EWM27402.1, cds3271 (CDS) Nannochloropsis gaditana

Overview
NameEWM27402.1
Unique Namecds3271
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1221964..1222109 -
Alignment locationCM002460.1:1220699..1221864 -
Alignment locationCM002460.1:1220236..1220600 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27402.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100212g6.2169.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1221964..1222109 -
CM002460.1supercontigCM002460.1:1220699..1221864 -
CM002460.1supercontigCM002460.1:1220236..1220600 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|585109633|gb|EWM27402.1| (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 1131.7 bits (2926), Expect = 0.000e+0
Identity = 558/558 (100.00%), Postives = 558/558 (100.00%), Query Frame = 0
Query:    1 MSAPMLEGRERWIPSGPHPAVFRPNAKQAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGCGSRLRERPDSLPLAYATDPSVPDAAHRSVRAPAVPSLSSRAASASTSATASSSFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTSPFPLLDALALTSNSLKHHLVPSHARQETARTCEVAEEDVARGATHRGVRYKSNQRCDWKDHERLEGNENRPRKSAKVGRGDNAGTRAWEEYPPPFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRSMDVVQGSYE 558
            MSAPMLEGRERWIPSGPHPAVFRPNAKQAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGCGSRLRERPDSLPLAYATDPSVPDAAHRSVRAPAVPSLSSRAASASTSATASSSFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTSPFPLLDALALTSNSLKHHLVPSHARQETARTCEVAEEDVARGATHRGVRYKSNQRCDWKDHERLEGNENRPRKSAKVGRGDNAGTRAWEEYPPPFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRSMDVVQGSYE
Sbjct:    1 MSAPMLEGRERWIPSGPHPAVFRPNAKQAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGCGSRLRERPDSLPLAYATDPSVPDAAHRSVRAPAVPSLSSRAASASTSATASSSFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTSPFPLLDALALTSNSLKHHLVPSHARQETARTCEVAEEDVARGATHRGVRYKSNQRCDWKDHERLEGNENRPRKSAKVGRGDNAGTRAWEEYPPPFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRSMDVVQGSYE 558          
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|553186625|ref|XP_005854455.1| (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >gi|553187875|ref|XP_005854696.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294361|gb|EKU21661.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294601|gb|EKU21901.1| hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1103.58 bits (2853), Expect = 0.000e+0
Identity = 547/558 (98.03%), Postives = 550/558 (98.57%), Query Frame = 0
Query:    1 MSAPMLEGRERWIPSGPHPAVFRPNAKQAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGCGSRLRERPDSLPLAYATDPSVPDAAHRSVRAPAVPSLSSRAASASTSATASSSFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTSPFPLLDALALTSNSLKHHLVPSHARQETARTCEVAEEDVARGATHRGVRYKSNQRCDWKDHERLEGNENRPRKSAKVGRGDNAGTRAWEEYPPPFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRSMDVVQGSYE 558
            MSAPMLEGRERWIPSGPHPAVFRPNA QAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGC SRLRERPDSLPLAYATDPSVP+AAHRSVRAPAVPSLSSRAASASTSATAS SFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTS FPLLDA ALTSNSLKHHLVPSHARQETART EVAEEDVARGATHRGVRYKSNQRCDW+DHERLEGNENRPRKSAKVGRGDNAGTRAWEEY  PFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRS+DVVQGSYE
Sbjct:    1 MSAPMLEGRERWIPSGPHPAVFRPNATQAKDVSALSLLSTVAGLSPPAQPELEHCKESATGTSGGCRSRLRERPDSLPLAYATDPSVPEAAHRSVRAPAVPSLSSRAASASTSATASFSFSSAHAPPPGAASSSPSLSRPAGFPCLRRIKPDHILPVHPHMLPRRPRDQTSSFPLLDARALTSNSLKHHLVPSHARQETARTWEVAEEDVARGATHRGVRYKSNQRCDWEDHERLEGNENRPRKSAKVGRGDNAGTRAWEEYSSPFRRVSRAVDSTRLEEPAFPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRSVDVVQGSYE 558          
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|585103505|gb|EWM22860.1| (hypothetical protein Naga_100988g2 [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 2.867e-10
Identity = 79/273 (28.94%), Postives = 112/273 (41.03%), Query Frame = 0
Query:  289 LPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ--------------AFAPKRRKAKSGGVGER---GPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHT---PSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQ 541
            LP+  ST  + ++   G    + RL A+   D +K  +  A +   S   G+ D   G+   L  +L + P               +       +    V  R   GPP   A   S   D +   L  +LA D  AC +V   N   +  V CN RMS LF+S+EE+ GL  QT  A  +FW  FL  P   E + A SA +V         S D I+    +   KG       + +AT+G   +       LILRL+P G  DL   RR+
Sbjct:  249 LPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGI-DAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQAL-MSTQSDTACLPLFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLD-PVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKG-------RAMATLGWHSSE-DVVQTLILRLIPLGFHDLPGSRRR 509          
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|553178413|ref|XP_005852550.1| (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >gi|422295983|gb|EKU23282.1| hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.707 bits (169), Expect = 8.866e-9
Identity = 76/264 (28.79%), Postives = 107/264 (40.53%), Query Frame = 0
Query:  305 GVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ--------------AFAPKRRKAKSGGVGER---GPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHT---PSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGR 548
            G    + RL A+   D +K  +  A +   S   G+ D   G+   L  +L + P               +       +    V  R   GPP   A   S   D +   L  +LA D  AC +V   N   +  V CN RMS LF+S+EE+ GL  QT  A  +FW  FL  P   E + A SA +V         S+D I+    +    G       + +AT+G   +       LILRL+P G  D+    R+E R  GR
Sbjct:  287 GFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGI-DAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQAL-MSTQSDTACLPLFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLD-PVDVEALLAGSADLVLDKFNQGRSSIDRIVGVTTRDGRWG-------RAMATLGWHSSE-DVVQTLILRLIPLGFHDVPVGVREEGREGGR 538          
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|585107593|gb|EWM25731.1| (hypothetical protein Naga_100087g15 [Nannochloropsis gaditana])

HSP 1 Score: 64.6994 bits (156), Expect = 2.612e-7
Identity = 57/196 (29.08%), Postives = 92/196 (46.94%), Query Frame = 0
Query:  310 IARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQA-------------FAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQ 492
            I ++A+ G+LD  K+ +   ++   +QA G  D + G+L L+ HLL                           + GG G R  P     G+SA   P +         D+ ACY++ S   TG ESV+C++ M +LFIS++EL     +T +   S W  F +  GL  L  A +A+++Q   T  ++V +EC  +
Sbjct:   52 IQKMASMGLLDRRKMVDYVRIVSLFNQATG-KDTSHGLLDLVYHLLTCMSAGEDGGSSLSQIELLHTIGGGIGEIGGKGVRAVP-----GSSAATPPEL---------DDLACYII-SRGGTGAESVFCSEAMKQLFISTDELTCTLKETGLTSVSVWASFTTPEGLATLHRAAAAVLLQR-DTSQVEVQVECVTR 230          
BLAST of EWM27402.1 vs. NCBI_GenBank
Match: gi|585100580|gb|EWM20727.1| (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 60.4622 bits (145), Expect = 3.159e-7
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0
Query:  398 LIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILE 488
            L  +L  DE ACY+V+         V CN RM+ LF+ + E++GL  QT +   +FW RF+    L  L  A   +M+       +DV+L+
Sbjct:   27 LAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLGYGSKTQIDVVLK 117          
The following BLAST results are available for this feature:
BLAST of EWM27402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585109633|gb|EWM27402.1|0.000e+0100.00hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
gi|553186625|ref|XP_005854455.1|0.000e+098.03hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
gi|585103505|gb|EWM22860.1|2.867e-1028.94hypothetical protein Naga_100988g2 [Nannochloropsi... [more]
gi|553178413|ref|XP_005852550.1|8.866e-928.79hypothetical protein NGA_0687300 [Nannochloropsis ... [more]
gi|585107593|gb|EWM25731.1|2.612e-729.08hypothetical protein Naga_100087g15 [Nannochlorops... [more]
gi|585100580|gb|EWM20727.1|3.159e-734.07hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3280rna3280Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications