EWM27349.1, cds3324 (CDS) Nannochloropsis gaditana

Overview
NameEWM27349.1
Unique Namecds3324
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:140766..142454 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27349.1
Productbzip transcription
Orig transcript idgnl|cribi|Naga_100394g5.5315.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:140766..142454 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|585109558|gb|EWM27349.1| (bzip transcription [Nannochloropsis gaditana])

HSP 1 Score: 1118.61 bits (2892), Expect = 0.000e+0
Identity = 562/562 (100.00%), Postives = 562/562 (100.00%), Query Frame = 0
Query:    1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW 562
            MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW
Sbjct:    1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPHFRGQPLPRRWPEQDEACRQGRPALAPLLPKGAACTKRPLPRSDSHTRSGGSIGKGESDGRRVVKSESFRSGRPPPLSCFMGPGADWEGGERSGKLQDAKMDRHTLKRPALEDIRSTPSSCSSSTSTGSSHSRSGGNEDAELTSALAALERQGLAPQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKELGSLRHALGVPGPEGGGGGLGSEGRGGRAGGWHASPSLSSLSEGTTSSESERSASSPSPSLTNSPVSLLHQGTEEAREGGGEGGYLSDDPSSQGGRGNGEAFARLFPFSRSPSPSAVYTPPTGAGEQRDGSQGGGVGEGGRGGGYGRGGFPRILEPSSSSLSWRRLPPSFWELSGAPPAAAVSAVFSGKAPSRLRPWPAHW 562          
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|553177334|ref|XP_005852457.1| (hypothetical protein NGA_0709100 [Nannochloropsis gaditana CCMP526] >gi|422296076|gb|EKU23375.1| hypothetical protein NGA_0709100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 295.819 bits (756), Expect = 2.122e-94
Identity = 155/183 (84.70%), Postives = 158/183 (86.34%), Query Frame = 0
Query:    1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSP-------HFRGQPLPRRWPEQDEACRQGRPALAPLLPKG 176
            MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSP       H  G+   R         + GRP+L P  PKG
Sbjct:    1 MATLSKEDFMDEDLDLSGLDEDLFIGLMGEGEGVNTFMLDDVREDGLTCPSVVDDSPSPFTAVSAAVATSFKAECMDDDQSSHVHGESSAEAFDLGVLPESIHAQQQDGIIPEQENQSGLKRNAHPRKLSDTGSLSSPHAQQSPISGASPSHGDGRSKTRH------VGKGGRPSL-PSYPKG 176          
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|1173961441|gb|OQS07471.1| (bZIP transcription factor [Thraustotheca clavata])

HSP 1 Score: 64.6994 bits (156), Expect = 2.143e-7
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 0
Query:  263 SSCSSSTSTGSSHSRSGGNE---DAELTSA---LAALERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMKKE 361
            S CS+ TS+ +S  R   N+   D +L SA   +  +ERQ L+     +E KK+RRLI+NRM++Q HRER+K  +  L+  L AK++E+  ++ + + L   N  +K++
Sbjct:   60 SECST-TSSNASKKRKNTNDGMFDNDLGSAEEKIKEMERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMAKMKAQLEALMAENKRLKQD 167          
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|673036152|ref|XP_008872037.1| (hypothetical protein H310_08159 [Aphanomyces invadans] >gi|574472476|gb|ETV99481.1| hypothetical protein H310_08159 [Aphanomyces invadans])

HSP 1 Score: 63.1586 bits (152), Expect = 7.017e-7
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 0
Query:  290 LAALERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMK 359
            +  +ERQ L+     +E KK+RRLI+NRM++Q HRER+K  +  L+  L AK++E+ AL+ + D L+  N  +K
Sbjct:  109 IKEMERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMQALKAQLDALKAENTRLK 182          
BLAST of EWM27349.1 vs. NCBI_GenBank
Match: gi|698801208|ref|XP_009833633.1| (hypothetical protein H257_09192 [Aphanomyces astaci] >gi|574111225|gb|ETV76721.1| hypothetical protein H257_09192 [Aphanomyces astaci])

HSP 1 Score: 63.1586 bits (152), Expect = 7.277e-7
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0
Query:  293 LERQGLA----PQELKKQRRLIKNRMASQQHRERQKQQLEHLQASLAAKEEEIMALRVERDVLRTANGEMK 359
            +ERQ L+     +E KK+RRLI+NRM++Q HRER+K  +  L+  L AK++E+ AL+ + D L+  N  +K
Sbjct:  111 MERQLLSLDPDSKEAKKKRRLIRNRMSAQLHRERKKAYVVQLEEQLQAKDDEMQALKAQLDALKAENSRLK 181          
The following BLAST results are available for this feature:
BLAST of EWM27349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109558|gb|EWM27349.1|0.000e+0100.00bzip transcription [Nannochloropsis gaditana][more]
gi|553177334|ref|XP_005852457.1|2.122e-9484.70hypothetical protein NGA_0709100 [Nannochloropsis ... [more]
gi|1173961441|gb|OQS07471.1|2.143e-736.70bZIP transcription factor [Thraustotheca clavata][more]
gi|673036152|ref|XP_008872037.1|7.017e-741.89hypothetical protein H310_08159 [Aphanomyces invad... [more]
gi|698801208|ref|XP_009833633.1|7.277e-743.66hypothetical protein H257_09192 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3333rna3333Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications