EWM27352.1, cds3323 (CDS) Nannochloropsis gaditana

Overview
NameEWM27352.1
Unique Namecds3323
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:137560..138579 +

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Properties
Property NameValue
Protein idEWM27352.1
Productprotein of unknown function DUF4203
Orig transcript idgnl|cribi|Naga_100394g4.5318.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:137560..138579 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025256DUF4203
Homology
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|585109561|gb|EWM27352.1| (protein of unknown function DUF4203 [Nannochloropsis gaditana])

HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query:    1 MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
            MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY
Sbjct:    1 MLSHHGNRGGCSSNSLQQSRTDKAHVISTLSTLQQTQPFLQAHTISSYAIMAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339          
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|553194128|ref|XP_005855892.1| (hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526] >gi|422293168|gb|EKU20468.1| hypothetical protein NGA_0557100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:   51 MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
            MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY
Sbjct:    1 MAIPGTRRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 289          
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|511010909|gb|EPB92124.1| (hypothetical protein HMPREF1544_00949 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 62.7734 bits (151), Expect = 1.115e-7
Identity = 51/185 (27.57%), Postives = 84/185 (45.41%), Query Frame = 0
Query:  135 LLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVAL---SVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDA-EPFQGTEDMLPIVYAFFGCL---VLGMITQVCVSRKMRRQADGEEDR 312
            ++   A  D G N + I L+  ++ G++   L  C    AV+L+  L G ++ + LL+       ++    WG A+++V      +V    LE  + +  TA +GS A   G+D  +KTGF E + Q L +K    A         ML       GCL   ++G + Q C+ R+   Q  G  +R
Sbjct:   71 IILTNAKSDYGSNTDTILLVVSIVVGILAGGLLCCCFFLAVYLLGALLGYMLALWLLSWNTNGLIQSN---WGRAILIVCFVIAGIVLMAFLERPMFIIATAFIGSFAIFCGIDVYVKTGFLEIVNQMLHAKSVDAAVTASSALRGMLG------GCLGLTLVGCLIQWCMIRRDSSQYRGWSER 246          
BLAST of EWM27352.1 vs. NCBI_GenBank
Match: gi|1026994158|ref|XP_016607224.1| (hypothetical protein SPPG_05439 [Spizellomyces punctatus DAOM BR117] >gi|907093322|gb|KNC99184.1| hypothetical protein SPPG_05439 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 61.6178 bits (148), Expect = 7.150e-7
Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = 0
Query:   99 ITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQA-SYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLL---ESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPI--VYAFFGCLVLGMITQVCVSRKMRRQADGEEDR-KAQQRRRG 320
            I M  G++  F G  + +      GF FG V  ++ L  ++A +   G +R+LI LI  +I G++  +L LC+ +  +F +  + G  + + +L++ G +     +   G  + +V L+VVF  L+   E  +++  T+  G+ A   G+D  +K G  + L + L S          G+ + +P   VY   G +VL  +  + V   M R       R K     RG
Sbjct:  234 ILMVTGIMFVFFGHKVFKAVIFIGGFYFGGVLAYVTLSALEARNVSFGTHRDLIFLIVSIIVGLLIGSLFLCVWRLGLFAIGAMLGFTLAIMILSL-GNDGLLHGV---GRTIFIVVLTVVFGILILFAERPILIIGTSFAGAFALFVGIDVFVKAGLVDALRRFLAS----------GSVEYVPAKGVYLELGGIVLVALVGIAVQWYMTRNKGHNHHRGKLAHGSRG 448          
The following BLAST results are available for this feature:
BLAST of EWM27352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109561|gb|EWM27352.1|0.000e+0100.00protein of unknown function DUF4203 [Nannochlorops... [more]
gi|553194128|ref|XP_005855892.1|0.000e+0100.00hypothetical protein NGA_0557100 [Nannochloropsis ... [more]
gi|511010909|gb|EPB92124.1|1.115e-727.57hypothetical protein HMPREF1544_00949 [Mucor circi... [more]
gi|1026994158|ref|XP_016607224.1|7.150e-725.76hypothetical protein SPPG_05439 [Spizellomyces pun... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3332rna3332Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications