EWM27619.1, cds3060 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|585109887|gb|EWM27619.1| (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Nannochloropsis gaditana]) HSP 1 Score: 422.55 bits (1085), Expect = 1.253e-149 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205
MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES
Sbjct: 1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|553195087|ref|XP_005856081.1| (nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526] >gi|422292975|gb|EKU20276.1| nadh dehydrogenase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 422.165 bits (1084), Expect = 2.211e-149 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 205
MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES
Sbjct: 7 MIRRALRRTTFVRLSSEAATSTCPERNYPPVDLFHPPYAPALWDQKHQQNHRRQQSRAFSDLGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEESES 211
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|298710169|emb|CBJ31879.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 121.709 bits (304), Expect = 6.111e-31 Identity = 65/143 (45.45%), Postives = 96/143 (67.13%), Query Frame = 0
Query: 62 LGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRD-VNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAEES 203
LGKG D++ ++ R++ + GYD GF++ D V+ RGS++ +P + LW+PK+ +IT ESL + +V P I+++I+G GE + R L +K LA+ G+ VE MDT +ACSTFN+LN EDRRVAAALL + + EES
Sbjct: 71 LGKGFDLM---EDDPDSRKKVVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWQPKRPSDITVESLRMVELVIPKIDLIIVGVGERMTAR-LDPVLVKHLASKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQL-SPEEES 208
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|813111134|ref|XP_012195109.1| (hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65] >gi|641540591|gb|KDO34373.1| hypothetical protein SPRG_01509 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 116.701 bits (291), Expect = 9.608e-30 Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 0
Query: 63 GKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
G G+ L G+ E G + + YD GF V DVN RGS+ LP +WKP+ ++EIT ESL + P IEIL++G G+ + + L + +++L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct: 16 GMGVRWLQYGHDMHKEMMTGTSKVSISEYDDGGFVVNDVNMRGSVALLPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKR-IAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAILV 151
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|695389619|ref|XP_009519487.1| (hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae] >gi|348684384|gb|EGZ24199.1| hypothetical protein PHYSODRAFT_353930 [Phytophthora sojae]) HSP 1 Score: 115.931 bits (289), Expect = 1.402e-29 Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
G + + YD GF + DVN RG + LWKPK++EEIT E L I P IEIL++G GE + LA + L NG+ VE++DT +AC+TFNILN EDRRVAAALL D A
Sbjct: 8 GTAKVSITEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTIANPPIEILVLGCGER-INHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPNA 129
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|1173935081|gb|OQR86263.1| (hypothetical protein ACHHYP_10791 [Achlya hypogyna]) HSP 1 Score: 115.931 bits (289), Expect = 2.225e-29 Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 0
Query: 52 RRQQSRAFSDLGKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
RR +R G + L G+ E G + + YD GF V DVN RGSI LP+ +WKP +EEIT ESL + P IEIL++G G+ + R L +++L ++G+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct: 3 RRVVARGAFRSGMSVRWLQYGHDMHKEMMTGTSKVSIAEYDDGGFVVNDVNMRGSIALLPSIAMMWKPNTMEEITVESLNIFTVANPPIEILVLGCGKR-IARQLDPKLVEYLKSHGIVVEYLDSFNACATFNILNAEDRKVAAAILV 149
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|1214680472|gb|OWY99676.1| (putative mitochondrial protein [Phytophthora megakarya]) HSP 1 Score: 114.775 bits (286), Expect = 2.965e-29 Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
G + + YD GF + DVN RG ++ LWKP +IEEIT E LA + P IEIL++G GE + LA + L NG+ VE++DT +AC+TFNILN EDRRVAAALL D A
Sbjct: 4 GTAKVSVTEYDEGGFVINDVNMRGGVVLFSEIAMLWKPTRIEEITREHLAVFTVSNPPIEILVLGCGER-INHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 125
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|669163220|ref|XP_008617172.1| (hypothetical protein SDRG_12868 [Saprolegnia diclina VS20] >gi|530731163|gb|EQC29405.1| hypothetical protein SDRG_12868 [Saprolegnia diclina VS20]) HSP 1 Score: 115.546 bits (288), Expect = 3.151e-29 Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 0
Query: 63 GKGIDVLAVGN----EEEAGRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLA 195
G G+ L G+ E G + + YD GF V DVN RGS+ +P +WKP+ ++EIT ESL + P IEIL++G G+ + + L + +++L +NG+ VE++D+ +AC+TFNILN EDR+VAAA+L
Sbjct: 16 GVGVRWLQYGHDMHKEMMTGTAKVSISEYDDGGFVVNDVNMRGSVALMPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKR-IAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAILV 151
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|675202703|ref|XP_008910236.1| (hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310] >gi|568012554|gb|ETL86732.1| hypothetical protein L917_13882 [Phytophthora parasitica] >gi|568042591|gb|ETM39916.1| hypothetical protein L914_14001 [Phytophthora parasitica] >gi|568089467|gb|ETN04309.1| hypothetical protein PPTG_15000 [Phytophthora parasitica INRA-310]) HSP 1 Score: 115.161 bits (287), Expect = 8.697e-29 Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
G + + YD GF + DVN RG + LWKPK+IEEIT + LA + P +EIL++G GE + LA + L NG+ VE++DT +AC+TFNILN EDRRVAAALL D A
Sbjct: 54 GTAKVSVTEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRIEEITRDHLAVFTVANPPVEILVLGCGER-INHGLAPELKELLKTNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 175
BLAST of EWM27619.1 vs. NCBI_GenBank
Match: gi|301096601|ref|XP_002897397.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107088|gb|EEY65140.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 114.005 bits (284), Expect = 1.632e-28 Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 78 GRERTFLLGYDGQGFEVRDVNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAA 200
G + + YD GF V DVN RG + LWKPK++EEIT E L + P +EIL++G GE + LA + + NG+ +E++DT +AC+TFNILN EDRRVAAALL D A
Sbjct: 40 GTAKVSVTEYDEGGFVVNDVNMRGGVALFSEIAMLWKPKRVEEITREHLTVFTVANPPVEILVLGCGER-INHGLAPELKELMKVNGIVIEYLDTVNACATFNILNAEDRRVAAALLPYDPDA 161 The following BLAST results are available for this feature:
BLAST of EWM27619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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