EWM27613.1, cds3073 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|585109881|gb|EWM27613.1| (hypothetical protein Naga_100069g21 [Nannochloropsis gaditana]) HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0 Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0 Query: 1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH 400 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH Sbjct: 1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTRVSVEDDGSPVGFEMDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWEAAHLARMEKVISLPNPPVKTAPKPHLTSSVSSGPRLGLEHASIPPPRTPLSFGRRQGPGKAGGHGKGCGRRGACPGEGGRRKPCMTWTPSSRKTMLSCQGQTRRVKAGGGGRLADWERRLAGAGPGGRWEEGASH 400
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|1210514249|dbj|GAX27031.1| (hypothetical protein FisN_9Lh347 [Fistulifera solaris]) HSP 1 Score: 83.1889 bits (204), Expect = 5.246e-14 Identity = 72/290 (24.83%), Postives = 122/290 (42.07%), Query Frame = 0 Query: 1 MAEGGLLPWRRQRHDGTKYQDFEEMLKPLPPPPEGLMWRKTR-------VSVEDDGSPVGFE----------MDLGFPVEGEGKIAAGHRVGNNAADHDRGKNAEVVEVLDGAQGQGVRTRYATRWE----LVEKTMKAKVADAEEGG--GADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIPLKRDSA-GHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAWE 265 M+EGG PW+ QRH D+ + PLP PP G+ W + V+ +DD + E + E E ++ +G ++++ A V L +G + + +++ +++T+ + D+ + G G G + LG D VE HV+LPTDT+ G+ L YK+ + LR N F G + + L IP+ + + ++ + + + A E + YL+ ADW LE A+ +EDR WE Sbjct: 1 MSEGGFFPWKVQRHVTKPSADYSRLSSPLPSPPNGMKWHQNTETREWKLVAQKDDIPELITEERAVDNLPSTLPQKVDDESEWEVLSGE--NPSSSESYAAPKAGSVRSLASFEGGDIASHLSSQLSHTSFKIQRTLSSSTIDSTDPGILGPSG----------KGILGVDYVE---------HVILPTDTLQGICLAYKINSTRLRQANHFSGHSLLLAPKKLVIPISQKALRSGFIRVQDTDAKQYKLHALLAAYPDLSASEASAYLELADWVLEDALQTAKEDREWE 269
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|954194224|gb|KRX06960.1| (hypothetical protein PPERSA_07123 [Pseudocohnilembus persalinus]) HSP 1 Score: 71.2478 bits (173), Expect = 3.732e-10 Identity = 36/115 (31.30%), Postives = 65/115 (56.52%), Query Frame = 0 Query: 158 FLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPLKRDSAGHVLKHRQRPTRAVLRQQFINATR--CTDEEEIT-----YYLDAADWRLEAAVAEHREDRAWE 265 ++ H +LP+DT+ GL +RY V+ +++MFND GE+ +TL IP + +V+ + V++QQ I+ + DE++ + +YL+ +W ++ A +RED WE Sbjct: 193 YIVHKILPSDTLIGLSIRYDVSEHKIKMFNDLDGEEIWFKKTLNIP---NPQTNVVGDSNQDLEEVIKQQQISQFKFHVLDEKDKSEKMAKFYLEDHNWDIQMAAKAYREDVEWE 304
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|223994547|ref|XP_002286957.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978272|gb|EED96598.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 70.8626 bits (172), Expect = 1.089e-9 Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 0 Query: 153 ATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIP--LKRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITYYLDAADWRLEAAVAEHREDRAW 264 +T ++ HVVLPTDT+ G+ L YK++A LRM N F G M + L+IP +K + G +++ + R ++ + + E YLD ++W LE A+ RED W Sbjct: 294 STGDPYIEHVVLPTDTLQGICLAYKISATRLRMENGFSGNCLQMAPKKLKIPTNIKTYTKGMMIRTQDRTSKEFKLYALVAEVPSMELVEAKAYLDLSNWDLEEALRSAREDDGW 408
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|397642652|gb|EJK75366.1| (hypothetical protein THAOC_02910 [Thalassiosira oceanica]) HSP 1 Score: 65.855 bits (159), Expect = 3.108e-8 Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 0 Query: 157 AFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHMLQTLQIPL-KRDSAGHVLKHRQRPTRAVLRQQFINATRCTDEEEITY-----YLDAADWRLEAAVAEHREDRA 263 + L H V PTDT G+ LRYKVT ELR N +++ L IPL +RD + Q PTR + + TR + +T+ YL+ DW ++AAV RED A Sbjct: 228 SVLYHEVRPTDTFQGICLRYKVTPTELRRANRLLSNNLSLVEKLAIPLNQRDERAAIT---QIPTREEIVADLV--TRVSASATLTHTEARAYLELNDWNMDAAVENIREDFA 335
BLAST of EWM27613.1 vs. NCBI_GenBank
Match: gi|224006165|ref|XP_002292043.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972562|gb|EED90894.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 62.3882 bits (150), Expect = 8.109e-8 Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 0 Query: 108 RWELVEKTMKAKVADAEEGGGADGGENAVGQEMEEAGLGEDEVEGATAPAFLTHVVLPTDTMAGLRLRYKVTAAELRMFNDFCGEQFHML-QTLQIPLKRDSAGHVLKHRQRPTRAVLRQQ----FINATRCTDE-------EEITYYLDAADWRLEAAVAEHREDRAWEAA 267 RWE E T + K+ + D G A Q +E V ++ + + H VLPTDT G+ LRYKVTA +LR N G + L IP+K G V K Q+ T+ + +Q ++AT +E E YL+ D L A+A +ED W ++ Sbjct: 32 RWEHNETTKEWKLVPS----IVDDGPEAKVQAADEG------VPVTSSSSCIYHKVLPTDTFQGICLRYKVTATDLRRANKMMGTNLKLAPSNLLIPIK----GGVSKLDQKQTKELTTEQKIAAILSATSTREEGTKKMGYSEARAYLELNDGDLNGAIANAKEDLGWSSS 189 The following BLAST results are available for this feature:
BLAST of EWM27613.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|