EWM27583.1, cds3101 (CDS) Nannochloropsis gaditana

Overview
NameEWM27583.1
Unique Namecds3101
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:733131..733181 -
Alignment locationCM002460.1:732587..733039 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27583.1
Productmitotic spindle-associated mmxd complex subunit mip18
Orig transcript idgnl|cribi|Naga_100015g53.6399.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:733131..733181 -
CM002460.1supercontigCM002460.1:732587..733039 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002744DUF59
Homology
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|585109850|gb|EWM27583.1| (mitotic spindle-associated mmxd complex subunit mip18 [Nannochloropsis gaditana])

HSP 1 Score: 342.813 bits (878), Expect = 2.328e-119
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MKENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETEHSGVDLRQ 167
            MKENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETEHSGVDLRQ
Sbjct:    1 MKENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETEHSGVDLRQ 167          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|695388351|ref|XP_009519157.1| (hypothetical protein PHYSODRAFT_485469 [Phytophthora sojae] >gi|348684054|gb|EGZ23869.1| hypothetical protein PHYSODRAFT_485469 [Phytophthora sojae])

HSP 1 Score: 223.402 bits (568), Expect = 3.981e-72
Identity = 110/158 (69.62%), Postives = 127/158 (80.38%), Query Frame = 0
Query:    2 KENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV       P    V+   DEDA D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD+ S I I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG HASEAAVNKQLNDKERVAAALENAHLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPA---PKKFDVDEALDEDAADPFESDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDANSRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHASEAAVNKQLNDKERVAAALENAHLLTVVNKCIANTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|675166067|ref|XP_008891918.1| (hypothetical protein PPTG_02548 [Phytophthora parasitica INRA-310] >gi|566026956|gb|ETI49867.1| hypothetical protein F443_06436 [Phytophthora parasitica P1569] >gi|568022251|gb|ETL96328.1| hypothetical protein L917_06127 [Phytophthora parasitica] >gi|568108062|gb|ETN22686.1| hypothetical protein PPTG_02548 [Phytophthora parasitica INRA-310])

HSP 1 Score: 220.32 bits (560), Expect = 6.291e-71
Identity = 109/161 (67.70%), Postives = 129/161 (80.12%), Query Frame = 0
Query:    2 KENANPTIYAVE---RKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    RK+ D      V+   DED  D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD+ S I I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPARKKFD------VDEALDEDVADPFDSDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDANSRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|970633881|gb|KUF79349.1| (MIP18 family protein [Phytophthora nicotianae])

HSP 1 Score: 220.32 bits (560), Expect = 1.056e-70
Identity = 109/161 (67.70%), Postives = 129/161 (80.12%), Query Frame = 0
Query:    2 KENANPTIYAVE---RKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    RK+ D      V+   DED  D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD+ S I I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:   30 KINANPTVYAVATPARKKFD------VDEALDEDVADPFDSDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDANSRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 184          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|567964265|gb|ETK89755.1| (hypothetical protein L915_06320 [Phytophthora parasitica] >gi|567992958|gb|ETL43145.1| hypothetical protein L916_06257 [Phytophthora parasitica] >gi|568052620|gb|ETM49493.1| hypothetical protein L914_06249 [Phytophthora parasitica] >gi|570954376|gb|ETP19633.1| hypothetical protein F441_06443 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 219.55 bits (558), Expect = 1.296e-70
Identity = 109/161 (67.70%), Postives = 128/161 (79.50%), Query Frame = 0
Query:    2 KENANPTIYAVE---RKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    RK+ D      V+   DED  D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD  S I I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPARKKFD------VDEALDEDVADPFDSDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDPNSRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|570330662|gb|ETO78610.1| (hypothetical protein F444_06498 [Phytophthora parasitica P1976])

HSP 1 Score: 218.779 bits (556), Expect = 2.420e-70
Identity = 109/161 (67.70%), Postives = 128/161 (79.50%), Query Frame = 0
Query:    2 KENANPTIYAVE---RKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    RK+ D      V    DED  D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD+ S I I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPARKKFD------VVEALDEDVADPFDSDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDANSRIKIYFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|1214712408|gb|OWZ23353.1| (hypothetical protein PHMEG_0001799 [Phytophthora megakarya])

HSP 1 Score: 218.394 bits (555), Expect = 2.820e-70
Identity = 108/161 (67.08%), Postives = 129/161 (80.12%), Query Frame = 0
Query:    2 KENANPTIYAVE---RKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    RK+ D      V+   DED  D F ++EVFE++R++NDPEHPLTLEQLKV +LEN+ VDD+ S I + FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPARKKFD------VDEALDEDVADPFESDEVFEILRHINDPEHPLTLEQLKVMSLENIHVDDANSRIKVFFTPTIPHCSMATLIGLCLRVKLLRSLPPRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIANTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|669163128|ref|XP_008617126.1| (hypothetical protein SDRG_12823 [Saprolegnia diclina VS20] >gi|813111302|ref|XP_012195162.1| hypothetical protein SPRG_01566 [Saprolegnia parasitica CBS 223.65] >gi|530731117|gb|EQC29359.1| hypothetical protein SDRG_12823 [Saprolegnia diclina VS20] >gi|641540649|gb|KDO34431.1| hypothetical protein SPRG_01566 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 218.394 bits (555), Expect = 3.179e-70
Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 0
Query:    2 KENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K+NANPT+YA   +RR       VE   DE++ D F A EVFE++R+LNDPEHPLTLEQLKV TL+N+ VD++ S + ++FTPTIPHCSMATLIGLCIRVKLLRSLP+RFKV + ++PG H +E A+NKQLNDKERVAAALENAHLL VVNKC+  T+
Sbjct:    6 KQNANPTVYASATERR-------VEKVTDEESADPFDALEVFEILRHLNDPEHPLTLEQLKVMTLDNILVDNATSRVKVQFTPTIPHCSMATLIGLCIRVKLLRSLPKRFKVDIRITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKCIANTD 156          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|301114537|ref|XP_002999038.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111132|gb|EEY69184.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 218.394 bits (555), Expect = 3.550e-70
Identity = 107/158 (67.72%), Postives = 125/158 (79.11%), Query Frame = 0
Query:    2 KENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K NANPT+YAV    R      +V+   DED  D F  +EVFE++R++NDPEHPLTLEQLKV +LENV VDD  S + I FTPTIPHCSMATLIGLC+RVKLLRSLP RFKV + ++PG H+SEAAVNKQLNDKERVAAALEN+HLL VVNKC+  T+
Sbjct:    6 KINANPTVYAVATPARK---KFNVDETLDEDVADPFEPDEVFEILRHINDPEHPLTLEQLKVMSLENVHVDDVNSRVKIFFTPTIPHCSMATLIGLCLRVKLLRSLPSRFKVDILITPGTHSSEAAVNKQLNDKERVAAALENSHLLTVVNKCIAHTD 160          
BLAST of EWM27583.1 vs. NCBI_GenBank
Match: gi|1173934841|gb|OQR86061.1| (hypothetical protein ACHHYP_11042 [Achlya hypogyna])

HSP 1 Score: 218.009 bits (554), Expect = 3.873e-70
Identity = 106/158 (67.09%), Postives = 126/158 (79.75%), Query Frame = 0
Query:    2 KENANPTIYAVERKRRDHPISSHVETNWDEDARDAFTAEEVFELIRNLNDPEHPLTLEQLKVATLENVRVDDSRSTISIRFTPTIPHCSMATLIGLCIRVKLLRSLPQRFKVRVEVSPGAHASEAAVNKQLNDKERVAAALENAHLLGVVNKCLEETE 159
            K+NANPT+YAV    R       VE   D++  D F A EVFE++R+LNDPEHPLTLEQLKV TLEN+ VDD+ S + ++FTPTIPHCSMATLIGLCIRVKLLRSLP+RFKV + ++PG H +E A+NKQLNDKERVAAALENAHLL VVNKC+  T+
Sbjct:    6 KQNANPTVYAVGAVER------RVEKVTDDETTDPFDALEVFEVLRHLNDPEHPLTLEQLKVMTLENIYVDDAASRVKVQFTPTIPHCSMATLIGLCIRVKLLRSLPKRFKVDIRITPGTHITEDAINKQLNDKERVAAALENAHLLNVVNKCIANTD 157          
The following BLAST results are available for this feature:
BLAST of EWM27583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109850|gb|EWM27583.1|2.328e-119100.00mitotic spindle-associated mmxd complex subunit mi... [more]
gi|695388351|ref|XP_009519157.1|3.981e-7269.62hypothetical protein PHYSODRAFT_485469 [Phytophtho... [more]
gi|675166067|ref|XP_008891918.1|6.291e-7167.70hypothetical protein PPTG_02548 [Phytophthora para... [more]
gi|970633881|gb|KUF79349.1|1.056e-7067.70MIP18 family protein [Phytophthora nicotianae][more]
gi|567964265|gb|ETK89755.1|1.296e-7067.70hypothetical protein L915_06320 [Phytophthora para... [more]
gi|570330662|gb|ETO78610.1|2.420e-7067.70hypothetical protein F444_06498 [Phytophthora para... [more]
gi|1214712408|gb|OWZ23353.1|2.820e-7067.08hypothetical protein PHMEG_0001799 [Phytophthora m... [more]
gi|669163128|ref|XP_008617126.1|3.179e-7066.46hypothetical protein SDRG_12823 [Saprolegnia dicli... [more]
gi|301114537|ref|XP_002999038.1|3.550e-7067.72conserved hypothetical protein [Phytophthora infes... [more]
gi|1173934841|gb|OQR86061.1|3.873e-7067.09hypothetical protein ACHHYP_11042 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3109rna3109Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications