+  E+     L   L  A LI +  +  +  + T +YFHT  E+L+G++I+   V  PLML+       +++LR+S+F+
Sbjct:  137 RRGLLYVAIMAFRTVVLYMGLGLVEKRLIHLFMGHSDHSCWYAELRRGKRCPADFDHSDHIVLLVSHYLAIPLFEWFAVSVESAG-PSLKRTLLRAWLIIVCGMASYLLFFTASYFHTTVENLVGLIIAQGCVMAPLMLLTQDYFSSYKWLRLSNFV 292          
BLAST of EWM27345.1 vs. NCBI_GenBank
Match: gi|675203601|ref|XP_008910685.1| (hypothetical protein PPTG_15377 [Phytophthora parasitica INRA-310] >gi|568089165|gb|ETN04015.1| hypothetical protein PPTG_15377 [Phytophthora parasitica INRA-310])

HSP 1 Score: 92.0485 bits (227), Expect = 1.519e-17
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = 0
Query:  200 RRLGLYAAVIMFRTAVLLMLLNRVQA----WVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREARSLLHLVTCLASACLISLLSLVGF--YDTVTYFHTRTESLMGVLISLVTVQLPLMLVASGRLRQHRYLRISHFI 350
            RR  LY A++ FRT VL M L  V+             +CWY+ LR   RC   FD +DH VL +S YLAI  FE  A+  E+     L   L  A LI +  +  +  + T +YFHT  E+L+G++I+   V  PLML+       +++LR+S+F+
Sbjct:  137 RRGLLYVAIMAFRTVVLYMGLGLVEKRLIHLFMGHSDHSCWYAELRRGKRCPADFDHSDHIVLLVSHYLAIPLFEWFAVSVESAG-PSLKRTLLRAWLIIVCGMASYLLFFTASYFHTTAENLVGLIIAQGCVMAPLMLLTQDYFSSYKWLRLSNFV 292          
The following BLAST results are available for this feature:
BLAST of EWM27345.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109550|gb|EWM27345.1|0.000e+0100.00hypothetical protein Naga_100226g10 [Nannochlorops... [more]
gi|553189746|ref|XP_005855064.1|0.000e+0100.00hypothetical protein NGA_0353900, partial [Nannoch... [more]
gi|553194135|ref|XP_005855893.1|9.851e-124100.00hypothetical protein NGA_0557200 [Nannochloropsis ... [more]
gi|553176944|ref|XP_005852419.1|1.444e-80100.00hypothetical protein NGA_0730100, partial [Nannoch... [more]
gi|299471085|emb|CBN78944.1|9.092e-2435.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173927425|gb|OQR81387.1|6.166e-2029.59hypothetical protein THRCLA_11781 [Thraustotheca c... [more]
gi|325182103|emb|CCA16556.1|4.070e-1828.34conserved hypothetical protein [Albugo laibachii N... [more]
gi|567954011|gb|ETK79652.1|1.323e-1736.94hypothetical protein L915_14512 [Phytophthora para... [more]
gi|570320275|gb|ETO68223.1|1.490e-1736.94hypothetical protein F444_14929 [Phytophthora para... [more]
gi|675203601|ref|XP_008910685.1|1.519e-1736.94hypothetical protein PPTG_15377 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3341rna3341Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications