EWM27480.1, cds3190 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|585109741|gb|EWM27480.1| (rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0 Query: 1 MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE 284 MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE Sbjct: 1 MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE 284
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|551637659|ref|XP_005821647.1| (hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712] >gi|428165677|gb|EKX34667.1| hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712]) HSP 1 Score: 113.235 bits (282), Expect = 9.743e-27 Identity = 65/199 (32.66%), Postives = 105/199 (52.76%), Query Frame = 0 Query: 62 SISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSK 259 SI D D+ A VD S + V P + CG+C A Y + + +G +V+C VC + WFQ++ RL G + +P +K + KGA ++FVGNLPF ++EA++Q +F +HG VVSV+++ DQ + R +GFGFV+ +++ + A++ L+G +DGR I+V + K Sbjct: 26 SIEDPYDEFATVDFTWVESQSGKV----------PFDCKYTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSISEDK 214
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|298714936|emb|CBJ27692.1| (RNA recognition motif-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 114.39 bits (285), Expect = 5.758e-26 Identity = 59/171 (34.50%), Postives = 97/171 (56.73%), Query Frame = 0 Query: 95 DPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA 260 DP++Q +V+CG+C A Y + + V G ++C VCG+ WFQ + R L+ +++KD+ ED AE + ++FVGN+PFS++E D+ +F G V S +V D+ S+G+G V+M +E+G +AI AL+G E+ GR + V++G S + Sbjct: 128 DPSLQGSAGDTYVKCGKCQACYPMDLE-VLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKKF----------AGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 287
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1210515547|dbj|GAX25626.1| (hypothetical protein FisN_28Hh106 [Fistulifera solaris]) HSP 1 Score: 109.383 bits (272), Expect = 1.769e-25 Identity = 55/155 (35.48%), Postives = 89/155 (57.42%), Query Frame = 0 Query: 101 FVRCGRCNAAYAVGA-DLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVR 254 +VRCG+C + + + D G R++C VC H+WFQ+ ++L L+ G+ + PE E++ N++ P G +++GN+ F E D+ E+F G V V++V+D R++GFGF+ M KE+GE+AI L+G + GR I VR Sbjct: 43 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQNNMQKGLSP----KFMGDFKLYIGNIAFECHEDDLYEVFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEDGEKAIEELNGAPVRGRNIAVR 193
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1210519764|dbj|GAX21414.1| (RNA binding protein fox-1 [Fistulifera solaris]) HSP 1 Score: 108.997 bits (271), Expect = 3.268e-25 Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 0 Query: 101 FVRCGRCNAAYAVGA-DLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVR 254 +VRCG+C + + + D G R++C VC H+WFQ+ ++L L+ G+ + PE E++ N++ P G ++VGN+ F E D+ E+F G V V++V+D R++GFGF+ M KE GE+AI L+G + GR I VR Sbjct: 54 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQSNMQKGLSP----KFMGDFKLYVGNIAFECHEDDLYEIFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIEELNGTPVRGRNIAVR 204
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|551616642|ref|XP_005789164.1| (hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516] >gi|485642668|gb|EOD36735.1| hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 106.686 bits (265), Expect = 4.447e-24 Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0 Query: 88 GDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGG-RVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSK 259 G AA P V + C C A+Y+V D + P G RV+C C H WFQ+ RL L L +YP+++K+++A + A+ A +VGNLPF + E ++ ++F E+G VV V ++ D+ RS+GF FV M EEG A+ AL+G + GR INV G + Sbjct: 38 GAAAVGERPCV---ITCSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMAAG--------KPAEARAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGRQQ 199
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1088479714|gb|OHD12824.1| (hypothetical protein A2Z98_17440 [Spirochaetes bacterium GWB1_27_13] >gi|1088495842|gb|OHD26640.1| hypothetical protein A2Y34_01660 [Spirochaetes bacterium GWC1_27_15]) HSP 1 Score: 86.6557 bits (213), Expect = 7.326e-18 Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 180 AISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA-QPRMRKERTQMKRAGGGGSGG 281 + S++VGNLP+S+ E ++E+FS +G V+S I+ D++ +SKGFGFVEM+ EE E AI LD E++GR I V L K +PR R M+R G GG Sbjct: 2 STSIYVGNLPYSLTEDSLKEIFSPYGSVLSTRIITDKMTGKSKGFGFVEMSSNEEAEAAIKELDNGEIEGRNIRVNLAKPKEDKPRGGGGRNNMRRNDGKSFGG 105
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1085061978|gb|OGS62067.1| (RNA-binding protein [Flavobacteria bacterium GWF1_32_7]) HSP 1 Score: 86.6557 bits (213), Expect = 7.559e-18 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0 Query: 181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281 +++FVG+LPFS+ EAD++ F E+G V SV I+ D+ RSKGFGFVEMA+ E ++AI L+G ++GR I V +K++P+ ER R GG GG Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNSGGSRGG 98
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|751433403|gb|KIM09705.1| (RNA-binding protein [Sulfurovum sp. FS06-10]) HSP 1 Score: 86.6557 bits (213), Expect = 7.559e-18 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0 Query: 181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281 +++FVG+LPFS+ EAD++ F E+G V SV I+ D+ RSKGFGFVEMA+ E ++AI L+G ++GR I V +K++P+ ER R GG GG Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNAGGNRGG 98
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|652326943|ref|WP_026724257.1| (RNA-binding protein [Flavobacterium sasangense]) HSP 1 Score: 86.6557 bits (213), Expect = 8.481e-18 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0 Query: 181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281 +++FVG+LPFS+ EAD++ F E+G V SV I+ D+ RSKGFGFVEMA+ E ++AI L+G ++GR I V +K++P+ ER R GG GG Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNAGGSRGG 98 The following BLAST results are available for this feature:
BLAST of EWM27480.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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