EWM27436.1, cds3237 (CDS) Nannochloropsis gaditana

Overview
NameEWM27436.1
Unique Namecds3237
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1112281..1112385 +
Alignment locationCM002460.1:1112507..1112650 +
Alignment locationCM002460.1:1112832..1112981 +
Alignment locationCM002460.1:1113135..1113194 +
Alignment locationCM002460.1:1113269..1113334 +
Alignment locationCM002460.1:1113579..1113914 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27436.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100482g3.2386.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1112281..1112385 +
CM002460.1supercontigCM002460.1:1112507..1112650 +
CM002460.1supercontigCM002460.1:1112832..1112981 +
CM002460.1supercontigCM002460.1:1113135..1113194 +
CM002460.1supercontigCM002460.1:1113269..1113334 +
CM002460.1supercontigCM002460.1:1113579..1113914 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|585109684|gb|EWM27436.1| (hypothetical protein Naga_100482g3 [Nannochloropsis gaditana])

HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGEGEEGLAVAVQESLYLEGEGEDDDLDDLEDEEEEEEEAEGEGGGAAGEGEKTG 286
            MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGEGEEGLAVAVQESLYLEGEGEDDDLDDLEDEEEEEEEAEGEGGGAAGEGEKTG
Sbjct:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGEGEEGLAVAVQESLYLEGEGEDDDLDDLEDEEEEEEEAEGEGGGAAGEGEKTG 286          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|553178536|ref|XP_005852567.1| (hypothetical protein NGA_0702800 [Nannochloropsis gaditana CCMP526] >gi|422295964|gb|EKU23263.1| hypothetical protein NGA_0702800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 464.151 bits (1193), Expect = 4.450e-164
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0
Query:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGEGEEGLAVA 242
            MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGE EEGLAVA
Sbjct:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDGEVEEGLAVA 242          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|299473638|emb|CBN78032.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.109 bits (331), Expect = 2.576e-33
Identity = 99/236 (41.95%), Postives = 139/236 (58.90%), Query Frame = 0
Query:    1 MPPKAKANKKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAK--AKKEAKEKEDVELKLLFMQ-MQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGEEQVDVKKLRSLMEEEEDRDG 233
            MPPK +  KKA   + ++LIEDKTFGLKNKNKSK VQ+Y+   T Q   N   +  A  AA +K  A KEAK+ ++ EL  LF + +  G  K   A +    A       A++ K  Q    ++ I+   K LE++IE +R KL    K  TPV +E+ A+WK ++  K+  E   KV+AE+ KK KGKGLSVLSG+AL++YDA LF DD +A    VD   ++   +E++D +G
Sbjct:    1 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYIS--TVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPA------VAVETKAKQVQETFV-IEEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADA----VDNDTMKQRNDEDDDEEG 223          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|72392905|ref|XP_847253.1| (hypothetical protein [Trypanosoma brucei brucei TREU927] >gi|788011232|ref|XP_011775731.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] >gi|62176087|gb|AAX70206.1| hypothetical protein, conserved [Trypanosoma brucei] >gi|70803283|gb|AAZ13187.1| hypothetical protein, conserved [Trypanosoma brucei brucei TREU927] >gi|261330470|emb|CBH13454.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972])

HSP 1 Score: 89.7373 bits (221), Expect = 8.810e-18
Identity = 79/220 (35.91%), Postives = 120/220 (54.55%), Query Frame = 0
Query:    9 KKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKR-EAAMKAKG-------GQGAAQWI-------EIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KKA+ K+ EK++EDKTFGLKNKN+S KVQ Y+Q+++     N G   + ++    +AK++A+E    E K   M+M     +  K +    +  K+K+ E+A  A+G       G    +++       E+    + LEE +E ER+ L   + ++TPVTEESF  WK  K    ++E AE   A + K   G+G   L G  L++ D  LFVDDE+A E
Sbjct:    3 KKAEQKKREKIVEDKTFGLKNKNRSSKVQSYIQSISKSV--NQGNPNDRKRNEDLEAKRKARE----EKKAFEMEM----ARLFKDVSTVNKQDKSKQEESANNAEGEEVDKNLGCAPDEYLFRPEDFDEVQYDERRLEEQLEAEREALK-GRSDLTPVTEESFQAWKAAK----RQEAAEADAARVRKAKAGEG--KLRGWDLWQMDKELFVDDEDADE 205          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|1115873907|emb|SCU68032.1| (hypothetical protein, conserved [Trypanosoma equiperdum])

HSP 1 Score: 89.3521 bits (220), Expect = 1.028e-17
Identity = 79/220 (35.91%), Postives = 120/220 (54.55%), Query Frame = 0
Query:    9 KKADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAVTTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKR-EAAMKAKG-------GQGAAQWI-------EIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KKA+ K+ EK++EDKTFGLKNKN+S KVQ Y+Q+++     N G   + ++    +AK++A+E    E K   M+M     +  K +    +  K+K+ E+A  A+G       G    +++       E+    + LEE +E ER+ L   + ++TPVTEESF  WK  K    ++E AE   A + K   G+G   L G  L++ D  LFVDDE+A E
Sbjct:    3 KKAEQKKREKIVEDKTFGLKNKNRSSKVQSYIQSISKSV--NQGNPNDRKRNEDLEAKRKARE----EKKAFEMEM----ARLFKDVSTVNKQDKSKQEESANNAEGEEVDKNLGCAPDEYLFRPEDFDEVQYDERRLEEQLEAEREALK-GRSDLTPVTEESFQAWKAAK----RQEAAEADAARVRKAKAGEG--KLRGWDLWQMDKELFVDDEDADE 205          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|290994833|ref|XP_002680036.1| (predicted protein [Naegleria gruberi] >gi|284093655|gb|EFC47292.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 90.5077 bits (223), Expect = 1.896e-17
Identity = 78/195 (40.00%), Postives = 110/195 (56.41%), Query Frame = 0
Query:   22 DKTFGLKNKNKSKKVQQYVQAV--TTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTK-GKGLSVLSGKALFEYDAALFVDDEEAGE 213
            ++TFGLKNKNKSK VQ YV++V  T    H+  VK E  +    + +K A++K + ELK LF  +     K  KA EA+ E  +   E    +   + A      D     +EE++E ER K+     + TPVT ESF +WK+ K E++K+E   K K ++A   K G+G   LSG+ LF+ + ALFVDDEEA E
Sbjct:   12 EQTFGLKNKNKSKTVQTYVKSVSNTVNQVHDKKVKQEMAEKEKKRLEKLAQKKREQELKDLFKTI--DGKKDEKAEEASTEEGQEGEEVTFDSLEQEMA------DEAELSIEEIVEKERAKIM----DGTPVTYESFTKWKQFKVEQQKKEEERKRKLQMALYEKSGQG---LSGRELFKMNEALFVDDEEADE 191          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|146079238|ref|XP_001463732.1| (conserved hypothetical protein [Leishmania infantum JPCM5] >gi|398011449|ref|XP_003858920.1| hypothetical protein, conserved [Leishmania donovani] >gi|134067819|emb|CAM66099.1| conserved hypothetical protein [Leishmania infantum JPCM5] >gi|322497131|emb|CBZ32202.1| hypothetical protein, conserved [Leishmania donovani])

HSP 1 Score: 87.8113 bits (216), Expect = 4.512e-17
Identity = 81/206 (39.32%), Postives = 114/206 (55.34%), Query Frame = 0
Query:   10 KADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAV--TTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KA+ K+ EK++EDKTFGLKNKN+S KVQ YVQ V  +   ++    K++AE AA   AK+E + +E  EL  LF  +     K   A EAA  A+   +      +       + E++   + LEE +E ER+KL   + ++TPVTE SF  WK+ K E+   + A +V+   AK   GK    L G  L++ D  LFVDDE A E
Sbjct:    3 KAEQKKKEKIVEDKTFGLKNKNRSAKVQAYVQQVKQSVDQRNPQDRKSQAELAARRAAKEEKRARE-AELAKLFNDVDQQQRKKRDA-EAAETAEGDDQYMCHPEEYLFRPEDFDEVEQDDERLEEKLEAEREKLK-DRTDLTPVTEASFQAWKQRKREEAAEKEAARVRR--AKSGDGK----LRGWDLWQMDQELFVDDENADE 199          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|401416846|ref|XP_003872917.1| (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >gi|322489143|emb|CBZ24395.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 87.0409 bits (214), Expect = 8.603e-17
Identity = 80/206 (38.83%), Postives = 113/206 (54.85%), Query Frame = 0
Query:   10 KADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAV--TTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KA+ K+ EK++EDKTFGLKNKN+S KVQ YVQ V  +   ++    K++AE  A   AK+E + +E  EL  LF  +     K   A EAA  A+   +      +       + E++   + LEE +E ER+KL   + ++TPVTE SF  WK+ K E+   + A +V+   AK   GK    L G  L++ D  LFVDDE A E
Sbjct:    3 KAEQKKKEKIVEDKTFGLKNKNRSAKVQAYVQQVKQSVDQRNPQDRKSQAELTARRTAKEEKRARE-AELAKLFNDVDQQQRKKRDA-EAAETAEGDDQYMCHPEEYLFRPEDFDEVEQDDQRLEEKLEAEREKLK-DRTDLTPVTEASFQAWKQRKREEAAEKEAARVRR--AKSGDGK----LRGWDLWQMDQELFVDDENADE 199          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|157865411|ref|XP_001681413.1| (conserved hypothetical protein [Leishmania major strain Friedlin] >gi|68124709|emb|CAJ02793.1| conserved hypothetical protein [Leishmania major strain Friedlin])

HSP 1 Score: 86.2705 bits (212), Expect = 1.495e-16
Identity = 80/206 (38.83%), Postives = 113/206 (54.85%), Query Frame = 0
Query:   10 KADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAV--TTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWIEIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KA+ K+ EK++EDKTFGLKNKN+S KVQ YVQ V  +   ++    K++AE  A   AK+E + +E  EL  LF  +     K   A EAA  A+   +      +       + E++   + LEE +E ER+KL   + ++TPVTE SF  WK+ K E+   + A +V+   AK   GK    L G  L++ D  LFVDDE A E
Sbjct:    3 KAEQKKKEKIVEDKTFGLKNKNRSTKVQAYVQQVKQSVDQRNPQDRKSQAELLARRAAKEEKRARE-AELAKLFNDVDQQQRKKRDA-EAAETAEGDDQYMCHPEEYLFRPEDFDEVEQDDERLEEKLEAEREKLK-DRTDLTPVTEASFQAWKQRKREEAAEKEAARVRR--AKSGDGK----LRGWDLWQMDQELFVDDENADE 199          
BLAST of EWM27436.1 vs. NCBI_GenBank
Match: gi|154333193|ref|XP_001562857.1| (conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|731689841|ref|XP_010696795.1| hypothetical protein LPMP_100720 [Leishmania panamensis] >gi|134059862|emb|CAM37290.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|685201891|gb|AIN96142.1| hypothetical protein LPMP_100720 [Leishmania panamensis] >gi|1099056580|emb|CCM13519.1| hypothetical protein, conserved [Leishmania guyanensis])

HSP 1 Score: 84.7297 bits (208), Expect = 4.992e-16
Identity = 79/220 (35.91%), Postives = 114/220 (51.82%), Query Frame = 0
Query:   10 KADTKRAEKLIEDKTFGLKNKNKSKKVQQYVQAV--TTQTKHNIGVKTEAEKAAAAKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAQKAKREAAMKAKGGQGAAQWI--------------EIDMTGKPLEEVIEYERQKLAFFKKNVTPVTEESFARWKKEKAEKRKRENAEKVKAEIAKKTKGKGLSVLSGKALFEYDAALFVDDEEAGE 213
            KA+ K+ EK++EDKTFGLKNKN+S KVQ YVQ V  +   ++    K+++E AA   AK+E + +E  EL  LF  +               + Q+ K+    K +   G  Q++              E++   + LEE +E ER+KL   + ++TPVTE SF  WK+ K E+     A +V+   AK   GK    L G  L++ D  LFVDDE A E
Sbjct:    3 KAEQKKKEKIVEDKTFGLKNKNRSAKVQAYVQQVRQSVDQRNPQERKSQSELAARRSAKEEKRARE-AELAKLFNDV---------------DQQQRKKLDGAKVEAADGDDQYMCNPEEYLFRPEDFDEVEKDDERLEEKLEAEREKLK-DRTDLTPVTEVSFQAWKQRKREEAAEMEAARVRR--AKSGDGK----LRGWDLWQMDQELFVDDENADE 199          
The following BLAST results are available for this feature:
BLAST of EWM27436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109684|gb|EWM27436.1|0.000e+0100.00hypothetical protein Naga_100482g3 [Nannochloropsi... [more]
gi|553178536|ref|XP_005852567.1|4.450e-16499.59hypothetical protein NGA_0702800 [Nannochloropsis ... [more]
gi|299473638|emb|CBN78032.1|2.576e-3341.95conserved unknown protein [Ectocarpus siliculosus][more]
gi|72392905|ref|XP_847253.1|8.810e-1835.91hypothetical protein [Trypanosoma brucei brucei TR... [more]
gi|1115873907|emb|SCU68032.1|1.028e-1735.91hypothetical protein, conserved [Trypanosoma equip... [more]
gi|290994833|ref|XP_002680036.1|1.896e-1740.00predicted protein [Naegleria gruberi] >gi|28409365... [more]
gi|146079238|ref|XP_001463732.1|4.512e-1739.32conserved hypothetical protein [Leishmania infantu... [more]
gi|401416846|ref|XP_003872917.1|8.603e-1738.83conserved hypothetical protein [Leishmania mexican... [more]
gi|157865411|ref|XP_001681413.1|1.495e-1638.83conserved hypothetical protein [Leishmania major s... [more]
gi|154333193|ref|XP_001562857.1|4.992e-1635.91conserved hypothetical protein [Leishmania brazili... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3246rna3246Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications