EWM27637.1, cds3029 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|585109907|gb|EWM27637.1| (40s ribosomal protein s26 [Nannochloropsis gaditana]) HSP 1 Score: 424.091 bits (1089), Expect = 2.818e-150 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD 205
MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD
Sbjct: 1 MEGQSTGVVDCLCTCRGVTQEIKREVVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRFAGRVCEQQELDAYCRALRNSDSTFPCKAAVFSSHPAGSRRKMCERQETSGLSWLVTHSLVSEAAAGACPVHPMGAD 205
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|299117248|emb|CBN75210.1| (40S ribosomal protein S26 [Ectocarpus siliculosus]) HSP 1 Score: 156.762 bits (395), Expect = 4.201e-46 Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNKKGRGHV RVRCAST KA+PKDKAIKR +VR+IVD SS RDI+EA VF+NY LPKLYIKQYY VEAAVHQR+VRSRS E RR
Sbjct: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRR 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|397572200|gb|EJK48154.1| (hypothetical protein THAOC_33075 [Thalassiosira oceanica]) HSP 1 Score: 159.458 bits (402), Expect = 2.796e-45 Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 0
Query: 26 VVSFILEINIMTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRF 129
+VSFI MTVKRRNHGRNK GRGHVKRVRCASTGKA+PKDKAIKR +VR+IVD SS RDIKEA ++ YQLPKLY+K YY VEAAVHQR+VR RS+ DRR
Sbjct: 133 LVSFI-----MTVKRRNHGRNKHGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRTDRRI 231
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|219127204|ref|XP_002183830.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404553|gb|EEC44499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 153.295 bits (386), Expect = 9.867e-45 Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRRF 129
MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIKEA ++ YQLPKLY+K YY VEAAVHQR+VR RS+E+RR
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSRENRRI 94
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|676388145|ref|XP_009037351.1| (hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens] >gi|323452110|gb|EGB07985.1| hypothetical protein AURANDRAFT_26663 [Aureococcus anophagefferens]) HSP 1 Score: 152.525 bits (384), Expect = 2.260e-44 Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRR+HGRNKKGRGHV RVRCASTGKA+PKDKAIKR +VR+IVD SS RDI++A +E Y LPK+YIKQYY +EAAVHQR+VRSRS+ DRR
Sbjct: 1 MTVKRRSHGRNKKGRGHVNRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAYETYALPKIYIKQYYCIEAAVHQRIVRSRSRTDRR 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1072226038|gb|OEU10782.1| (ribosomal protein S26e [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 151.369 bits (381), Expect = 7.012e-44 Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIKEA ++ YQLPKLY+K +Y VEAAVHQR+VR RSKE RR
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMFYCVEAAVHQRVVRGRSKEGRR 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1210511981|dbj|GAX28836.1| (small subunit ribosomal protein S26e [Fistulifera solaris] >gi|1210517288|dbj|GAX23923.1| small subunit ribosomal protein S26e [Fistulifera solaris]) HSP 1 Score: 150.599 bits (379), Expect = 1.109e-43 Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNK GRGHVKRVRC STGKA+PKDKAIKR +VR+IVD SS RDIK+A ++ YQLPKLY+K YY VEAAVHQR+VR RS+E RR
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKDASAYQEYQLPKLYLKMYYCVEAAVHQRIVRGRSREQRR 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|953495474|emb|CEG42370.1| (40s ribosomal protein s26 [Plasmopara halstedii]) HSP 1 Score: 146.362 bits (368), Expect = 5.649e-42 Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR+IVDQS+ RD+KEA V+E+Y LPK+YIK YY VEAA+HQR+VR RS E R+
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNIVDQSAIRDLKEASVYESYALPKIYIKNYYCVEAAIHQRIVRGRSIEARK 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|675196337|ref|XP_008907053.1| (hypothetical protein PPTG_13080 [Phytophthora parasitica INRA-310] >gi|566021320|gb|ETI44231.1| hypothetical protein F443_11078 [Phytophthora parasitica P1569] >gi|567958622|gb|ETK84209.1| hypothetical protein L915_10800 [Phytophthora parasitica] >gi|567987373|gb|ETL37679.1| hypothetical protein L916_10691 [Phytophthora parasitica] >gi|568016656|gb|ETL90833.1| hypothetical protein L917_10590 [Phytophthora parasitica] >gi|568046987|gb|ETM44088.1| hypothetical protein L914_10640 [Phytophthora parasitica] >gi|568092967|gb|ETN07768.1| hypothetical protein PPTG_13080 [Phytophthora parasitica INRA-310] >gi|570324934|gb|ETO72882.1| hypothetical protein F444_11153 [Phytophthora parasitica P1976] >gi|570948798|gb|ETP14055.1| hypothetical protein F441_10991 [Phytophthora parasitica CJ01A1] >gi|570981755|gb|ETP42105.1| hypothetical protein F442_10980 [Phytophthora parasitica P10297] >gi|970645669|gb|KUF86077.1| 40S ribosomal protein S26 [Phytophthora nicotianae] >gi|1214684676|gb|OWZ02044.1| 40S ribosomal protein S26 [Phytophthora megakarya]) HSP 1 Score: 146.362 bits (368), Expect = 6.438e-42 Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR+IVDQS+ RD+KEA V+E+Y LPK+YIK YY VEAA+HQR+VR RS E R+
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNIVDQSAIRDLKEASVYESYALPKIYIKNYYCVEAAIHQRIVRGRSIEARK 93
BLAST of EWM27637.1 vs. NCBI_GenBank
Match: gi|1173960659|gb|OQS06765.1| (40S ribosomal protein S26 [Thraustotheca clavata]) HSP 1 Score: 145.976 bits (367), Expect = 8.111e-42 Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 0
Query: 36 MTVKRRNHGRNKKGRGHVKRVRCASTGKAVPKDKAIKRMVVRSIVDQSSARDIKEARVFENYQLPKLYIKQYYSVEAAVHQRLVRSRSKEDRR 128
MTVKRRNHGRNKKGRGHVKRV C ST K +PKDKAIKR VVR++VD S+ RD+KEA V+E+Y LPK+YIK YYS+EAA+HQR+VR RS E RR
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVEGRR 93 The following BLAST results are available for this feature:
BLAST of EWM27637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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