EWM27442.1, cds3232 (CDS) Nannochloropsis gaditana

Overview
NameEWM27442.1
Unique Namecds3232
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1096787..1097523 +
Alignment locationCM002460.1:1097762..1097795 +

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Properties
Property NameValue
Protein idEWM27442.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100579g1.6100.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1096787..1097523 +
CM002460.1supercontigCM002460.1:1097762..1097795 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Homology
[Close]
BLAST of EWM27442.1 vs. NCBI_GenBank
Match: gi|585109694|gb|EWM27442.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 515.383 bits (1326), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 
Query:    1 MHVLQVVRIVCGGCCRRSSPSYERGEGSTKFWSPLYEAASVSELSGHYTNKPFIFIKAVTGVSRPQQDTLEVMGAYASTRLLTPDEAAGLLGPELSQRVEEGFSRLSVNGNDGGRGDGIDQRTFHRHVLEAFPAMPVVVVRTLFDAIDATAGGRREGGRGQGLVAMDDFMCMAAVLLKGSAEQRMRLAFRVYEVMGLRRLEGGGGRVGGRGGGGDFLFRGQVSSALSGNQGNPMGLGGGGRAAEGRRLPQAWWPWS 256
            MHVLQVVRIVCGGCCRRSSPSYERGEGSTKFWSPLYEAASVSELSGHYTNKPFIFIKAVTGVSRPQQDTLEVMGAYASTRLLTPDEAAGLLGPELSQRVEEGFSRLSVNGNDGGRGDGIDQRTFHRHVLEAFPAMPVVVVRTLFDAIDATAGGRREGGRGQGLVAMDDFMCMAAVLLKGSAEQRMRLAFRVYEVMGLRRLEGGGGRVGGRGGGGDFLFRGQVSSALSGNQGNPMGLGGGGRAAEGRRLPQAWWPWS
Sbjct:    1 MHVLQVVRIVCGGCCRRSSPSYERGEGSTKFWSPLYEAASVSELSGHYTNKPFIFIKAVTGVSRPQQDTLEVMGAYASTRLLTPDEAAGLLGPELSQRVEEGFSRLSVNGNDGGRGDGIDQRTFHRHVLEAFPAMPVVVVRTLFDAIDATAGGRREGGRGQGLVAMDDFMCMAAVLLKGSAEQRMRLAFRVYEVMGLRRLEGGGGRVGGRGGGGDFLFRGQVSSALSGNQGNPMGLGGGGRAAEGRRLPQAWWPWS 256
[Close]
BLAST of EWM27442.1 vs. NCBI_GenBank
Match: gi|299473323|emb|CBN77722.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.4622 bits (145), Expect = 8.196e-7
Identity = 39/145 (26.90%), Postives = 69/145 (47.59%), Query Frame = 0 
Query:   73 MGAYASTRLLTPDEAAGLLGPELSQRVEEGFSRLSVNGNDGGRGDGIDQRTFHRHVLEAFPAM-----------------------PVVVVRTLFDAIDATAGGRREGGRGQGLVAMDDFMCMAAVLLKGSAEQRMRLAFRVYEV 194
            MG   S  ++   EA   LG  L   +++ + R++ +G   G    +D + F R+ LEAFP M                       P ++V +LFDA          G   +G V++++F+C  AV+ +G+A +++R+ F VY++
Sbjct:    1 MGLAGSKTIIPIKEADAKLGASLRIEMDKAYHRITESGI--GEARLLDVKAFQRNFLEAFPMMNGDPEAADKDQHLKTREENLQHLPKILVESLFDAF---------GAARRGAVSLEEFVCAVAVMHRGTAPEQLRMLFEVYDI 134
The following BLAST results are available for this feature:
BLAST of EWM27442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109694|gb|EWM27442.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|299473323|emb|CBN77722.1|8.196e-726.90conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3241rna3241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications