EWM27484.1, cds3201 (CDS) Nannochloropsis gaditana

Overview
NameEWM27484.1
Unique Namecds3201
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1002590..1003444 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27484.1
ProductTHO complex, subunit THOC1
Orig transcript idgnl|cribi|Naga_100174g13.7299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1002590..1003444 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021861THO_THOC1
Homology
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|585109745|gb|EWM27484.1| (THO complex, subunit THOC1 [Nannochloropsis gaditana])

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT 284
            MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT
Sbjct:    1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT 284          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|553186547|ref|XP_005854439.1| (tho complex subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422294622|gb|EKU21922.1| tho complex subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 309.686 bits (792), Expect = 2.364e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA 153
            MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA
Sbjct:    8 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA 160          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|676395791|ref|XP_009041173.1| (hypothetical protein AURANDRAFT_72585 [Aureococcus anophagefferens] >gi|323448287|gb|EGB04188.1| hypothetical protein AURANDRAFT_72585 [Aureococcus anophagefferens])

HSP 1 Score: 108.612 bits (270), Expect = 5.110e-23
Identity = 86/252 (34.13%), Postives = 122/252 (48.41%), Query Frame = 0
Query:    5 LGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVA-SPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPR----------PVNLAEVEAEVGEAVGR------TFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDAL 239
            +G KYLTNSRL R+QL DP++R Q++TQL +V +Y    TA+    SP A     P+ + P      ++   R+LI  T   G   L  L+ V+ RE  W +WKRL  C P  E+P    ++  +  E  ++AL             Q   Y  P+PV             ++  E E  + +   R      + E ++    E AEDPE  I+EEYHP+H+ V+CWRA+RL  A        M  A LDAL
Sbjct:  111 MGAKYLTNSRLLRIQLRDPVLRMQLVTQLYLVFDYLRRETAIGNKPSPGAEFLSKPDWALP------VLLRVRKLIIATPPNGPERLKSLEEVIEREVNWSTWKRLG-CAP-YERPSQ--SKEQQYAEKRKRAL-------------QSERYSPPVPVILFKRTKLKAGAKLDARENEGTMKDCCARLADAVPSIEAFLEA-YEIAEDPENSIEEEYHPKHDKVYCWRALRLVVANHLTWFAEMHKADLDAL 338          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|695395656|ref|XP_009521220.1| (hypothetical protein PHYSODRAFT_540491 [Phytophthora sojae] >gi|348686117|gb|EGZ25932.1| hypothetical protein PHYSODRAFT_540491 [Phytophthora sojae])

HSP 1 Score: 105.145 bits (261), Expect = 7.547e-22
Identity = 95/313 (30.35%), Postives = 134/313 (42.81%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRC------------EPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR---------LGWA-----ADARVLVGMENA-----SLDALCRKMKGEDGEEDGGGEGKGKEEGRR--------KRKRKEN-GEA 274
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       LA A PPA S+       PK    DL +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C            E    KP    AR   T   + Q L+ + KPS ++ + +       +P+                      +    R +EA DPE  I+EEY P  + + CWR MR         L WA     A  + ++GME       + DA     +      D     K +E GR         KRKR ++ GEA
Sbjct:  292 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLARAKPPAGSTT------PKAKFADLTERVVALLKQTPSDGEGFSEMVSYVLERERNWVKWKQ-EKCREYEKYPSAADKEGSAPKPVVKRARRQLTSPLLEQILSESSKPSQILEKIKGKERASEVPL----------------------SAYTERFKEAWDPENGIEEEYWPDKDEMVCWRTMRAAMKGSVDHLDWAVKGTGALVKAVLGMETTDANKDTTDAAASTPRQSSSSGDAEVVKKEQESGREATKDSSGIKRKRSDSRGEA 569          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|953502367|emb|CEG36553.1| (Nuclear matrix protein [Plasmopara halstedii])

HSP 1 Score: 102.834 bits (255), Expect = 6.135e-21
Identity = 80/253 (31.62%), Postives = 115/253 (45.45%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKP---------SGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKG 245
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+       + +A   PPA S      + PK    DL      L++ T + G  Y  ++  VL RE+ W+ WK L++C P  E+ PA          A+    + A  P         + ++ +Q  +   +P  +   +   E   EV   V          R +EA DPE  I+EEY P    +FCWR MR     + + L  +     DAL + + G
Sbjct:  328 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILF------SDMARIKPPADS------TTPKAKFADLTDRVVALLKQTPSDGEGYSEMVSYVLERERNWVKWK-LEKC-PGYERYPA----------AMENDTSAALTPDVKRPRRQLTSLLLEQILSESSKPSKILEKIKGKERATEVSLKV-------YTDRFKEAWDPENGIEEEYWPDKNEMFCWRTMRAAMKTNVKHL-DLAVKGTDALVKGILG 548          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|970642063|gb|KUF83869.1| (THO complex subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 101.679 bits (252), Expect = 9.059e-21
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       L  A PPA S      + PK    +L +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C P  EK P+   +   T     V++A      P   + +Q  +   +P  +   +   E   EV      +   Y   R +EA DPE  I+EEY P  + + CWR MR
Sbjct:  176 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 370          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|970628274|gb|KUF75938.1| (THO complex subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 101.293 bits (251), Expect = 1.582e-20
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       L  A PPA S      + PK    +L +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C P  EK P+   +   T     V++A      P   + +Q  +   +P  +   +   E   EV      +   Y   R +EA DPE  I+EEY P  + + CWR MR
Sbjct:  266 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 460          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|566012783|gb|ETI35694.1| (hypothetical protein F443_18010 [Phytophthora parasitica P1569])

HSP 1 Score: 100.908 bits (250), Expect = 2.380e-20
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       L  A PPA S      + PK    +L +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C P  EK P+   +   T     V++A      P   + +Q  +   +P  +   +   E   EV      +   Y   R +EA DPE  I+EEY P  + + CWR MR
Sbjct:  330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|570316552|gb|ETO64500.1| (hypothetical protein F444_18035 [Phytophthora parasitica P1976])

HSP 1 Score: 100.908 bits (250), Expect = 2.403e-20
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       L  A PPA S      + PK    +L +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C P  EK P+   +   T     V++A      P   + +Q  +   +P  +   +   E   EV      +   Y   R +EA DPE  I+EEY P  + + CWR MR
Sbjct:  330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524          
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|675175301|ref|XP_008896535.1| (hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310] >gi|568104279|gb|ETN18936.1| hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310])

HSP 1 Score: 100.908 bits (250), Expect = 2.403e-20
Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query:    2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
            E F   KYLTNSRLFRLQL DP++R  +LTQ LI+ N       L  A PPA S      + PK    +L +    L++ T + G  +  ++  VL RE+ W+ WK+ ++C P  EK P+   +   T     V++A      P   + +Q  +   +P  +   +   E   EV      +   Y   R +EA DPE  I+EEY P  + + CWR MR
Sbjct:  330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524          
The following BLAST results are available for this feature:
BLAST of EWM27484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109745|gb|EWM27484.1|0.000e+0100.00THO complex, subunit THOC1 [Nannochloropsis gadita... [more]
gi|553186547|ref|XP_005854439.1|2.364e-104100.00tho complex subunit, partial [Nannochloropsis gadi... [more]
gi|676395791|ref|XP_009041173.1|5.110e-2334.13hypothetical protein AURANDRAFT_72585 [Aureococcus... [more]
gi|695395656|ref|XP_009521220.1|7.547e-2230.35hypothetical protein PHYSODRAFT_540491 [Phytophtho... [more]
gi|953502367|emb|CEG36553.1|6.135e-2131.62Nuclear matrix protein [Plasmopara halstedii][more]
gi|970642063|gb|KUF83869.1|9.059e-2133.79THO complex subunit 1 [Phytophthora nicotianae][more]
gi|970628274|gb|KUF75938.1|1.582e-2033.79THO complex subunit 1 [Phytophthora nicotianae][more]
gi|566012783|gb|ETI35694.1|2.380e-2033.79hypothetical protein F443_18010 [Phytophthora para... [more]
gi|570316552|gb|ETO64500.1|2.403e-2033.79hypothetical protein F444_18035 [Phytophthora para... [more]
gi|675175301|ref|XP_008896535.1|2.403e-2033.79hypothetical protein PPTG_04381 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3209rna3209Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications