EWM27382.1, cds3288 (CDS) Nannochloropsis gaditana

Overview
NameEWM27382.1
Unique Namecds3288
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:31766..31825 -
Alignment locationCM002461.1:31585..31639 -
Alignment locationCM002461.1:31238..31455 -
Alignment locationCM002461.1:30780..31165 -

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Properties
Property NameValue
Start range30780
Start range.
Protein idEWM27382.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100328g4.172.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:31766..31825 -
CM002461.1supercontigCM002461.1:31585..31639 -
CM002461.1supercontigCM002461.1:31238..31455 -
CM002461.1supercontigCM002461.1:30780..31165 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27382.1 vs. NCBI_GenBank
Match: gi|585109609|gb|EWM27382.1| (hypothetical protein Naga_100328g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 449.899 bits (1156), Expect = 2.239e-159
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MRVLSLTLLASTLSLAAGHQTLRGLVSWAGEEIGGRGASKDAFAGLEDPMRQATDTVRAKNGMEPLTSDLSLSRTALYLATELGKKDQKEAEVSPELEKALLERAKAYGFAGTSVKAQVFTYDAKAMGLTAKDSEAHALAAVNYWTSKDATAGLEGEREEEMEDEDKDATAGLEEGEAEEEIEDEDEDEDEDEDEDEDEDEDEDEDEDDEDKDATAGLEEGEAEEEIEDEDEDEDEDEE 239
            MRVLSLTLLASTLSLAAGHQTLRGLVSWAGEEIGGRGASKDAFAGLEDPMRQATDTVRAKNGMEPLTSDLSLSRTALYLATELGKKDQKEAEVSPELEKALLERAKAYGFAGTSVKAQVFTYDAKAMGLTAKDSEAHALAAVNYWTSKDATAGLEGEREEEMEDEDKDATAGLEEGEAEEEIEDEDEDEDEDEDEDEDEDEDEDEDEDDEDKDATAGLEEGEAEEEIEDEDEDEDEDEE
Sbjct:    1 MRVLSLTLLASTLSLAAGHQTLRGLVSWAGEEIGGRGASKDAFAGLEDPMRQATDTVRAKNGMEPLTSDLSLSRTALYLATELGKKDQKEAEVSPELEKALLERAKAYGFAGTSVKAQVFTYDAKAMGLTAKDSEAHALAAVNYWTSKDATAGLEGEREEEMEDEDKDATAGLEEGEAEEEIEDEDEDEDEDEDEDEDEDEDEDEDEDDEDKDATAGLEEGEAEEEIEDEDEDEDEDEE 239          
BLAST of EWM27382.1 vs. NCBI_GenBank
Match: gi|585109618|gb|EWM27390.1| (hypothetical protein Naga_100185g3 [Nannochloropsis gaditana])

HSP 1 Score: 199.134 bits (505), Expect = 9.908e-60
Identity = 121/223 (54.26%), Postives = 142/223 (63.68%), Query Frame = 0
Query:    1 MRVLSLTLLASTLSLAAGHQTLRGLVSWAGEEIGGRGASKDAFAGLEDPMRQATDTVRAKNGMEPLTSDLSLSRTALYLATELGKKDQKEAEVSPELEKALLERAKAYGFAGTSVKAQVFTYDAKAMGLTAKDSEAHALAAVNYWT-SKDATAGLEGEREEEMEDEDKDATAGLEEGEAEEEIEDEDEDEDEDEDEDEDEDEDEDEDEDDEDKDATAGLEEGE 222
            M++ S  L   T S AA  QTLRGL +WAGEEIG   AS+DAF  LEDPMR A +TVRA++G+EPL SDLSLSRTAL LA ELG +D KEA +SPE+E  LLERA+A GF GTSVKA +FT DAKA  LTA D+EAHALAAV  W   K+ATAGL      ++ + +  ATAGL+                   D  ED  +  DE    E K A AGLE GE
Sbjct:    1 MKIFSFALAGITCS-AAVAQTLRGLAAWAGEEIGVNTASRDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGL------DVNEHEHAATAGLK------------------VDGHEDVSDHSDEGGVKEVKGAAAGLEVGE 198          
BLAST of EWM27382.1 vs. NCBI_GenBank
Match: gi|585109619|gb|EWM27391.1| (hypothetical protein Naga_100185g3 [Nannochloropsis gaditana])

HSP 1 Score: 194.897 bits (494), Expect = 5.428e-58
Identity = 121/224 (54.02%), Postives = 142/224 (63.39%), Query Frame = 0
Query:    1 MRVLSLTLLASTLSLAAGHQTLRGLVSWAGEEIGGRGAS-KDAFAGLEDPMRQATDTVRAKNGMEPLTSDLSLSRTALYLATELGKKDQKEAEVSPELEKALLERAKAYGFAGTSVKAQVFTYDAKAMGLTAKDSEAHALAAVNYWT-SKDATAGLEGEREEEMEDEDKDATAGLEEGEAEEEIEDEDEDEDEDEDEDEDEDEDEDEDEDDEDKDATAGLEEGE 222
            M++ S  L   T S AA  QTLRGL +WAGEEIG   AS +DAF  LEDPMR A +TVRA++G+EPL SDLSLSRTAL LA ELG +D KEA +SPE+E  LLERA+A GF GTSVKA +FT DAKA  LTA D+EAHALAAV  W   K+ATAGL      ++ + +  ATAGL+                   D  ED  +  DE    E K A AGLE GE
Sbjct:    1 MKIFSFALAGITCS-AAVAQTLRGLAAWAGEEIGVNTASARDAFTSLEDPMRVAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKLLERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNATAGL------DVNEHEHAATAGLK------------------VDGHEDVSDHSDEGGVKEVKGAAAGLEVGE 199          
The following BLAST results are available for this feature:
BLAST of EWM27382.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585109609|gb|EWM27382.1|2.239e-159100.00hypothetical protein Naga_100328g4, partial [Nanno... [more]
gi|585109618|gb|EWM27390.1|9.908e-6054.26hypothetical protein Naga_100185g3 [Nannochloropsi... [more]
gi|585109619|gb|EWM27391.1|5.428e-5854.02hypothetical protein Naga_100185g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3297rna3297Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications