EWM27619.1, cds3060 (CDS) Nannochloropsis gaditana

Overview
NameEWM27619.1
Unique Namecds3060
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:630695..631312 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27619.1
ProductNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Orig transcript idgnl|cribi|Naga_100069g7.5338.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:630695..631312 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007523NADH_Ub_cplx-1_asu_assmbl-fac3
Homology
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|585109887|gb|EWM27619.1| (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 422.55 bits (1085), Expect = 1.253e-149
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205
            MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES
Sbjct:    1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|553195087|ref|XP_005856081.1| (nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526] >gi|422292975|gb|EKU20276.1| nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.165 bits (1084), Expect = 2.211e-149
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205
            MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES
Sbjct:    7 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 211          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|298710169|emb|CBJ31879.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 121.709 bits (304), Expect = 6.111e-31
Identity = 65/143 (45.45%), Postives = 96/143 (67.13%), Query Frame = 0
Query:   62 LGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRD-VNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEES 203
            LGKG D++    ++   R++  + GYD  GF++ D V+ RGS++ +P +  LW+PK+  +IT ESL  + +V P I+++I+G GE +  R L    +K LA+ G+ VE MDT +ACSTFN+LN EDRRVAAALL + +  EES
Sbjct:   71 LGKGFDLM---EDDPDSRKKVVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWQPKRPSDITVESLRMVELVIPKIDLIIVGVGERMTAR-LDPVLVKHLASKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQL-SPEEES 208          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|813111134|ref|XP_012195109.1| (hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65] >gi|641540591|gb|KDO34373.1| hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 116.701 bits (291), Expect = 9.608e-30
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   63 GKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
            G G+  L  G+    E   G  +  +  YD  GF V DVN RGS+  LP    +WKP+ ++EIT ESL    +  P IEIL++G G+  + + L  + +++L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L 
Sbjct:   16 GMGVRWLQYGHDMHKEMMTGTSKVSISEYDDGGFVVNDVNMRGSVALLPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKR-IAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAILV 151          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|695389619|ref|XP_009519487.1| (hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae] >gi|348684384|gb|EGZ24199.1| hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae])

HSP 1 Score: 115.931 bits (289), Expect = 1.402e-29
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
            G  +  +  YD  GF + DVN RG +        LWKPK++EEIT E L    I  P IEIL++G GE  +   LA    + L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:    8 GTAKVSITEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTIANPPIEILVLGCGER-INHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPNA 129          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|1173935081|gb|OQR86263.1| (hypothetical protein ACHHYP_10791 [Achlya hypogyna])

HSP 1 Score: 115.931 bits (289), Expect = 2.225e-29
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 0
Query:   52 RRQQSRAFSDLGKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
            RR  +R     G  +  L  G+    E   G  +  +  YD  GF V DVN RGSI  LP+   +WKP  +EEIT ESL    +  P IEIL++G G+  + R L    +++L ++G+ VE++D+ +AC+TFNILN EDR+VAAA+L 
Sbjct:    3 RRVVARGAFRSGMSVRWLQYGHDMHKEMMTGTSKVSIAEYDDGGFVVNDVNMRGSIALLPSIAMMWKPNTMEEITVESLNIFTVANPPIEILVLGCGKR-IARQLDPKLVEYLKSHGIVVEYLDSFNACATFNILNAEDRKVAAAILV 149          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|1214680472|gb|OWY99676.1| (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 114.775 bits (286), Expect = 2.965e-29
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0
Query:   78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
            G  +  +  YD  GF + DVN RG ++       LWKP +IEEIT E LA   +  P IEIL++G GE  +   LA    + L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:    4 GTAKVSVTEYDEGGFVINDVNMRGGVVLFSEIAMLWKPTRIEEITREHLAVFTVSNPPIEILVLGCGER-INHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 125          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|669163220|ref|XP_008617172.1| (hypothetical protein SDRG_12868 [Saprolegnia diclina VS20] >gi|530731163|gb|EQC29405.1| hypothetical protein SDRG_12868 [Saprolegnia diclina VS20])

HSP 1 Score: 115.546 bits (288), Expect = 3.151e-29
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   63 GKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
            G G+  L  G+    E   G  +  +  YD  GF V DVN RGS+  +P    +WKP+ ++EIT ESL    +  P IEIL++G G+  + + L  + +++L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L 
Sbjct:   16 GVGVRWLQYGHDMHKEMMTGTAKVSISEYDDGGFVVNDVNMRGSVALMPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKR-IAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAILV 151          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|675202703|ref|XP_008910236.1| (hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310] >gi|568012554|gb|ETL86732.1| hypothetical protein L917_13882 [Phytophthora parasitica] >gi|568042591|gb|ETM39916.1| hypothetical protein L914_14001 [Phytophthora parasitica] >gi|568089467|gb|ETN04309.1| hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310])

HSP 1 Score: 115.161 bits (287), Expect = 8.697e-29
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 0
Query:   78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
            G  +  +  YD  GF + DVN RG +        LWKPK+IEEIT + LA   +  P +EIL++G GE  +   LA    + L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   54 GTAKVSVTEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRIEEITRDHLAVFTVANPPVEILVLGCGER-INHGLAPELKELLKTNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 175          
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|301096601|ref|XP_002897397.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107088|gb|EEY65140.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 114.005 bits (284), Expect = 1.632e-28
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
            G  +  +  YD  GF V DVN RG +        LWKPK++EEIT E L    +  P +EIL++G GE  +   LA    + +  NG+ +E++DT +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   40 GTAKVSVTEYDEGGFVVNDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTVANPPVEILVLGCGER-INHGLAPELKELMKVNGIVIEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 161          
The following BLAST results are available for this feature:
BLAST of EWM27619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109887|gb|EWM27619.1|1.253e-149100.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
gi|553195087|ref|XP_005856081.1|2.211e-149100.00nadh dehydrogenase, partial [Nannochloropsis gadit... [more]
gi|298710169|emb|CBJ31879.1|6.111e-3145.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|813111134|ref|XP_012195109.1|9.608e-3042.34hypothetical protein SPRG_01509 [Saprolegnia paras... [more]
gi|695389619|ref|XP_009519487.1|1.402e-2947.97hypothetical protein PHYSODRAFT_353930 [Phytophtho... [more]
gi|1173935081|gb|OQR86263.1|2.225e-2941.89hypothetical protein ACHHYP_10791 [Achlya hypogyna... [more]
gi|1214680472|gb|OWY99676.1|2.965e-2947.97putative mitochondrial protein [Phytophthora megak... [more]
gi|669163220|ref|XP_008617172.1|3.151e-2941.61hypothetical protein SDRG_12868 [Saprolegnia dicli... [more]
gi|675202703|ref|XP_008910236.1|8.697e-2947.15hypothetical protein PPTG_15000 [Phytophthora para... [more]
gi|301096601|ref|XP_002897397.1|1.632e-2845.53conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3068rna3068Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications