EWM27349.1, cds3324 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|585109558|gb|EWM27349.1| (bzip transcription [Nannochloropsis gaditana]) HSP 1 Score: 1118.61 bits (2892), Expect = 0.000e+0 Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0
Query: 1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW 562
MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW
Sbjct: 1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW 562
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|553177334|ref|XP_005852457.1| (hypothetical protein NGA_0709100 [Nannochloropsis gaditana CCMP526] >gi|422296076|gb|EKU23375.1| hypothetical protein NGA_0709100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 295.819 bits (756), Expect = 2.122e-94 Identity = 155/183 (84.70%), Postives = 158/183 (86.34%), Query Frame = 0
Query: 1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSP-------HFRGQPLPRRWPEQDEACRQGRPALAPLLPKG 176
MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSP H G+ R + GRP+L P PKG
Sbjct: 1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPISGASPSHGDGRSKTRH------VGKGGRPSL-PSYPKG 176
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|1173961441|gb|OQS07471.1| (bZIP transcription factor [Thraustotheca clavata]) HSP 1 Score: 64.6994 bits (156), Expect = 2.143e-7 Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 0
Query: 263 SSCSSSTSTGSSHSRSGGNE---DAELTSA---LAALERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKE 361
S CS+ TS+ +S R N+ D +L SA + +ERQ L+ +E KK+RRLI+NRM++Q HRER+K + L+ L AK++E+ ++ + + L N +K++
Sbjct: 60 SECST-TSSNASKKRKNTNDGMFDNDLGSAEEKIKEMERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMAKMKAQLEALMAENKRLKQD 167
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|673036152|ref|XP_008872037.1| (hypothetical protein H310_08159 [Aphanomyces invadans] >gi|574472476|gb|ETV99481.1| hypothetical protein H310_08159 [Aphanomyces invadans]) HSP 1 Score: 63.1586 bits (152), Expect = 7.017e-7 Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 0
Query: 290 LAALERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMK 359
+ +ERQ L+ +E KK+RRLI+NRM++Q HRER+K + L+ L AK++E+ AL+ + D L+ N +K
Sbjct: 109 IKEMERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMQALKAQLDALKAENTRLK 182
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|698801208|ref|XP_009833633.1| (hypothetical protein H257_09192 [Aphanomyces astaci] >gi|574111225|gb|ETV76721.1| hypothetical protein H257_09192 [Aphanomyces astaci]) HSP 1 Score: 63.1586 bits (152), Expect = 7.277e-7 Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0
Query: 293 LERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMK 359
+ERQ L+ +E KK+RRLI+NRM++Q HRER+K + L+ L AK++E+ AL+ + D L+ N +K
Sbjct: 111 MERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMQALKAQLDALKAENSRLK 181 The following BLAST results are available for this feature:
BLAST of EWM27349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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