EWM27637.1, cds3029 (CDS) Nannochloropsis gaditana

Overview
NameEWM27637.1
Unique Namecds3029
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:541140..541239 -
Alignment locationCM002460.1:539938..540007 -
Alignment locationCM002460.1:539465..539678 -
Alignment locationCM002460.1:539291..539421 -
Alignment locationCM002460.1:539145..539247 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27637.1
Product40s ribosomal protein s26
Orig transcript idgnl|cribi|Naga_100059g16.8042.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:541140..541239 -
CM002460.1supercontigCM002460.1:539938..540007 -
CM002460.1supercontigCM002460.1:539465..539678 -
CM002460.1supercontigCM002460.1:539291..539421 -
CM002460.1supercontigCM002460.1:539145..539247 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_S26e
Homology
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|585109907|gb|EWM27637.1| (40s ribosomal protein s26 [Nannochloropsis gaditana])

HSP 1 Score: 424.091 bits (1089), Expect = 2.818e-150
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD 205
            MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD
Sbjct:    1 MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD 205          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|299117248|emb|CBN75210.1| (40S ribosomal protein S26 [Ectocarpus siliculosus])

HSP 1 Score: 156.762 bits (395), Expect = 4.201e-46
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNKKGRGHV RVRCAST KA+PKDKAIKR +VR+IVD SS RDI+EA VF+NY LPKLYIKQYY VEAAVHQR+VRSRS E RR
Sbjct:    1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRR 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|397572200|gb|EJK48154.1| (hypothetical protein THAOC_33075 [Thalassiosira oceanica])

HSP 1 Score: 159.458 bits (402), Expect = 2.796e-45
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 0
Query:   26 VVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRF 129
            +VSFI     MTVKRRNHGRNK GRGHVKRVRCASTGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K YY VEAAVHQR+VR RS+ DRR 
Sbjct:  133 LVSFI-----MTVKRRNHGRNKHGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRTDRRI 231          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|219127204|ref|XP_002183830.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404553|gb|EEC44499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 153.295 bits (386), Expect = 9.867e-45
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRF 129
            MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K YY VEAAVHQR+VR RS+E+RR 
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRENRRI 94          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|676388145|ref|XP_009037351.1| (hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens] >gi|323452110|gb|EGB07985.1| hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens])

HSP 1 Score: 152.525 bits (384), Expect = 2.260e-44
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRR+HGRNKKGRGHV RVRCASTGKA+PKDKAIKR +VR+IVD SS RDI++A  +E Y LPK+YIKQYY +EAAVHQR+VRSRS+ DRR
Sbjct:    1 MTVKRRSHGRNKKGRGHVNRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAYETYALPKIYIKQYYCIEAAVHQRIVRSRSRTDRR 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1072226038|gb|OEU10782.1| (ribosomal protein S26e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.369 bits (381), Expect = 7.012e-44
Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIKEA  ++ YQLPKLY+K +Y VEAAVHQR+VR RSKE RR
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMFYCVEAAVHQRVVRGRSKEGRR 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1210511981|dbj|GAX28836.1| (small subunit ribosomal protein S26e [Fistulifera solaris] >gi|1210517288|dbj|GAX23923.1| small subunit ribosomal protein S26e [Fistulifera solaris])

HSP 1 Score: 150.599 bits (379), Expect = 1.109e-43
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIK+A  ++ YQLPKLY+K YY VEAAVHQR+VR RS+E RR
Sbjct:    1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKDASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSREQRR 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|953495474|emb|CEG42370.1| (40s ribosomal protein s26 [Plasmopara halstedii])

HSP 1 Score: 146.362 bits (368), Expect = 5.649e-42
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR+IVDQS+ RD+KEA V+E+Y LPK+YIK YY VEAA+HQR+VR RS E R+
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNIVDQSAIRDLKEASVYESYALPKIYIKNYYCVEAAIHQRIVRGRSIEARK 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|675196337|ref|XP_008907053.1| (hypothetical protein PPTG_13080 [Phytophthora parasitica INRA-310] >gi|566021320|gb|ETI44231.1| hypothetical protein F443_11078 [Phytophthora parasitica P1569] >gi|567958622|gb|ETK84209.1| hypothetical protein L915_10800 [Phytophthora parasitica] >gi|567987373|gb|ETL37679.1| hypothetical protein L916_10691 [Phytophthora parasitica] >gi|568016656|gb|ETL90833.1| hypothetical protein L917_10590 [Phytophthora parasitica] >gi|568046987|gb|ETM44088.1| hypothetical protein L914_10640 [Phytophthora parasitica] >gi|568092967|gb|ETN07768.1| hypothetical protein PPTG_13080 [Phytophthora parasitica INRA-310] >gi|570324934|gb|ETO72882.1| hypothetical protein F444_11153 [Phytophthora parasitica P1976] >gi|570948798|gb|ETP14055.1| hypothetical protein F441_10991 [Phytophthora parasitica CJ01A1] >gi|570981755|gb|ETP42105.1| hypothetical protein F442_10980 [Phytophthora parasitica P10297] >gi|970645669|gb|KUF86077.1| 40S ribosomal protein S26 [Phytophthora nicotianae] >gi|1214684676|gb|OWZ02044.1| 40S ribosomal protein S26 [Phytophthora megakarya])

HSP 1 Score: 146.362 bits (368), Expect = 6.438e-42
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR+IVDQS+ RD+KEA V+E+Y LPK+YIK YY VEAA+HQR+VR RS E R+
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNIVDQSAIRDLKEASVYESYALPKIYIKNYYCVEAAIHQRIVRGRSIEARK 93          
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1173960659|gb|OQS06765.1| (40S ribosomal protein S26 [Thraustotheca clavata])

HSP 1 Score: 145.976 bits (367), Expect = 8.111e-42
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 0
Query:   36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
            MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR++VD S+ RD+KEA V+E+Y LPK+YIK YYS+EAA+HQR+VR RS E RR
Sbjct:    1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVEGRR 93          
The following BLAST results are available for this feature:
BLAST of EWM27637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109907|gb|EWM27637.1|2.818e-150100.0040s ribosomal protein s26 [Nannochloropsis gaditan... [more]
gi|299117248|emb|CBN75210.1|4.201e-4682.8040S ribosomal protein S26 [Ectocarpus siliculosus][more]
gi|397572200|gb|EJK48154.1|2.796e-4575.00hypothetical protein THAOC_33075 [Thalassiosira oc... [more]
gi|219127204|ref|XP_002183830.1|9.867e-4577.66predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676388145|ref|XP_009037351.1|2.260e-4477.42hypothetical protein AURANDRAFT_26663 [Aureococcus... [more]
gi|1072226038|gb|OEU10782.1|7.012e-4478.49ribosomal protein S26e [Fragilariopsis cylindrus C... [more]
gi|1210511981|dbj|GAX28836.1|1.109e-4377.42small subunit ribosomal protein S26e [Fistulifera ... [more]
gi|953495474|emb|CEG42370.1|5.649e-4275.2740s ribosomal protein s26 [Plasmopara halstedii][more]
gi|675196337|ref|XP_008907053.1|6.438e-4275.27hypothetical protein PPTG_13080 [Phytophthora para... [more]
gi|1173960659|gb|OQS06765.1|8.111e-4274.1940S ribosomal protein S26 [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3037rna3037Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications