EWM30641.1, cds32 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM30641.1
Unique Name	cds32
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002455.1:102109..102426 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM30641.1
Product	methyltransferase type 11
Orig transcript id	gnl\|cribi\|Naga_101995g2.958.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:102109..102426 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016740	transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR029063	SAM-dependent_MTases

Homology

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|585113327|gb|EWM30641.1| (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 205.297 bits (521), Expect = 7.239e-67
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query:    1 MFLLSPLFSCLLVLLCLPPSLPSSPPPSLPLPGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKPRS 105
            MFLLSPLFSCLLVLLCLPPSLPSSPPPSLPLPGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKPRS
Sbjct:    1 MFLLSPLFSCLLVLLCLPPSLPSSPPPSLPLPGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKPRS 105

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|303271891|ref|XP_003055307.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226463281|gb|EEH60559.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 102.834 bits (255), Expect = 2.004e-25
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKPRS 105
            PGGT  +TDN+P+S VIQ LP  +  LMKSTEP S+EY+++D+E ML E+GFE V T  TDPRHRT+LA+KP+ 
Sbjct:  111 PGGTFVMTDNNPKSAVIQNLPPALFTLMKSTEPHSNEYYTIDIEGMLTEIGFEHVHTEQTDPRHRTVLASKPKK 184

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|662037725|ref|WP_030006346.1| (SAM-dependent methyltransferase [Synechococcus sp. NKBG042902])

HSP 1 Score: 103.219 bits (256), Expect = 1.980e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L+EVGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKEVGFDYRTTVASDPRHRTIIAHKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|501264376|ref|WP_012307394.1| (MULTISPECIES: SAM-dependent methyltransferase [Synechococcus] >gi|169886058|gb|ACA99771.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] >gi|1184395889|emb|SMH55914.1| Methyltransferase domain-containing protein [Synechococcus sp. OG1] >gi|1191924595|emb|SMQ83344.1| Methyltransferase domain-containing protein [Synechococcus sp. 7002])

HSP 1 Score: 103.219 bits (256), Expect = 2.022e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L+EVGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKEVGFDYRTTVASDPRHRTIIAHKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|1011541921|ref|WP_062434668.1| (SAM-dependent methyltransferase [Synechococcus sp. PCC 73109] >gi|975877515|gb|AMA09458.1| methyltransferase type 11 [Synechococcus sp. PCC 73109])

HSP 1 Score: 103.219 bits (256), Expect = 2.022e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L+EVGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKEVGFDYRTTVASDPRHRTIIAHKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|1047312065|ref|WP_065710902.1| (SAM-dependent methyltransferase [Synechococcus sp. PCC 7117] >gi|1046569187|gb|ANV87623.1| methyltransferase type 11 [Synechococcus sp. PCC 7117])

HSP 1 Score: 103.219 bits (256), Expect = 2.176e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L+EVGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKEVGFDYRTTVASDPRHRTIIAHKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|1143529211|dbj|BAW96808.1| (hypothetical protein NIES970_17500 [Synechococcus sp. NIES-970])

HSP 1 Score: 103.219 bits (256), Expect = 2.469e-24
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L++VGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKQVGFDYQTTVASDPRHRTIMARKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|639208139|ref|WP_024546396.1| (class I SAM-dependent methyltransferase [Synechococcus sp. NKBG15041c])

HSP 1 Score: 102.834 bits (255), Expect = 2.715e-24
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L++VGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKQVGFDYQTTVASDPRHRTIIARKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|1047317987|ref|WP_065714336.1| (SAM-dependent methyltransferase [Synechococcus sp. PCC 7003] >gi|1046566162|gb|ANV84601.1| methyltransferase type 11 [Synechococcus sp. PCC 7003])

HSP 1 Score: 102.834 bits (255), Expect = 3.080e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKP 103
            PGG LAI DN+P+SPVIQGLP  + +LMKSTEP+SDEY++ D+E+ L+EVGF+   TVA+DPRHRTI+A KP
Sbjct:  246 PGGCLAIVDNNPKSPVIQGLPPALFVLMKSTEPWSDEYYTFDVESTLKEVGFDYRTTVASDPRHRTIIAHKP 317

[Close]

BLAST of EWM30641.1 vs. NCBI_GenBank
Match: gi|737170975|ref|WP_035157188.1| (SAM-dependent methyltransferase [Calothrix sp. 336/3] >gi|817929312|gb|AKG23800.1| methyltransferase type 11 [Calothrix sp. 336/3])

HSP 1 Score: 102.834 bits (255), Expect = 3.333e-24
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 0

Query:   32 PGGTLAITDNDPRSPVIQGLPKPIALLMKSTEPFSDEYFSLDMEAMLEEVGFEAVETVATDPRHRTILATKPR 104
            PGG +A+ DN+P+SPVIQ LP  +  LMKSTEP+SD+Y++ D+EA LE+VGFE+  TVA+DPRHRTI+A KPR
Sbjct:  245 PGGYIALVDNNPKSPVIQNLPPALFTLMKSTEPWSDDYYTFDIEATLEKVGFESPVTVASDPRHRTIIARKPR 317

The following BLAST results are available for this feature:

BLAST of EWM30641.1 vs. NCBI_GenBank

BLAST of EWM30641.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585113327\|gb\|EWM30641.1\|	7.239e-67	100.00	methyltransferase type 11 [Nannochloropsis gaditan...	[more]
gi\|303271891\|ref\|XP_003055307.1\|	2.004e-25	60.81	predicted protein [Micromonas pusilla CCMP1545] >g...	[more]
gi\|662037725\|ref\|WP_030006346.1\|	1.980e-24	66.67	SAM-dependent methyltransferase [Synechococcus sp....	[more]
gi\|501264376\|ref\|WP_012307394.1\|	2.022e-24	66.67	MULTISPECIES: SAM-dependent methyltransferase [Syn...	[more]
gi\|1011541921\|ref\|WP_062434668.1\|	2.022e-24	66.67	SAM-dependent methyltransferase [Synechococcus sp....	[more]
gi\|1047312065\|ref\|WP_065710902.1\|	2.176e-24	66.67	SAM-dependent methyltransferase [Synechococcus sp....	[more]
gi\|1143529211\|dbj\|BAW96808.1\|	2.469e-24	65.28	hypothetical protein NIES970_17500 [Synechococcus ...	[more]
gi\|639208139\|ref\|WP_024546396.1\|	2.715e-24	65.28	class I SAM-dependent methyltransferase [Synechoco...	[more]
gi\|1047317987\|ref\|WP_065714336.1\|	3.080e-24	66.67	SAM-dependent methyltransferase [Synechococcus sp....	[more]
gi\|737170975\|ref\|WP_035157188.1\|	3.333e-24	64.38	SAM-dependent methyltransferase [Calothrix sp. 336...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna32	rna32	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications