EWM27381.1, cds3294 (CDS) Nannochloropsis gaditana

Overview
NameEWM27381.1
Unique Namecds3294
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:52842..53576 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27381.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100438g3.1496.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:52842..53576 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|585109606|gb|EWM27381.1| (hypothetical protein Naga_100438g3 [Nannochloropsis gaditana])

HSP 1 Score: 496.123 bits (1276), Expect = 2.031e-177
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MTISIRKTGHPTMKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG 244
            MTISIRKTGHPTMKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG
Sbjct:    1 MTISIRKTGHPTMKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG 244          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|553181668|ref|XP_005853604.1| (hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526] >gi|422295457|gb|EKU22756.1| hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 471.085 bits (1211), Expect = 9.562e-168
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:   13 MKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG 244
            MKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG
Sbjct:    1 MKSSPSRALSTVAYGLVFLVPVFITVIIGLVPLKNFPTNDVSVPPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESFWPKAG 232          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|954175914|ref|WP_058088024.1| (hypothetical protein [Aquabacterium parvum])

HSP 1 Score: 114.775 bits (286), Expect = 6.598e-28
Identity = 70/171 (40.94%), Postives = 98/171 (57.31%), Query Frame = 0
Query:   67 TEYALRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFT-PFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAV 235
            TE AL +  F  L  LF  LP P+   + GE+ A +L   +  A V+G +    P  PG W+ K+F +      G GYN F   G R  +R+ M T I  S +DGRP++ L YA    + G + M DEVR + PGLYLG+GT+G+++ +R+  PLPF+LRGP  AP  G +
Sbjct:   17 TESALLAMGFKDLMALFDKLPAPTIQEMDGEFAARLLAQPNAVAQVIGNLTVNNPLMPGRWLCKAF-KPVSAVGGQGYNSFAHLG-RTVQRYPMQTLIAPSRYDGRPAYTLVYAAFQSMCGAIHMVDEVRRVAPGLYLGIGTWGFTDGQRQ-VPLPFVLRGPI-APYAGHI 183          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|502616118|ref|WP_012853029.1| (hypothetical protein [Thermomonospora curvata] >gi|268311871|gb|ACY98245.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183])

HSP 1 Score: 114.39 bits (285), Expect = 7.044e-28
Identity = 73/168 (43.45%), Postives = 97/168 (57.74%), Query Frame = 0
Query:   78 SLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLR---GPYQAPVPGAVRESFWP 241
             L  LF +LP PS   ++GEY A +L   +  A+V G    +  F   W+ K F    D++ G GYN FR FG R+ RR+ MHT I  S +DGRP++ L Y     + G + M DEVR   PG+YLG+GT+G++E +RR  PLPFLL    GPY+  V G  R  F P
Sbjct:   17 ELLALFTTLPAPSIEEMNGEYAARLLAQPNAFASVTGHAAVSNPF-ARWLCKGF-RPVDDRTGRGYNTFRQFG-RVRRRYAMHTLIAPSRYDGRPAYTLVYRAYGSVCGAINMVDEVRRAAPGVYLGIGTWGFTERQRR-IPLPFLLTGPVGPYRGDV-GTARRGFTP 179          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|651268610|ref|WP_026401802.1| (hypothetical protein [Actinomadura rifamycini])

HSP 1 Score: 107.457 bits (267), Expect = 2.754e-25
Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = 0
Query:   82 LFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGP---YQAPVPGAVRESFWP 241
             F +LP PS   + GEY A +L   S+ A+V G  G        W+ K+F    D + G GYN FR FG R+ +R+ MHT I  S +DGRP++ L Y     + G + M DEVR   PG+YLG+GT+G++  +RR  PLPFLL GP   Y+  V GA R  F P
Sbjct:   21 FFATLPAPSIEEMDGEYTARLLAQPSVFASVTGR-GTVSNPLARWLCKAF-RPVDGQTGRGYNTFRQFG-RIRQRYAMHTLIAPSRYDGRPAYTLVYRAYASMCGAINMVDEVRRAAPGVYLGIGTWGFTARQRR-VPLPFLLTGPVGAYRGDV-GAARRGFTP 179          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|1110699919|ref|WP_071925805.1| (hypothetical protein [Nocardia soli] >gi|1108541135|gb|APE32784.1| hypothetical protein BOX37_01005 [Nocardia soli])

HSP 1 Score: 104.375 bits (259), Expect = 3.962e-24
Identity = 70/175 (40.00%), Postives = 94/175 (53.71%), Query Frame = 0
Query:   71 LRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGP---YQAPVPGAVRESFWP 241
            LR      L  LF  L  P+   + GEY A +L   +L A V G +       G W+ K+F    D   G GYN FR FG R+ +R+ M T I  S +DG P++ L Y   T + G + M DE+R   PG+YLGMGT+G+++A+RR  P PFLL GP   Y+  + G  R  F P
Sbjct:   10 LRRLDTSELLALFTDLEAPTIAEIDGEYTAALLAQPNLFAMVTGKVAVANPL-GPWLCKAF-RPVDANGGRGYNTFREFG-RVRQRYPMRTLIAPSRYDGAPAYTLVYRAYTSMCGSIHMVDELRRAAPGVYLGMGTWGFTDAQRR-VPRPFLLTGPVGEYRGDI-GTARPDFTP 179          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|760019997|ref|WP_043703152.1| (hypothetical protein [Nocardia abscessus])

HSP 1 Score: 103.99 bits (258), Expect = 7.256e-24
Identity = 70/175 (40.00%), Postives = 96/175 (54.86%), Query Frame = 0
Query:   71 LRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLR---GPYQAPVPGAVRESFWP 241
            LR      L  LF +L  P+   + GEY A +L   +L A V G +       G W+ K+F    DE  G GYN F  FG R+ +R+ M T +  S +DG P++ L Y   T + G + M DEVR   PG+YLGMGT+G+++A+RR  P PFLL    GPY+  + G  R +F P
Sbjct:   10 LRRLDTSGLLALFTTLEAPTIAEIDGEYTAALLAQPNLFAVVTGKVAVANPL-GPWLCKAF-RPVDENGGRGYNTFGEFG-RVRQRYPMRTLLAPSRYDGAPAYTLIYRAYTSMCGSIHMVDEVRRAAPGVYLGMGTWGFTDAQRR-VPRPFLLTGPVGPYRGDI-GIARPAFTP 179          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|1016332824|ref|WP_063002839.1| (hypothetical protein [Nocardia cummidelens])

HSP 1 Score: 102.449 bits (254), Expect = 2.934e-23
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 0
Query:   71 LRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGP---YQAPVPGAVRESFWP 241
            LR      L  LF +L  P+   + GEY A +L   +L A V G +       G W+ K+F    DE  G GYN F  FG ++ +R+ M T +  S +DG P++ L Y     L G + M DEVR   PG+YLGMGT+G+++A+RR  P PFLL GP   Y+  + G  R  F P
Sbjct:   15 LRRLDTSGLLALFTTLEAPTIAEIDGEYTAALLAQPNLFAVVTGKVAVANPL-GPWLCKAF-RPVDENGGRGYNTFAEFG-QVRQRYPMRTLLAPSRYDGAPAYTLIYRAYASLCGSINMVDEVRRAAPGVYLGMGTWGFTDAQRR-VPRPFLLTGPVGSYRGDI-GKARHDFAP 184          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|1016416266|ref|WP_063055754.1| (hypothetical protein [Nocardia soli])

HSP 1 Score: 102.449 bits (254), Expect = 3.127e-23
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 0
Query:   71 LRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGP---YQAPVPGAVRESFWP 241
            LR      L  LF +L  P+   + GEY A +L   +L A V G +       G W+ K+F    DE  G GYN F  FG ++ +R+ M T +  S +DG P++ L Y     L G + M DEVR   PG+YLGMGT+G+++A+RR  P PFLL GP   Y+  + G  R  F P
Sbjct:   15 LRRLDTSGLLALFTTLEAPTIAEIDGEYTAALLAQPNLFAVVTGKVAVANPL-GPWLCKAF-RPVDENGGRGYNTFAEFG-QVRQRYPMRTLLAPSRYDGAPAYTLIYRAYASLCGSINMVDEVRRAAPGVYLGMGTWGFTDAQRR-VPRPFLLSGPVGSYRGDI-GEARHDFTP 184          
BLAST of EWM27381.1 vs. NCBI_GenBank
Match: gi|1200114001|ref|WP_087551538.1| (hypothetical protein [Acinetobacter sp. WCHA52])

HSP 1 Score: 101.679 bits (252), Expect = 3.387e-23
Identity = 64/165 (38.79%), Postives = 86/165 (52.12%), Query Frame = 0
Query:   66 VTEYALRSASFPSLFYLFLSLPPPS-GPLHGEYLAEILDAGSLAANVLGWIGFTPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQA 229
            +T  +L   S   L +LF +L  PS   +HGEY A +L   S  A + G+I   P     W  KSF     E  G GYN F     R+ ++F M T I  S +D +P +QL Y     L   + M DEVR+I   LYLG+GT+G+SE K++    PF+L GP  A
Sbjct:    7 ITAVSLTKMSHQQLLHLFKTLDAPSINEMHGEYRATLLKQPSFIATLSGYIINNPIL--NWQTKSF-RPVSEDQGRGYNTF-LRKNRIIQKFPMQTVIAHSRYDAKPVYQLIYKSFHSLCADINMVDEVRKINEHLYLGIGTWGFSE-KQQHIAYPFMLEGPIHA 166          
The following BLAST results are available for this feature:
BLAST of EWM27381.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109606|gb|EWM27381.1|2.031e-177100.00hypothetical protein Naga_100438g3 [Nannochloropsi... [more]
gi|553181668|ref|XP_005853604.1|9.562e-168100.00hypothetical protein NGA_0429500 [Nannochloropsis ... [more]
gi|954175914|ref|WP_058088024.1|6.598e-2840.94hypothetical protein [Aquabacterium parvum][more]
gi|502616118|ref|WP_012853029.1|7.044e-2843.45hypothetical protein [Thermomonospora curvata] >gi... [more]
gi|651268610|ref|WP_026401802.1|2.754e-2543.29hypothetical protein [Actinomadura rifamycini][more]
gi|1110699919|ref|WP_071925805.1|3.962e-2440.00hypothetical protein [Nocardia soli] >gi|110854113... [more]
gi|760019997|ref|WP_043703152.1|7.256e-2440.00hypothetical protein [Nocardia abscessus][more]
gi|1016332824|ref|WP_063002839.1|2.934e-2339.43hypothetical protein [Nocardia cummidelens][more]
gi|1016416266|ref|WP_063055754.1|3.127e-2339.43hypothetical protein [Nocardia soli][more]
gi|1200114001|ref|WP_087551538.1|3.387e-2338.79hypothetical protein [Acinetobacter sp. WCHA52][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3303rna3303Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications