EWM27483.1, cds3191 (CDS) Nannochloropsis gaditana

Overview
NameEWM27483.1
Unique Namecds3191
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:982328..982392 +
Alignment locationCM002460.1:982579..982942 +
Alignment locationCM002460.1:983083..983631 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27483.1
ProductMak16 protein
Orig transcript idgnl|cribi|Naga_100174g3.7298.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:982328..982392 +
CM002460.1supercontigCM002460.1:982579..982942 +
CM002460.1supercontigCM002460.1:983083..983631 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: INTERPRO
TermDefinition
IPR029004L28e/Mak16
IPR006958Mak16
Homology
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|585109744|gb|EWM27483.1| (Mak16 protein [Nannochloropsis gaditana])

HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query:    1 MSAPDEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEEEEYVEGEEEEESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEVKAKAVLRAEAKGNKRGRGERKAERGRRGVAVTLRNRRRGRNRRTRTWRSSTRTRRRWQVWRL 325
            MSAPDEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEEEEYVEGEEEEESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEVKAKAVLRAEAKGNKRGRGERKAERGRRGVAVTLRNRRRGRNRRTRTWRSSTRTRRRWQVWRL
Sbjct:    1 MSAPDEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEEEEYVEGEEEEESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEVKAKAVLRAEAKGNKRGRGERKAERGRRGVAVTLRNRRRGRNRRTRTWRSSTRTRRRWQVWRL 325          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|676379133|ref|XP_009032845.1| (hypothetical protein AURANDRAFT_4711, partial [Aureococcus anophagefferens] >gi|323456307|gb|EGB12174.1| hypothetical protein AURANDRAFT_4711, partial [Aureococcus anophagefferens])

HSP 1 Score: 280.026 bits (715), Expect = 6.501e-91
Identity = 145/232 (62.50%), Postives = 179/232 (77.16%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDE------EEEEEEEEEEEEEYVEGEEEEESEEEEEEE 230
            DE+IWQ +N  FCSFKS + +K H FCRN  NVTGLC +SACPLANSRYATIRE EG CYL++KT ERAH P KLW+KI+LP NYAKAL  V+E LE+FPK+LQHRNKQRLT+I+QYLIRMR+L L++ +P +  +HKKV+RRE ++E KAL AAKL ++IE ELL RL+QGTYGDIYNFPE  Y+  LD   + E      E E+EEEEE   EY+E  E+ ES+ E+ E+
Sbjct:    2 DELIWQSLNGNFCSFKSTV-SKTHNFCRNEQNVTGLCNKSACPLANSRYATIREIEGRCYLMIKTIERAHMPKKLWQKIKLPRNYAKALAVVTEELEHFPKFLQHRNKQRLTRIYQYLIRMRKLALRS-RPHMAVVHKKVERRENRKEVKALVAAKLNKSIESELLQRLKQGTYGDIYNFPEMHYNAALDSAQDLELAEMEAEYEDEEEEERLVEYIEAAEDFESDMEDLED 231          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|299115323|emb|CBN74140.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 276.559 bits (706), Expect = 6.581e-88
Identity = 161/252 (63.89%), Postives = 186/252 (73.81%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEEEEYVEGEEEEESEEEEEEEEREFVTGDFEEEE-DMED----GASY 251
            D++IWQ++N+QFCSFKSKI AKE TFCRN YNVTGLC +S+CPLANSRYATIRE +G CYL +KT ERAHTP  LWEKI+L  NY KALE+VS  LE+FPK+LQHR+KQRLTKIHQYLIRMR+LKLKA   KLV I+ KV++REK RE KAL AAKLE++IE ELL RL++GTYGDIYNFPE  Y K L               E E+EY E   E   EEEEEEE       D EE+E D+ED    G SY
Sbjct:    4 DDVIWQVVNYQFCSFKSKI-AKEQTFCRNEYNVTGLCNKSSCPLANSRYATIREHDGVCYLYIKTIERAHTPKNLWEKIKLSRNYGKALERVSRELEFFPKHLQHRSKQRLTKIHQYLIRMRKLKLKAKP-KLVTINPKVEKREKMREKKALVAAKLERSIEGELLERLKKGTYGDIYNFPEVQYDKAL--------------MEAEDEYAEQNPEAMEEEEEEEEGEVEYVEDLEEDESDIEDTAEWGGSY 239          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|953502864|emb|CEG36191.1| (RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [Plasmopara halstedii])

HSP 1 Score: 272.707 bits (696), Expect = 5.371e-87
Identity = 125/194 (64.43%), Postives = 158/194 (81.44%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGE 198
            DE+IW +I+ QFCSFKSK+   +  FC N YNVTGLC RSACPLANSRYAT+REE G CYL +KT ERAHTP +LWE+++L  NY K+L ++ E L+++PK L H+ KQRLTKIHQYL+RMR+L L+  KPKLV I+KK+DRREK+RE KA+ AAKL+ +IEKELL RL++GTYGDIYNFPE  + KVL ++G+
Sbjct:    4 DEVIWSVISKQFCSFKSKLPDTKSMFCSNLYNVTGLCNRSACPLANSRYATVREENGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKCKQRLTKIHQYLMRMRKLTLQT-KPKLVVINKKIDRREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLADKGK 196          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|219129683|ref|XP_002185012.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403507|gb|EEC43459.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 268.855 bits (686), Expect = 1.932e-85
Identity = 127/196 (64.80%), Postives = 157/196 (80.10%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKI----NAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLK---ANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVL 193
            DE+IW +INHQFCSFK+ I    + K H FCR+PY+VTGLC R++CPLANS+YATIREE G  +L +KT ERAH+P  LWEKI L  NY KAL ++ E L++FPK L HRNKQRLTKIHQYLIRMR+++LK     K K+VG+H+K+D+RE++RE KAL AAK+E+NIEKEL  RL +GTYGDIYNFPET+Y K L
Sbjct:    4 DEMIWSVINHQFCSFKTTIGKALSDKTH-FCRHPYSVTGLCNRTSCPLANSKYATIREENGRIHLYMKTVERAHSPKNLWEKIVLSRNYGKALAQLDEHLQFFPKVLMHRNKQRLTKIHQYLIRMRKIELKVRSGRKAKMVGVHRKIDQREERRERKALVAAKIERNIEKELTERLAKGTYGDIYNFPETSYQKAL 198          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|551665644|ref|XP_005835584.1| (hypothetical protein GUITHDRAFT_159496 [Guillardia theta CCMP2712] >gi|428179734|gb|EKX48604.1| hypothetical protein GUITHDRAFT_159496 [Guillardia theta CCMP2712])

HSP 1 Score: 269.24 bits (687), Expect = 3.092e-85
Identity = 126/190 (66.32%), Postives = 151/190 (79.47%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLD 194
            DE+IWQ IN QFCSFK+++  KE  FCRN +NVTGLC R +CPLANS+YATI EE+G C L +KT ERAH+PA LWEKIRL  NYAKAL+++ E L+Y+P +L H+ KQRLTKI QYLIRMR+L L+  +PKLVG+HKKV++RE+ REAKAL AA +E  IEKELL RLR GTYGDIYNFP   Y   LD
Sbjct:    4 DEVIWQTINQQFCSFKARLTDKEQNFCRNEHNVTGLCNRQSCPLANSQYATIHEEDGECILYIKTIERAHSPANLWEKIRLSKNYAKALQQIDEHLKYWPNFLVHKCKQRLTKITQYLIRMRKLSLQV-RPKLVGVHKKVEKRERNREAKALRAANIEGAIEKELLERLRSGTYGDIYNFPMKEYSNALD 192          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|301118847|ref|XP_002907151.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105663|gb|EEY63715.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 259.996 bits (663), Expect = 8.276e-83
Identity = 128/194 (65.98%), Postives = 162/194 (83.51%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGE 198
            DE+IW +I++QFCSFKSK+    + FC NPYNVTGLC RSACPLANSRYATIREE+G CYL +KT ERAHTP +LWE+++L  NY K+L ++ E L+++PK L H+NKQRLTKIHQYL+RMR+L LK  KPKLV I+KK++RREK+RE KA+ AAKL+ +IEKELL RL++GTYGDIYNFPE  + KVL ++G+
Sbjct:    4 DEVIWSVISNQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREEDGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKLIHKNKQRLTKIHQYLMRMRKLTLKT-KPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLADKGK 196          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|828217233|ref|XP_012560593.1| (PREDICTED: protein MAK16 homolog [Hydra vulgaris])

HSP 1 Score: 260.766 bits (665), Expect = 1.119e-82
Identity = 139/232 (59.91%), Postives = 177/232 (76.29%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVL-DEEGEDEEEEEEEEEEEEE------EYVEGEEEEESEEEEEE 229
            DE+IWQ+IN  FCSFK K   +  T C+N YNV+GLC R +CPLANSRYATIRE+EG CYL +KT ERAHTP+KLWEKI+L  NY  A+E++ + L Y+P Y+ H+ KQR T+I QYLIRMR+L+LK  K KLV ++KK++RREK RE KAL AA++E+NIEKELL RL++GTYGDIYNFPET + KVL D+E E +  E E+EEE EE      E+V  +E EE++ E E+
Sbjct:    4 DEVIWQLINRGFCSFKVK--TQTTTLCKNEYNVSGLCNRQSCPLANSRYATIREKEGVCYLYMKTIERAHTPSKLWEKIKLARNYESAMEQIDKNLIYWPSYIIHKCKQRFTRITQYLIRMRKLRLKTQK-KLVTVNKKIERREKTREKKALVAAQIEKNIEKELLERLKKGTYGDIYNFPETAFDKVLEDQEIESDHGENEDEEEVEEDGEDIPEFVADDEIEETDNEMED 232          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|1214711125|gb|OWZ22158.1| (hypothetical protein PHMEG_0003185 [Phytophthora megakarya])

HSP 1 Score: 258.07 bits (658), Expect = 5.379e-82
Identity = 128/194 (65.98%), Postives = 160/194 (82.47%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGE 198
            DE+IW +I+ QFCSFKSK+    + FC NPYNVTGLC RSACPLANSRYATIREEEG CYL +KT ERAHTP +LWE+++L  NY K+L ++ E L+++PK + H+NKQRLTKIHQYL+RMR+L LK  KPKLV I+KK++RREK+RE KA+ AAKL+ +IEKELL RL++GTYGDIYNFPE  + KVL + G+
Sbjct:    4 DEVIWSVISKQFCSFKSKLPGTGNMFCSNPYNVTGLCNRSACPLANSRYATIREEEGVCYLYMKTIERAHTPNRLWERVKLSKNYTKSLAQIDEQLQFWPKKMVHKNKQRLTKIHQYLMRMRKLTLKT-KPKLVVINKKIERREKRREKKAMVAAKLDNSIEKELLERLQKGTYGDIYNFPEREFSKVLADNGK 196          
BLAST of EWM27483.1 vs. NCBI_GenBank
Match: gi|325182822|emb|CCA17277.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 259.61 bits (662), Expect = 6.080e-82
Identity = 147/292 (50.34%), Postives = 196/292 (67.12%), Query Frame = 0
Query:    5 DEIIWQIINHQFCSFKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEEE---------EYVEGEEEEESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEV--KAKAVLRAEAKGNKRGRGERKA 285
            DE+IW +I+ QFCSFKSK+ A +  FCRN YNV+GLC R ACPLANSRYAT+RE+EG CYL +KT ERAH+P +LWE+I+L  NY+++LE++ + L+++PK + H+ KQR TKIHQYL+RMR+L+ +  KPKLV I+KK++RRE +RE KA AAAK++  IEKELL RL +GTYGDIYNFPE  +  +++ +G  + EEE   EEE E         EYVE  EE E E E           DFE     E   S   +++ +D DE   + K  L+     NK+ +  RKA
Sbjct:    4 DEVIWGVISGQFCSFKSKLPATKAMFCRNEYNVSGLCNRGACPLANSRYATVREQEGICYLYMKTIERAHSPKRLWERIKLSRNYSRSLEQIDQHLQFWPKKMIHKVKQRQTKIHQYLLRMRKLQGQI-KPKLVVINKKIERRESRREKKAQAAAKIDSAIEKELLERLEKGTYGDIYNFPEKEFSAIINNKGVAQTEEENGVEEELEYENEENALTEYVEDFEESEDEIE-----------DFESGNISESDESTTSDDDNQDEDECIGRRKRGLKDSTNANKKSKS-RKA 282          
The following BLAST results are available for this feature:
BLAST of EWM27483.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109744|gb|EWM27483.1|0.000e+0100.00Mak16 protein [Nannochloropsis gaditana][more]
gi|676379133|ref|XP_009032845.1|6.501e-9162.50hypothetical protein AURANDRAFT_4711, partial [Aur... [more]
gi|299115323|emb|CBN74140.1|6.581e-8863.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|953502864|emb|CEG36191.1|5.371e-8764.43RNA-binding nuclear protein (MAK16) containing a d... [more]
gi|219129683|ref|XP_002185012.1|1.932e-8564.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551665644|ref|XP_005835584.1|3.092e-8566.32hypothetical protein GUITHDRAFT_159496 [Guillardia... [more]
gi|301118847|ref|XP_002907151.1|8.276e-8365.98conserved hypothetical protein [Phytophthora infes... [more]
gi|828217233|ref|XP_012560593.1|1.119e-8259.91PREDICTED: protein MAK16 homolog [Hydra vulgaris][more]
gi|1214711125|gb|OWZ22158.1|5.379e-8265.98hypothetical protein PHMEG_0003185 [Phytophthora m... [more]
gi|325182822|emb|CCA17277.1|6.080e-8250.34conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3199rna3199Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications