EWM27599.1, cds3106 (CDS) Nannochloropsis gaditana

Overview
NameEWM27599.1
Unique Namecds3106
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:746074..746118 +
Alignment locationCM002460.1:746449..746979 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27599.1
ProductRibosomal protein L18e/L15P
Orig transcript idgnl|cribi|Naga_100015g48.6415.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:746074..746118 +
CM002460.1supercontigCM002460.1:746449..746979 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR021132Ribosomal_L18e_CS
IPR000039Ribosomal_L18e
IPR021131Ribosomal_L18e/L15P
Homology
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|585109866|gb|EWM27599.1| (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 385.571 bits (989), Expect = 1.485e-135
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV
Sbjct:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|298707282|emb|CBJ25909.1| (cytoplasmic ribosomal protein L18 [Ectocarpus siliculosus])

HSP 1 Score: 296.59 bits (758), Expect = 3.139e-100
Identity = 144/192 (75.00%), Postives = 166/192 (86.46%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MGIDL +GGRR GHK RT+PKSDNVYL LLVKL+RFLARRTDS F  V+LKRL+MSK NR P+++SRL R+M+ KE  TAV+VGT+TDD R+LEVPKLSV AL+ T TARARIL AGGE +TFD+LALRAPKGTN VLLRGP + REA+ HFGHR+TV N+HTHD+VKPY RSKGRKFEKARGRRRS GFK+
Sbjct:    1 MGIDLVAGGRRVGHKVRTSPKSDNVYLGLLVKLFRFLARRTDSAFANVVLKRLYMSKTNRAPLSLSRLARYMRNKETSTAVLVGTVTDDVRLLEVPKLSVCALRFTETARARILAAGGECITFDQLALRAPKGTNTVLLRGPKNAREAVRHFGHRTTVNNLHTHDSVKPYIRSKGRKFEKARGRRRSNGFKI 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|669144346|ref|XP_008607735.1| (60S ribosomal protein [Saprolegnia diclina VS20] >gi|813144479|ref|XP_012199763.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65] >gi|530740669|gb|EQC38911.1| 60S ribosomal protein [Saprolegnia diclina VS20] >gi|641535804|gb|KDO29707.1| 60S ribosomal protein [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 273.863 bits (699), Expect = 3.271e-91
Identity = 133/192 (69.27%), Postives = 160/192 (83.33%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG-PHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN V+LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL  T  ARAR+L AGGEILTFD+LALRAPKG N VLLRG    RE   HFGH ST+ +VHTHD+VKPY RSKGRKFEKARGRR+S GFKV
Sbjct:    1 MGKDIIAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNEVVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFTEGARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHASTLDSVHTHDHVKPYVRSKGRKFEKARGRRKSRGFKV 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|676387263|ref|XP_009036910.1| (hypothetical protein AURANDRAFT_37496 [Aureococcus anophagefferens] >gi|323452301|gb|EGB08175.1| hypothetical protein AURANDRAFT_37496 [Aureococcus anophagefferens])

HSP 1 Score: 271.937 bits (694), Expect = 1.499e-90
Identity = 136/192 (70.83%), Postives = 156/192 (81.25%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MGID+ +GGRR GHK RT  KS+NVYLKLLVKLYRFLARRTDS F   +LKRLFMS+ NRPP+++S L R M+ K+ K AV+VGTITDD RML VPK++V AL+ T TARARI++AGGE LTFD+LALRAPKG+N VLLRGP   RE  SHFGHRST  +V TH  VKPY R+KGRKFEKARGRR S GFKV
Sbjct:    1 MGIDIVAGGRRVGHKARTDTKSENVYLKLLVKLYRFLARRTDSAFVKTVLKRLFMSRTNRPPLSLSALARFMREKDDKIAVLVGTITDDPRMLTVPKMTVCALRFTETARARIVKAGGECLTFDQLALRAPKGSNTVLLRGPKKAREVYSHFGHRSTTTSVKTHCGVKPYVRAKGRKFEKARGRRHSRGFKV 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1173952065|gb|OQR99816.1| (60S ribosomal protein L18-2 [Achlya hypogyna])

HSP 1 Score: 270.396 bits (690), Expect = 6.436e-90
Identity = 131/192 (68.23%), Postives = 159/192 (82.81%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN  +LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL  T  ARAR+L AGGEILTFD+LALRAPKG N VLLRG    RE   HFGH ST+ +VHTHD+VKPY RSKGRKFE+ARGRR+S GFKV
Sbjct:    1 MGKDIIAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNECVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFTEGARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHASTLDSVHTHDHVKPYVRSKGRKFERARGRRKSRGFKV 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|673044187|ref|XP_008876054.1| (hypothetical protein H310_11242 [Aphanomyces invadans] >gi|574468334|gb|ETV95353.1| hypothetical protein H310_11242 [Aphanomyces invadans])

HSP 1 Score: 269.626 bits (688), Expect = 1.283e-89
Identity = 130/192 (67.71%), Postives = 160/192 (83.33%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN  +LKRL+MS+ N+PP++I+R+ R+MK KE + AV+VGTITDD R+ +VPKL++AAL  T +ARAR+L+AGGEILTFD+LALRAPKG N VLLRG    RE   HFGH ST+ +V+THD+VKPY RSKGRKFEKARGRR S GFKV
Sbjct:    1 MGKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPKLTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRGRKTAREVYRHFGHESTLDSVNTHDHVKPYVRSKGRKFEKARGRRNSRGFKV 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1173952569|gb|OQS00220.1| (60S ribosomal protein L18-2 [Thraustotheca clavata])

HSP 1 Score: 269.24 bits (687), Expect = 1.914e-89
Identity = 129/192 (67.19%), Postives = 160/192 (83.33%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG-PHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            +G D+ +GG+ TG K+RT PKS+NVYL LLV+LYRFLARRTD+ FN V+LKRL+MS+ N+PP++I+R+ R+MK KE K AV+VGTITDD R+ +VPKL++AAL  + +ARAR+L AGGEILTFD+LALRAPKG N VLLRG    RE   HFGH ST+ +VHTHD+VKPY RSKGRKFE+ARGRR+S GFKV
Sbjct:    6 IGKDIVAGGKSTGRKSRTGPKSENVYLNLLVRLYRFLARRTDAKFNEVVLKRLYMSRTNQPPMSIARVARYMKNKEDKIAVVVGTITDDIRLFDVPKLTIAALGFSESARARVLAAGGEILTFDQLALRAPKGANTVLLRGRKTAREVYRHFGHSSTLDSVHTHDHVKPYVRSKGRKFERARGRRKSRGFKV 197          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|698802576|ref|XP_009834317.1| (hypothetical protein H257_09702 [Aphanomyces astaci] >gi|574110694|gb|ETV76192.1| hypothetical protein H257_09702 [Aphanomyces astaci])

HSP 1 Score: 267.314 bits (682), Expect = 1.252e-88
Identity = 130/192 (67.71%), Postives = 158/192 (82.29%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MG D+ +GG+ TG K+RTAPKS+NVYL LLV+LYRFLARRTD+ FN  +LKRL+MS+ N+PP++I+R+ R+M  KE + AV+VGTITDD R+ +VPKL++AAL  T +ARARIL+AGGEILTFD+LALRAPKG N VLLRG    RE   HFGH ST+ +V THD+VKPY RSKGRKFEKARGRR S GFKV
Sbjct:    1 MGKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPLSIARVARYMNKKEDQIAVVVGTITDDIRLFDVPKLTIAALGFTESARARILKAGGEILTFDQLALRAPKGQNTVLLRGRKTAREVYRHFGHESTLDSVKTHDHVKPYVRSKGRKFEKARGRRNSRGFKV 192          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|168067963|ref|XP_001785869.1| (predicted protein [Physcomitrella patens] >gi|162662471|gb|EDQ49322.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 266.544 bits (680), Expect = 1.747e-88
Identity = 138/192 (71.88%), Postives = 158/192 (82.29%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHD-REALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MGIDLK+GGR    K RTAPKSDNVYLKLLVKLYRFL RRTD+ FN+V+LKRLFMS+ NRPPI++SRLV++M GKEGK AVIVGT+TDD R+ EVP L VAAL+ T TARARIL++GGE+LTFD+LALRAP G+NCVLLRGP + REA+ HFG     G   +H   KPY RSKGRKFEKARGRR S GFKV
Sbjct:    1 MGIDLKAGGRNKKTK-RTAPKSDNVYLKLLVKLYRFLVRRTDAPFNSVVLKRLFMSRINRPPISMSRLVKYMTGKEGKIAVIVGTVTDDTRIYEVPALKVAALRFTETARARILKSGGEVLTFDQLALRAPTGSNCVLLRGPKNAREAVKHFG---APGVPQSH--AKPYVRSKGRKFEKARGRRNSRGFKV 186          
BLAST of EWM27599.1 vs. NCBI_GenBank
Match: gi|1072228636|gb|OEU13371.1| (RL18, ribosomal protein 18 60S large ribosomal subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 263.848 bits (673), Expect = 2.332e-87
Identity = 132/192 (68.75%), Postives = 150/192 (78.12%), Query Frame = 0
Query:    1 MGIDLKSGGRRTGHKTRTA-PKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRGPHDREALSHFGHRSTVGNVHTHDNVKPYTRSKGRKFEKARGRRRSTGFKV 191
            MGIDLK+GGRRTGHK+     K+ N Y +LL+KLY+FL+RRTDS F A +LKRL MSK N+PPI ++RL R+M  KE K AVIV  +TDD RMLE PK++V AL  T TAR RI+ AGGE LTFD+LALRAPKG   VLLRGP  REAL+HFGHR TV N HTHD VKPY RS GRKFEKARGRRRS GFKV
Sbjct:    1 MGIDLKAGGRRTGHKSSMKIVKTKNPYNRLLIKLYKFLSRRTDSKFCATVLKRLHMSKVNQPPIGLNRLSRYMTNKESKIAVIVAKVTDDVRMLECPKMTVCALAFTETARKRIVGAGGECLTFDQLALRAPKGNGTVLLRGPKSREALAHFGHRVTVNNPHTHDGVKPYVRSTGRKFEKARGRRRSKGFKV 192          
The following BLAST results are available for this feature:
BLAST of EWM27599.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109866|gb|EWM27599.1|1.485e-135100.00Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
gi|298707282|emb|CBJ25909.1|3.139e-10075.00cytoplasmic ribosomal protein L18 [Ectocarpus sili... [more]
gi|669144346|ref|XP_008607735.1|3.271e-9169.2760S ribosomal protein [Saprolegnia diclina VS20] >... [more]
gi|676387263|ref|XP_009036910.1|1.499e-9070.83hypothetical protein AURANDRAFT_37496 [Aureococcus... [more]
gi|1173952065|gb|OQR99816.1|6.436e-9068.2360S ribosomal protein L18-2 [Achlya hypogyna][more]
gi|673044187|ref|XP_008876054.1|1.283e-8967.71hypothetical protein H310_11242 [Aphanomyces invad... [more]
gi|1173952569|gb|OQS00220.1|1.914e-8967.1960S ribosomal protein L18-2 [Thraustotheca clavata... [more]
gi|698802576|ref|XP_009834317.1|1.252e-8867.71hypothetical protein H257_09702 [Aphanomyces astac... [more]
gi|168067963|ref|XP_001785869.1|1.747e-8871.88predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1072228636|gb|OEU13371.1|2.332e-8768.75RL18, ribosomal protein 18 60S large ribosomal sub... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3114rna3114Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications