EWM27546.1, cds3100 (CDS) Nannochloropsis gaditana

Overview
NameEWM27546.1
Unique Namecds3100
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:730785..731048 +
Alignment locationCM002460.1:731208..732248 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27546.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g54.6362.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:730785..731048 +
CM002460.1supercontigCM002460.1:731208..732248 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM27546.1 vs. NCBI_GenBank
Match: gi|585109813|gb|EWM27546.1| (hypothetical protein Naga_100015g54 [Nannochloropsis gaditana])

HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0 
Query:    1 MVDEQPPAPRAPLSSSAASSSPGPQILPPPPPSPSFARSRDATRIHNPVRTHSFSIQRTIPDKMAGDPSKHQKEMHQQQAFWGNLRIEIEPPYQGKPPEWHTEQSDSTSIPAYLSESPSETDLSQIEGGDEAFPSRGPEPPAVRMVTTCISSALLATGGAQSSLQIAMFIQLHFISSWWSGAFSALIGAVGLSSRWECPRMAFRILTFVGVLLNAVAAVIDARIAHVLRGSEVFCGPPSKATGGASSVSLQDWCALEPEDLAVLSCACIIPGESPGSSKACLAFHGRAPEAGSQCYASASLLQRFLSASTGLCWALATICLCAYLFRLALTCRYCLILVLSRSSSFRLVPKRWRAKSAKSADRKVVAGSETGAEGKKREDPNHPQITYEKMEEGERAPPRAAGRDGGNLARHGSRGQRDVRDAYYLRDAPMPCR 434
            MVDEQPPAPRAPLSSSAASSSPGPQILPPPPPSPSFARSRDATRIHNPVRTHSFSIQRTIPDKMAGDPSKHQKEMHQQQAFWGNLRIEIEPPYQGKPPEWHTEQSDSTSIPAYLSESPSETDLSQIEGGDEAFPSRGPEPPAVRMVTTCISSALLATGGAQSSLQIAMFIQLHFISSWWSGAFSALIGAVGLSSRWECPRMAFRILTFVGVLLNAVAAVIDARIAHVLRGSEVFCGPPSKATGGASSVSLQDWCALEPEDLAVLSCACIIPGESPGSSKACLAFHGRAPEAGSQCYASASLLQRFLSASTGLCWALATICLCAYLFRLALTCRYCLILVLSRSSSFRLVPKRWRAKSAKSADRKVVAGSETGAEGKKREDPNHPQITYEKMEEGERAPPRAAGRDGGNLARHGSRGQRDVRDAYYLRDAPMPCR
Sbjct:    1 MVDEQPPAPRAPLSSSAASSSPGPQILPPPPPSPSFARSRDATRIHNPVRTHSFSIQRTIPDKMAGDPSKHQKEMHQQQAFWGNLRIEIEPPYQGKPPEWHTEQSDSTSIPAYLSESPSETDLSQIEGGDEAFPSRGPEPPAVRMVTTCISSALLATGGAQSSLQIAMFIQLHFISSWWSGAFSALIGAVGLSSRWECPRMAFRILTFVGVLLNAVAAVIDARIAHVLRGSEVFCGPPSKATGGASSVSLQDWCALEPEDLAVLSCACIIPGESPGSSKACLAFHGRAPEAGSQCYASASLLQRFLSASTGLCWALATICLCAYLFRLALTCRYCLILVLSRSSSFRLVPKRWRAKSAKSADRKVVAGSETGAEGKKREDPNHPQITYEKMEEGERAPPRAAGRDGGNLARHGSRGQRDVRDAYYLRDAPMPCR 434
The following BLAST results are available for this feature:
BLAST of EWM27546.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109813|gb|EWM27546.1|0.000e+0100.00hypothetical protein Naga_100015g54 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3108rna3108Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications