EWM27484.1, cds3201 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|585109745|gb|EWM27484.1| (THO complex, subunit THOC1 [Nannochloropsis gaditana]) HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query: 1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT 284
MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT
Sbjct: 1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKGEDGEEDGGGEGKGKEEGRRKRKRKENGEAGAEQEVMHGT 284
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|553186547|ref|XP_005854439.1| (tho complex subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422294622|gb|EKU21922.1| tho complex subunit, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 309.686 bits (792), Expect = 2.364e-104 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query: 1 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA 153
MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA
Sbjct: 8 MEAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKA 160
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|676395791|ref|XP_009041173.1| (hypothetical protein AURANDRAFT_72585 [Aureococcus anophagefferens] >gi|323448287|gb|EGB04188.1| hypothetical protein AURANDRAFT_72585 [Aureococcus anophagefferens]) HSP 1 Score: 108.612 bits (270), Expect = 5.110e-23 Identity = 86/252 (34.13%), Postives = 122/252 (48.41%), Query Frame = 0
Query: 5 LGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVA-SPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPR----------PVNLAEVEAEVGEAVGR------TFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDAL 239
+G KYLTNSRL R+QL DP++R Q++TQL +V +Y TA+ SP A P+ + P ++ R+LI T G L L+ V+ RE W +WKRL C P E+P ++ + E ++AL Q Y P+PV ++ E E + + R + E ++ E AEDPE I+EEYHP+H+ V+CWRA+RL A M A LDAL
Sbjct: 111 MGAKYLTNSRLLRIQLRDPVLRMQLVTQLYLVFDYLRRETAIGNKPSPGAEFLSKPDWALP------VLLRVRKLIIATPPNGPERLKSLEEVIEREVNWSTWKRLG-CAP-YERPSQ--SKEQQYAEKRKRAL-------------QSERYSPPVPVILFKRTKLKAGAKLDARENEGTMKDCCARLADAVPSIEAFLEA-YEIAEDPENSIEEEYHPKHDKVYCWRALRLVVANHLTWFAEMHKADLDAL 338
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|695395656|ref|XP_009521220.1| (hypothetical protein PHYSODRAFT_540491 [Phytophthora sojae] >gi|348686117|gb|EGZ25932.1| hypothetical protein PHYSODRAFT_540491 [Phytophthora sojae]) HSP 1 Score: 105.145 bits (261), Expect = 7.547e-22 Identity = 95/313 (30.35%), Postives = 134/313 (42.81%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRC------------EPRIEKPPAPPARTVRTMEAVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR---------LGWA-----ADARVLVGMENA-----SLDALCRKMKGEDGEEDGGGEGKGKEEGRR--------KRKRKEN-GEA 274
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N LA A PPA S+ PK DL + L++ T + G + ++ VL RE+ W+ WK+ ++C E KP AR T + Q L+ + KPS ++ + + +P+ + R +EA DPE I+EEY P + + CWR MR L WA A + ++GME + DA + D K +E GR KRKR ++ GEA
Sbjct: 292 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLARAKPPAGSTT------PKAKFADLTERVVALLKQTPSDGEGFSEMVSYVLERERNWVKWKQ-EKCREYEKYPSAADKEGSAPKPVVKRARRQLTSPLLEQILSESSKPSQILEKIKGKERASEVPL----------------------SAYTERFKEAWDPENGIEEEYWPDKDEMVCWRTMRAAMKGSVDHLDWAVKGTGALVKAVLGMETTDANKDTTDAAASTPRQSSSSGDAEVVKKEQESGREATKDSSGIKRKRSDSRGEA 569
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|953502367|emb|CEG36553.1| (Nuclear matrix protein [Plasmopara halstedii]) HSP 1 Score: 102.834 bits (255), Expect = 6.135e-21 Identity = 80/253 (31.62%), Postives = 115/253 (45.45%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTMEAVRQALAGAGKP---------SGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMRLGWAADARVLVGMENASLDALCRKMKG 245
E F KYLTNSRLFRLQL DP++R +LTQ LI+ + +A PPA S + PK DL L++ T + G Y ++ VL RE+ W+ WK L++C P E+ PA A+ + A P + ++ +Q + +P + + E EV V R +EA DPE I+EEY P +FCWR MR + + L + DAL + + G
Sbjct: 328 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILF------SDMARIKPPADS------TTPKAKFADLTDRVVALLKQTPSDGEGYSEMVSYVLERERNWVKWK-LEKC-PGYERYPA----------AMENDTSAALTPDVKRPRRQLTSLLLEQILSESSKPSKILEKIKGKERATEVSLKV-------YTDRFKEAWDPENGIEEEYWPDKNEMFCWRTMRAAMKTNVKHL-DLAVKGTDALVKGILG 548
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|970642063|gb|KUF83869.1| (THO complex subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 101.679 bits (252), Expect = 9.059e-21 Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N L A PPA S + PK +L + L++ T + G + ++ VL RE+ W+ WK+ ++C P EK P+ + T V++A P + +Q + +P + + E EV + Y R +EA DPE I+EEY P + + CWR MR
Sbjct: 176 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 370
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|970628274|gb|KUF75938.1| (THO complex subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 101.293 bits (251), Expect = 1.582e-20 Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N L A PPA S + PK +L + L++ T + G + ++ VL RE+ W+ WK+ ++C P EK P+ + T V++A P + +Q + +P + + E EV + Y R +EA DPE I+EEY P + + CWR MR
Sbjct: 266 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 460
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|566012783|gb|ETI35694.1| (hypothetical protein F443_18010 [Phytophthora parasitica P1569]) HSP 1 Score: 100.908 bits (250), Expect = 2.380e-20 Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N L A PPA S + PK +L + L++ T + G + ++ VL RE+ W+ WK+ ++C P EK P+ + T V++A P + +Q + +P + + E EV + Y R +EA DPE I+EEY P + + CWR MR
Sbjct: 330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|570316552|gb|ETO64500.1| (hypothetical protein F444_18035 [Phytophthora parasitica P1976]) HSP 1 Score: 100.908 bits (250), Expect = 2.403e-20 Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N L A PPA S + PK +L + L++ T + G + ++ VL RE+ W+ WK+ ++C P EK P+ + T V++A P + +Q + +P + + E EV + Y R +EA DPE I+EEY P + + CWR MR
Sbjct: 330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524
BLAST of EWM27484.1 vs. NCBI_GenBank
Match: gi|675175301|ref|XP_008896535.1| (hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310] >gi|568104279|gb|ETN18936.1| hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310]) HSP 1 Score: 100.908 bits (250), Expect = 2.403e-20 Identity = 74/219 (33.79%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 2 EAFLGCKYLTNSRLFRLQLHDPLIRTQVLTQLLIVLNYASAATALAVASPPASSSPAPNPSPPKKGANDLVKHARRLIRNTSAQGAVYLGVLDTVLHREQAWLSWKRLQRCEPRIEKPPAPPARTVRTME--AVRQALAGAGKPSGVVAQQQKAFYGRPLPVPRPVNLAEVEAEVGEAVGRTFENYVRPRMEEAEDPEACIDEEYHPRHEPVFCWRAMR 218
E F KYLTNSRLFRLQL DP++R +LTQ LI+ N L A PPA S + PK +L + L++ T + G + ++ VL RE+ W+ WK+ ++C P EK P+ + T V++A P + +Q + +P + + E EV + Y R +EA DPE I+EEY P + + CWR MR
Sbjct: 330 EHFFQPKYLTNSRLFRLQLRDPILRECMLTQFLILFN------DLTRAKPPAGS------TTPKAKFAELTERVVALLKQTPSDGEGFNEMVSVVLERERNWVKWKQ-EKC-PEYEKYPSAADKESSTSSKPVVKRARRQLTSP---LLEQILSESSKPSQILEKIKGKERATEV------SLTAYT-DRFKEAWDPENGIEEEYWPDKDEMVCWRTMR 524 The following BLAST results are available for this feature:
BLAST of EWM27484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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