EWM27352.1, cds3323 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|585109561|gb|EWM27352.1| (protein of unknown function DUF4203 [Nannochloropsis gaditana]) HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0 Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query: 1 MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY
Sbjct: 1 MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|553194128|ref|XP_005855892.1| (hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526] >gi|422293168|gb|EKU20468.1| hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query: 51 MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY
Sbjct: 1 MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 289
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|511010909|gb|EPB92124.1| (hypothetical protein HMPREF1544_00949 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 62.7734 bits (151), Expect = 1.115e-7 Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 0
Query: 135 LLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVAL---SVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDA-EPFQGTEDMLPIVYAFFGCL---VLGMITQVCVSRKMRRQADGEEDR 312
++ A D G N + I L+ ++ G++ L C AV+L+ L G ++ + LL+ ++ WG A+++V +V LE + + TA +GS A G+D +KTGF E + Q L +K A ML GCL ++G + Q C+ R+ Q G +R
Sbjct: 71 IILTNAKSDYGSNTDTILLVVSIVVGILAGGLLCCCFFLAVYLLGALLGYMLALWLLSWNTNGLIQSN---WGRAILIVCFVIAGIVLMAFLERPMFIIATAFIGSFAIFCGIDVYVKTGFLEIVNQMLHAKSVDAAVTASSALRGMLG------GCLGLTLVGCLIQWCMIRRDSSQYRGWSER 246
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|1026994158|ref|XP_016607224.1| (hypothetical protein SPPG_05439 [Spizellomyces punctatus DAOM BR117] >gi|907093322|gb|KNC99184.1| hypothetical protein SPPG_05439 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 61.6178 bits (148), Expect = 7.150e-7 Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = 0
Query: 99 ITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQA-SYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLL---ESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPI--VYAFFGCLVLGMITQVCVSRKMRRQADGEEDR-KAQQRRRG 320
I M G++ F G + + GF FG V ++ L ++A + G +R+LI LI +I G++ +L LC+ + +F + + G + + +L++ G + + G + +V L+VVF L+ E +++ T+ G+ A G+D +K G + L + L S G+ + +P VY G +VL + + V M R R K RG
Sbjct: 234 ILMVTGIMFVFFGHKVFKAVIFIGGFYFGGVLAYVTLSALEARNVSFGTHRDLIFLIVSIIVGLLIGSLFLCVWRLGLFAIGAMLGFTLAIMILSL-GNDGLLHGV---GRTIFIVVLTVVFGILILFAERPILIIGTSFAGAFALFVGIDVFVKAGLVDALRRFLAS----------GSVEYVPAKGVYLELGGIVLVALVGIAVQWYMTRNKGHNHHRGKLAHGSRG 448 The following BLAST results are available for this feature:
BLAST of EWM27352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|