EWM27599.1, cds3106 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|585109866|gb|EWM27599.1| (Ribosomal protein L18e/L15P [Nannochloropsis gaditana]) HSP 1 Score: 385.571 bits (989), Expect = 1.485e-135 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV
Sbjct: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|298707282|emb|CBJ25909.1| (cytoplasmic ribosomal protein L18 [Ectocarpus siliculosus]) HSP 1 Score: 296.59 bits (758), Expect = 3.139e-100 Identity = 144/192 (75.00%), Postives = 166/192 (86.46%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MGIDL +GGRR GHK RT+PKSDNVYL LLVKL+RFLARRTDS F V+LKRL+MSK NR P+++SRL R+M+ KE TAV+VGT+TDD R+LEVPKLSV AL+ T TARARIL AGGE +TFD+LALRAPKGTN VLLRGP + REA+ HFGHR+TV N+HTHD+VKPY RSKGRKFEKARGRRRS GFK+
Sbjct: 1 MGIDLVAGGRRVGHKVRTSPKSDNVYLGLLVKLFRFLARRTDSAFANVVLKRLYMSKTNRAPLSLSRLARYMRNKETSTAVLVGTVTDDVRLLEVPKLSVCALRFTETARARILAAGGECITFDQLALRAPKGTNTVLLRGPKNAREAVRHFGHRTTVNNLHTHDSVKPYIRSKGRKFEKARGRRRSNGFKI 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|669144346|ref|XP_008607735.1| (60S ribosomal protein [Saprolegnia diclina VS20] >gi|813144479|ref|XP_012199763.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|530740669|gb|EQC38911.1| 60S ribosomal protein [Saprolegnia diclina VS20] >gi|641535804|gb|KDO29707.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 273.863 bits (699), Expect = 3.271e-91 Identity = 133/192 (69.27%), Postives = 160/192 (83.33%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG-PHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN V+LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL T ARAR+L AGGEILTFD+LALRAPKG N VLLRG RE HFGH ST+ +VHTHD+VKPY RSKGRKFEKARGRR+S GFKV
Sbjct: 1 MGKDIIAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNEVVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFTEGARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHASTLDSVHTHDHVKPYVRSKGRKFEKARGRRKSRGFKV 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|676387263|ref|XP_009036910.1| (hypothetical protein AURANDRAFT_37496 [Aureococcus anophagefferens] >gi|323452301|gb|EGB08175.1| hypothetical protein AURANDRAFT_37496 [Aureococcus anophagefferens]) HSP 1 Score: 271.937 bits (694), Expect = 1.499e-90 Identity = 136/192 (70.83%), Postives = 156/192 (81.25%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MGID+ +GGRR GHK RT KS+NVYLKLLVKLYRFLARRTDS F +LKRLFMS+ NRPP+++S L R M+ K+ K AV+VGTITDD RML VPK++V AL+ T TARARI++AGGE LTFD+LALRAPKG+N VLLRGP RE SHFGHRST +V TH VKPY R+KGRKFEKARGRR S GFKV
Sbjct: 1 MGIDIVAGGRRVGHKARTDTKSENVYLKLLVKLYRFLARRTDSAFVKTVLKRLFMSRTNRPPLSLSALARFMREKDDKIAVLVGTITDDPRMLTVPKMTVCALRFTETARARIVKAGGECLTFDQLALRAPKGSNTVLLRGPKKAREVYSHFGHRSTTTSVKTHCGVKPYVRAKGRKFEKARGRRHSRGFKV 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1173952065|gb|OQR99816.1| (60S ribosomal protein L18-2 [Achlya hypogyna]) HSP 1 Score: 270.396 bits (690), Expect = 6.436e-90 Identity = 131/192 (68.23%), Postives = 159/192 (82.81%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN +LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL T ARAR+L AGGEILTFD+LALRAPKG N VLLRG RE HFGH ST+ +VHTHD+VKPY RSKGRKFE+ARGRR+S GFKV
Sbjct: 1 MGKDIIAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNECVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFTEGARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHASTLDSVHTHDHVKPYVRSKGRKFERARGRRKSRGFKV 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|673044187|ref|XP_008876054.1| (hypothetical protein H310_11242 [Aphanomyces invadans] >gi|574468334|gb|ETV95353.1| hypothetical protein H310_11242 [Aphanomyces invadans]) HSP 1 Score: 269.626 bits (688), Expect = 1.283e-89 Identity = 130/192 (67.71%), Postives = 160/192 (83.33%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN +LKRL+MS+ N+PP++I+R+ R+MK KE + AV+VGTITDD R+ +VPKL++AAL T +ARAR+L+AGGEILTFD+LALRAPKG N VLLRG RE HFGH ST+ +V+THD+VKPY RSKGRKFEKARGRR S GFKV
Sbjct: 1 MGKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPKLTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRGRKTAREVYRHFGHESTLDSVNTHDHVKPYVRSKGRKFEKARGRRNSRGFKV 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1173952569|gb|OQS00220.1| (60S ribosomal protein L18-2 [Thraustotheca clavata]) HSP 1 Score: 269.24 bits (687), Expect = 1.914e-89 Identity = 129/192 (67.19%), Postives = 160/192 (83.33%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG-PHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
+G D+ +GG+ TG K+RT PKS+NVYL LLV+LYRFLARRTD+ FN V+LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL + +ARAR+L AGGEILTFD+LALRAPKG N VLLRG RE HFGH ST+ +VHTHD+VKPY RSKGRKFE+ARGRR+S GFKV
Sbjct: 6 IGKDIVAGGKSTGRKSRTGPKSENVYLNLLVRLYRFLARRTDAKFNEVVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFSESARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHSSTLDSVHTHDHVKPYVRSKGRKFERARGRRKSRGFKV 197
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|698802576|ref|XP_009834317.1| (hypothetical protein H257_09702 [Aphanomyces astaci] >gi|574110694|gb|ETV76192.1| hypothetical protein H257_09702 [Aphanomyces astaci]) HSP 1 Score: 267.314 bits (682), Expect = 1.252e-88 Identity = 130/192 (67.71%), Postives = 158/192 (82.29%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN +LKRL+MS+ N+PP++I+R+ R+M KE + AV+VGTITDD R+ +VPKL++AAL T +ARARIL+AGGEILTFD+LALRAPKG N VLLRG RE HFGH ST+ +V THD+VKPY RSKGRKFEKARGRR S GFKV
Sbjct: 1 MGKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPLSIARVARYMNKKEDQIAVVVGTITDDIRLFDVPKLTIAALGFTESARARILKAGGEILTFDQLALRAPKGQNTVLLRGRKTAREVYRHFGHESTLDSVKTHDHVKPYVRSKGRKFEKARGRRNSRGFKV 192
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|168067963|ref|XP_001785869.1| (predicted protein [Physcomitrella patens] >gi|162662471|gb|EDQ49322.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 266.544 bits (680), Expect = 1.747e-88 Identity = 138/192 (71.88%), Postives = 158/192 (82.29%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MGIDLK+GGR K RTAPKSDNVYLKLLVKLYRFL RRTD+ FN+V+LKRLFMS+ NRPPI++SRLV++M GKEGK AVIVGT+TDD R+ EVP L VAAL+ T TARARIL++GGE+LTFD+LALRAP G+NCVLLRGP + REA+ HFG G +H KPY RSKGRKFEKARGRR S GFKV
Sbjct: 1 MGIDLKAGGRNKKTK-RTAPKSDNVYLKLLVKLYRFLVRRTDAPFNSVVLKRLFMSRINRPPISMSRLVKYMTGKEGKIAVIVGTVTDDTRIYEVPALKVAALRFTETARARILKSGGEVLTFDQLALRAPTGSNCVLLRGPKNAREAVKHFG---APGVPQSH--AKPYVRSKGRKFEKARGRRNSRGFKV 186
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1072228636|gb|OEU13371.1| (RL18, ribosomal protein 18 60S large ribosomal subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 263.848 bits (673), Expect = 2.332e-87 Identity = 132/192 (68.75%), Postives = 150/192 (78.12%), Query Frame = 0
Query: 1 MGIDLKSGGRRTGHKTRTA-PKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
MGIDLK+GGRRTGHK+ K+ N Y +LL+KLY+FL+RRTDS F A +LKRL MSK N+PPI ++RL R+M KE K AVIV +TDD RMLE PK++V AL T TAR RI+ AGGE LTFD+LALRAPKG VLLRGP REAL+HFGHR TV N HTHD VKPY RS GRKFEKARGRRRS GFKV
Sbjct: 1 MGIDLKAGGRRTGHKSSMKIVKTKNPYNRLLIKLYKFLSRRTDSKFCATVLKRLHMSKVNQPPIGLNRLSRYMTNKESKIAVIVAKVTDDVRMLECPKMTVCALAFTETARKRIVGAGGECLTFDQLALRAPKGNGTVLLRGPKSREALAHFGHRVTVNNPHTHDGVKPYVRSTGRKFEKARGRRRSKGFKV 192 The following BLAST results are available for this feature:
BLAST of EWM27599.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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