EWM27480.1, cds3190 (CDS) Nannochloropsis gaditana

Overview
NameEWM27480.1
Unique Namecds3190
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:981208..981349 -
Alignment locationCM002460.1:980660..980970 -
Alignment locationCM002460.1:980312..980431 -
Alignment locationCM002460.1:979972..980079 -
Alignment locationCM002460.1:979593..979766 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27480.1
Productrna-binding protein
Orig transcript idgnl|cribi|Naga_100174g2.7295.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:981208..981349 -
CM002460.1supercontigCM002460.1:980660..980970 -
CM002460.1supercontigCM002460.1:980312..980431 -
CM002460.1supercontigCM002460.1:979972..980079 -
CM002460.1supercontigCM002460.1:979593..979766 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR011723Znf/thioredoxin_put
IPR000504RRM_dom
Homology
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|585109741|gb|EWM27480.1| (rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE 284
            MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE
Sbjct:    1 MVNSSRIINGALFLAFVVALTQGYHFPPTTRSLQRRCMRSVSRYHAAGNPRARHSLLPMPSSISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGSEE 284          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|551637659|ref|XP_005821647.1| (hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712] >gi|428165677|gb|EKX34667.1| hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712])

HSP 1 Score: 113.235 bits (282), Expect = 9.743e-27
Identity = 65/199 (32.66%), Postives = 105/199 (52.76%), Query Frame = 0
Query:   62 SISDFLDDTADVDKEPRPSPAAAVGVGDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSK 259
            SI D  D+ A VD     S +  V          P    +  CG+C A Y +    +  +G +V+C VC + WFQ++ RL     G   + +P    +K  +              KGA ++FVGNLPF ++EA++Q +F +HG VVSV+++ DQ + R +GFGFV+  +++  + A++ L+G  +DGR I+V +   K
Sbjct:   26 SIEDPYDEFATVDFTWVESQSGKV----------PFDCKYTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSISEDK 214          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|298714936|emb|CBJ27692.1| (RNA recognition motif-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 5.758e-26
Identity = 59/171 (34.50%), Postives = 97/171 (56.73%), Query Frame = 0
Query:   95 DPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA 260
            DP++Q      +V+CG+C A Y +  + V   G  ++C VCG+ WFQ + R   L+  +++KD+ ED     AE  +               ++FVGN+PFS++E D+  +F   G V S  +V D+   S+G+G V+M  +E+G +AI AL+G E+ GR + V++G S +
Sbjct:  128 DPSLQGSAGDTYVKCGKCQACYPMDLE-VLGRGRIIECSVCGNRWFQTAERALTLTDNFLMKDWTEDRVAATAEAAKKF----------AGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 287          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1210515547|dbj|GAX25626.1| (hypothetical protein FisN_28Hh106 [Fistulifera solaris])

HSP 1 Score: 109.383 bits (272), Expect = 1.769e-25
Identity = 55/155 (35.48%), Postives = 89/155 (57.42%), Query Frame = 0
Query:  101 FVRCGRCNAAYAVGA-DLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVR 254
            +VRCG+C + + +   D     G R++C VC H+WFQ+ ++L  L+ G+ +   PE   E++  N++    P       G   +++GN+ F   E D+ E+F   G V  V++V+D   R++GFGF+ M  KE+GE+AI  L+G  + GR I VR
Sbjct:   43 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQNNMQKGLSP----KFMGDFKLYIGNIAFECHEDDLYEVFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEDGEKAIEELNGAPVRGRNIAVR 193          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1210519764|dbj|GAX21414.1| (RNA binding protein fox-1 [Fistulifera solaris])

HSP 1 Score: 108.997 bits (271), Expect = 3.268e-25
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 0
Query:  101 FVRCGRCNAAYAVGA-DLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVR 254
            +VRCG+C + + +   D     G R++C VC H+WFQ+ ++L  L+ G+ +   PE   E++  N++    P       G   ++VGN+ F   E D+ E+F   G V  V++V+D   R++GFGF+ M  KE GE+AI  L+G  + GR I VR
Sbjct:   54 YVRCGKCQSVFEMTENDFGSRNGRRLECSVCTHSWFQSKDKLLKLNEGFEMVPLPERDMERIQSNMQKGLSP----KFMGDFKLYVGNIAFECHEDDLYEIFGRVGEVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIEELNGTPVRGRNIAVR 204          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|551616642|ref|XP_005789164.1| (hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516] >gi|485642668|gb|EOD36735.1| hypothetical protein EMIHUDRAFT_420859 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 106.686 bits (265), Expect = 4.447e-24
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0
Query:   88 GDAAPKSDPNVQYFVRCGRCNAAYAVGADLVRPEGG-RVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSK 259
            G AA    P V   + C  C A+Y+V  D + P  G RV+C  C H WFQ+  RL  L     L +YP+++K+++A            + A+ A   +VGNLPF + E ++ ++F E+G VV V ++ D+  RS+GF FV M   EEG  A+ AL+G  + GR INV  G  +
Sbjct:   38 GAAAVGERPCV---ITCSNCKASYSVEEDALGPGAGKRVRCSNCDHEWFQSVARLARLPEDMELVEYPQEMKDRMAAG--------KPAEARAAFRAYVGNLPFGVVEEELADLFGEYGNVVHVNVMTDEDGRSRGFAFVNMEIAEEGAAAVEALNGHMLQGRAINVSEGRQQ 199          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1088479714|gb|OHD12824.1| (hypothetical protein A2Z98_17440 [Spirochaetes bacterium GWB1_27_13] >gi|1088495842|gb|OHD26640.1| hypothetical protein A2Y34_01660 [Spirochaetes bacterium GWC1_27_15])

HSP 1 Score: 86.6557 bits (213), Expect = 7.326e-18
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  180 AISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA-QPRMRKERTQMKRAGGGGSGG 281
            + S++VGNLP+S+ E  ++E+FS +G V+S  I+ D++  +SKGFGFVEM+  EE E AI  LD  E++GR I V L   K  +PR    R  M+R  G   GG
Sbjct:    2 STSIYVGNLPYSLTEDSLKEIFSPYGSVLSTRIITDKMTGKSKGFGFVEMSSNEEAEAAIKELDNGEIEGRNIRVNLAKPKEDKPRGGGGRNNMRRNDGKSFGG 105          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|1085061978|gb|OGS62067.1| (RNA-binding protein [Flavobacteria bacterium GWF1_32_7])

HSP 1 Score: 86.6557 bits (213), Expect = 7.559e-18
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0
Query:  181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281
            +++FVG+LPFS+ EAD++  F E+G V SV I+ D+   RSKGFGFVEMA+  E ++AI  L+G  ++GR I V    +K++P+   ER    R  GG  GG
Sbjct:    1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNSGGSRGG 98          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|751433403|gb|KIM09705.1| (RNA-binding protein [Sulfurovum sp. FS06-10])

HSP 1 Score: 86.6557 bits (213), Expect = 7.559e-18
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0
Query:  181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281
            +++FVG+LPFS+ EAD++  F E+G V SV I+ D+   RSKGFGFVEMA+  E ++AI  L+G  ++GR I V    +K++P+   ER    R  GG  GG
Sbjct:    1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNAGGNRGG 98          
BLAST of EWM27480.1 vs. NCBI_GenBank
Match: gi|652326943|ref|WP_026724257.1| (RNA-binding protein [Flavobacterium sasangense])

HSP 1 Score: 86.6557 bits (213), Expect = 8.481e-18
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 0
Query:  181 ISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLN-RSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGG 281
            +++FVG+LPFS+ EAD++  F E+G V SV I+ D+   RSKGFGFVEMA+  E ++AI  L+G  ++GR I V    +K++P+   ER    R  GG  GG
Sbjct:    1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDELNGGTIEGRKIVV----NKSEPKPEGERRSFDRNAGGSRGG 98          
The following BLAST results are available for this feature:
BLAST of EWM27480.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109741|gb|EWM27480.1|0.000e+0100.00rna-binding protein [Nannochloropsis gaditana][more]
gi|551637659|ref|XP_005821647.1|9.743e-2732.66hypothetical protein GUITHDRAFT_119213 [Guillardia... [more]
gi|298714936|emb|CBJ27692.1|5.758e-2634.50RNA recognition motif-containing protein [Ectocarp... [more]
gi|1210515547|dbj|GAX25626.1|1.769e-2535.48hypothetical protein FisN_28Hh106 [Fistulifera sol... [more]
gi|1210519764|dbj|GAX21414.1|3.268e-2536.13RNA binding protein fox-1 [Fistulifera solaris][more]
gi|551616642|ref|XP_005789164.1|4.447e-2437.57hypothetical protein EMIHUDRAFT_420859 [Emiliania ... [more]
gi|1088479714|gb|OHD12824.1|7.326e-1845.19hypothetical protein A2Z98_17440 [Spirochaetes bac... [more]
gi|1085061978|gb|OGS62067.1|7.559e-1846.08RNA-binding protein [Flavobacteria bacterium GWF1_... [more]
gi|751433403|gb|KIM09705.1|7.559e-1846.08RNA-binding protein [Sulfurovum sp. FS06-10][more]
gi|652326943|ref|WP_026724257.1|8.481e-1846.08RNA-binding protein [Flavobacterium sasangense][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3198rna3198Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications