EWM27656.1, cds3025 (CDS) Nannochloropsis gaditana

Overview
NameEWM27656.1
Unique Namecds3025
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:533388..533482 -
Alignment locationCM002460.1:532249..533050 -
Alignment locationCM002460.1:531712..532119 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27656.1
Productap-1 complex subunit mu-1-like isoform 1
Orig transcript idgnl|cribi|Naga_100059g12.8061.mrna
GeneAPM4
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:533388..533482 -
CM002460.1supercontigCM002460.1:532249..533050 -
CM002460.1supercontigCM002460.1:531712..532119 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030131clathrin adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR028565MHD
IPR018240Clathrin_mu_CS
IPR022775AP_mu_sigma_su
IPR008968Clathrin_mu_C
IPR001392Clathrin_mu
Homology
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|585109926|gb|EWM27656.1| (ap-1 complex subunit mu-1-like isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 899.427 bits (2323), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMGT 434
            MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMGT
Sbjct:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMGT 434          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|298706728|emb|CBJ29677.1| (Clathrin assembly complex, medium subunit [Ectocarpus siliculosus])

HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 359/432 (83.10%), Postives = 398/432 (92.13%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRM 432
            MVASALFIMDLKGKIIISRN+RGD+PMTVSE F+ ++QE+EE EQ+PIFT EG TF Y++YNNL L+S TKRNSNVALMLVYL +LVDVFK+YFGELEEESIRDNFVIIYEL+DETMDFGYPQT E+KILREYITQEGNRLEAAPRPPVALTN VSWRSEGIKHRKNEIFLDV+EKLNLL S+NGTVLHSEI+GA++MKSFLSGMPELKLGLNDKL+FE+SGR  S+ TK KA+ELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNV+IIIPVP+DVD+P+FKASIG+V YLPD+DA+VW IKQF+G +EYLMRAHFGLPSI+AE +      + WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM
Sbjct:    1 MVASALFIMDLKGKIIISRNFRGDVPMTVSETFSNHIQEREEMEQKPIFTVEGVTFVYVQYNNLILMSATKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQEGNRLEAAPRPPVALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLESSNGTVLHSEIVGAVKMKSFLSGMPELKLGLNDKLLFESSGR--SSGTK-KAVELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVEIIIPVPNDVDSPTFKASIGSVAYLPDQDAVVWSIKQFNGSQEYLMRAHFGLPSISAEDA------REWKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRM 423          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|676393093|ref|XP_009039824.1| (hypothetical protein AURANDRAFT_72236 [Aureococcus anophagefferens] >gi|323449555|gb|EGB05442.1| hypothetical protein AURANDRAFT_72236 [Aureococcus anophagefferens])

HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0
Identity = 346/432 (80.09%), Postives = 389/432 (90.05%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRM 432
            M  S +F+MDLKG++IISRNYRGD+PM+VSERF  YLQE +E +QRPIFT+EG TFAY K+NNLFL+ VTKRNSN+AL+L+YL RLV VFK+YFGEL+EESIRDNFVIIYELMDETMDFGYPQ  ++KILRE+ITQE NR E APRPP+A+TN VSWRSEGIKHRKNEIFLDVIE+LNLLV+ NGTVL+SEIIGAI+MKSFLSGMPELKLGLNDKLMFEA+GR +   T+GKA+ELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLST VKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRS+ANNVDIIIPVP DVD+PSFK+SIGTVTYLPD++ IVW IKQF+G REYLMRAHFGLPS+++E        + WK P+++KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM
Sbjct:    1 MTLSCIFVMDLKGRVIISRNYRGDVPMSVSERFVQYLQENDEMDQRPIFTDEGFTFAYTKHNNLFLMCVTKRNSNIALLLMYLYRLVTVFKDYFGELDEESIRDNFVIIYELMDETMDFGYPQAMDSKILREFITQESNRHETAPRPPIAVTNAVSWRSEGIKHRKNEIFLDVIERLNLLVAGNGTVLNSEIIGAIKMKSFLSGMPELKLGLNDKLMFEATGRPM---TRGKAVELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTHVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSVANNVDIIIPVPHDVDSPSFKSSIGTVTYLPDRNVIVWSIKQFNGAREYLMRAHFGLPSVSSEDP------EHWKAPIEVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRM 423          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|675208987|ref|XP_008913378.1| (hypothetical protein PPTG_17400 [Phytophthora parasitica INRA-310] >gi|566012056|gb|ETI34967.1| hypothetical protein F443_18647 [Phytophthora parasitica P1569] >gi|567949523|gb|ETK75253.1| hypothetical protein L915_18128 [Phytophthora parasitica] >gi|567978188|gb|ETL28680.1| hypothetical protein L916_18030 [Phytophthora parasitica] >gi|568007674|gb|ETL81909.1| hypothetical protein L917_17848 [Phytophthora parasitica] >gi|568037555|gb|ETM35135.1| hypothetical protein L914_17933 [Phytophthora parasitica] >gi|568086387|gb|ETN01277.1| hypothetical protein PPTG_17400 [Phytophthora parasitica INRA-310] >gi|570315772|gb|ETO63720.1| hypothetical protein F444_18642 [Phytophthora parasitica P1976] >gi|570939531|gb|ETP04788.1| hypothetical protein F441_18507 [Phytophthora parasitica CJ01A1] >gi|970638778|gb|KUF82143.1| AP-1 complex subunit mu-1 [Phytophthora nicotianae] >gi|1214689969|gb|OWZ05358.1| Clathrin assembly complex protein [Phytophthora megakarya])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 344/433 (79.45%), Postives = 393/433 (90.76%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+FI DLKGK+IISRNYRGDIPM+ S +F  Y+Q+K++SEQRP+FTE+G TF YLK+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DETMD GYPQTTEA+ILREYITQEG+RLEAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLVS+NGTVLHSEIIGA++MKSFLSGMPELKLGLNDK +FEA+GR   +S+KGKA+E+EDIKFHQCVRLARFE+DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYM+KAKSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REYLMRAHFGLPS+     +  AT+  WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFITDLKGKVIISRNYRGDIPMSASSKFTRYVQDKDDSEQRPVFTEDGYTFVYLKHNNLYLMTVTKVNSNVALMLMYLTRICQVFRDYFGELEEESIRDNFVIIFELLDETMDHGYPQTTEARILREYITQEGHRLEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVSSNGTVLHSEIIGAVKMKSFLSGMPELKLGLNDKALFEATGR---SSSKGKAVEMEDIKFHQCVRLARFESDRTISFIPPDGEFDLMTYRLATHVKPLIWVEAVVEPHSRSRIEYMVKAKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWSIKQFNGSREYLMRAHFGLPSV----DNHEATDD-WKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 425          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|695384795|ref|XP_009518106.1| (hypothetical protein PHYSODRAFT_349597 [Phytophthora sojae] >gi|348683003|gb|EGZ22818.1| hypothetical protein PHYSODRAFT_349597 [Phytophthora sojae])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 344/433 (79.45%), Postives = 393/433 (90.76%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+FI DLKGK+IISRNYRGDIPM+ S +F  Y+Q+K++SEQRP+FTE+G TF YLK+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DETMD GYPQTTEA+ILREYITQEG+RLEAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLVS+NGTVLHSEIIGA++MKSFLSGMPELKLGLNDK +FEA+GR   +S+KGKA+E+EDIKFHQCVRLARFE+DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYM+KAKSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REYLMRAHFGLPS+     +  AT+  WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFITDLKGKVIISRNYRGDIPMSASAKFTRYVQDKDDSEQRPVFTEDGYTFVYLKHNNLYLMTVTKVNSNVALMLMYLTRICQVFRDYFGELEEESIRDNFVIIFELLDETMDHGYPQTTEARILREYITQEGHRLEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVSSNGTVLHSEIIGAVKMKSFLSGMPELKLGLNDKALFEATGR---SSSKGKAVEMEDIKFHQCVRLARFESDRTISFIPPDGEFDLMTYRLATHVKPLIWVEAVVEPHSRSRIEYMVKAKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWSIKQFNGSREYLMRAHFGLPSV----DNHEATDD-WKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 425          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|673043365|ref|XP_008875643.1| (hypothetical protein H310_10930 [Aphanomyces invadans] >gi|574468875|gb|ETV95892.1| hypothetical protein H310_10930 [Aphanomyces invadans])

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 342/435 (78.62%), Postives = 393/435 (90.34%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEE--GCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+FI DLKGKIIISRNYRGDIPM+V+E+F  Y+ EK+++EQRP+FT E  G TF Y+KYNNL+L++VTK NSNVALML+YL+R+  VF+EYFGELEEESIRDNFVII+EL+DETMD GYPQTTEA+ILREYITQEG+R+E+APRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLV++NGTVLHSEI+GA++MKSFLSGMPELKLGLNDK++FEA+GR  S+S+KGKA+E+EDIKFHQCVRLARFE DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYM+K KSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REYLMRAHFGLPSI+   ++A      WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFITDLKGKIIISRNYRGDIPMSVAEKFTQYVTEKDDNEQRPVFTNEESGITFVYIKYNNLYLMTVTKVNSNVALMLMYLNRICQVFQEYFGELEEESIRDNFVIIFELLDETMDHGYPQTTEARILREYITQEGHRMESAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVASNGTVLHSEILGAVKMKSFLSGMPELKLGLNDKMLFEATGR--SSSSKGKAVEMEDIKFHQCVRLARFETDRTISFIPPDGEFDLMTYRLTTHVKPLIWVEAVVEPHSRSRIEYMVKTKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWTIKQFNGSREYLMRAHFGLPSISNTNTAATDE---WKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 430          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|570969848|gb|ETP32967.1| (hypothetical protein F442_18448 [Phytophthora parasitica P10297])

HSP 1 Score: 728.783 bits (1880), Expect = 0.000e+0
Identity = 343/433 (79.21%), Postives = 392/433 (90.53%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+FI DLKGK+IISRNYRGDIPM+ S +F  Y+Q+K++SEQRP+FTE+G TF YLK+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DETMD GYPQTTEA+ILREYITQEG+RLEAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLVS+NGTVLHSEIIGA++MKSFLSGMPELKLGLND  +FEA+GR   +S+KGKA+E+EDIKFHQCVRLARFE+DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYM+KAKSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REYLMRAHFGLPS+     +  AT+  WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFITDLKGKVIISRNYRGDIPMSASSKFTRYVQDKDDSEQRPVFTEDGYTFVYLKHNNLYLMTVTKVNSNVALMLMYLTRICQVFRDYFGELEEESIRDNFVIIFELLDETMDHGYPQTTEARILREYITQEGHRLEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVSSNGTVLHSEIIGAVKMKSFLSGMPELKLGLNDMALFEATGR---SSSKGKAVEMEDIKFHQCVRLARFESDRTISFIPPDGEFDLMTYRLATHVKPLIWVEAVVEPHSRSRIEYMVKAKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWSIKQFNGSREYLMRAHFGLPSV----DNHEATDD-WKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 425          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|1173928144|gb|OQR81826.1| (AP-1 complex subunit mu [Thraustotheca clavata])

HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 340/435 (78.16%), Postives = 393/435 (90.34%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFTEE--GCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+F+ DLKGKIIISRNYRGDIPM+++E+F  Y+ EK++SEQRP+FT E  G TF Y+K+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DET+D GYPQTTEA+ILREYITQEG+R+EAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLV++NGTVLHSEI+GA++MKSFLSGMPELKLGLNDK++FEA+GR+ + S+KGKA+E+EDIKFHQCVRLARFE DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYMIK KSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REY MRAHFGLPSI+   +S  AT   WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:  604 MVLSAVFVTDLKGKIIISRNYRGDIPMSIAEKFTAYVTEKDDSEQRPVFTNEESGVTFVYIKFNNLYLMTVTKVNSNVALMLMYLNRICQVFQDYFGELEEESIRDNFVIIFELLDETIDHGYPQTTEARILREYITQEGHRMEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVASNGTVLHSEILGAVKMKSFLSGMPELKLGLNDKMLFEATGRSTT-SSKGKAVEMEDIKFHQCVRLARFETDRTISFIPPDGEFDLMTYRLNTHVKPLIWVEAVVEPHSRSRIEYMIKTKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWTIKQFNGSREYAMRAHFGLPSIS---NSNTATSDEWKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 1034          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|1173950309|gb|OQR98282.1| (AP-1 complex subunit mu [Achlya hypogyna])

HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 340/435 (78.16%), Postives = 392/435 (90.11%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFT--EEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+F+ DLKGKIIISRNYRGDIPM+++E+F  Y+ EK++SEQRP+FT  E G TF Y+K+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DET+D GYPQTTEA+ILREYITQEG+R+EAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLV++NGTVLHSEI+GA++MKSFLSGMPELKLGLNDK++FEA+GR+ + S+KGKA+E+EDIKFHQCVRLARFE DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYMIK KSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REY MRAHFGLPSI    +S  AT   WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFVTDLKGKIIISRNYRGDIPMSIAEKFTQYVTEKDDSEQRPVFTNDESGVTFVYIKFNNLYLMTVTKVNSNVALMLMYLNRICQVFQDYFGELEEESIRDNFVIIFELLDETIDHGYPQTTEARILREYITQEGHRMEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVASNGTVLHSEILGAVKMKSFLSGMPELKLGLNDKMLFEATGRS-TTSSKGKAVEMEDIKFHQCVRLARFETDRTISFIPPDGEFDLMTYRLNTHVKPLIWVEAVVEPHSRSRIEYMIKTKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWTIKQFNGSREYAMRAHFGLPSIT---NSNTATSDEWKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 431          
BLAST of EWM27656.1 vs. NCBI_GenBank
Match: gi|669157548|ref|XP_008614336.1| (AP-1 complex subunit mu-1 [Saprolegnia diclina VS20] >gi|530734153|gb|EQC32395.1| AP-1 complex subunit mu-1 [Saprolegnia diclina VS20])

HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 339/435 (77.93%), Postives = 392/435 (90.11%), Query Frame = 0
Query:    1 MVASALFIMDLKGKIIISRNYRGDIPMTVSERFATYLQEKEESEQRPIFT--EEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQEGNRLEAAPRPPVALTNTVSWRSEGIKHRKNEIFLDVIEKLNLLVSANGTVLHSEIIGAIRMKSFLSGMPELKLGLNDKLMFEASGRAVSASTKGKAIELEDIKFHQCVRLARFENDRTISFIPPDGEFDLMTYRLSTQVKPLIWVEAVVEPHSHSRIEYMIKAKSQFKSRSIANNVDIIIPVPSDVDTPSFKASIGTVTYLPDKDAIVWGIKQFHGQREYLMRAHFGLPSIAAEGSSANATEKCWKKPVQIKFEIPYFTVSGIQVRYLKIIEKSGFAALPWVRYITCAGDVYLRMG 433
            MV SA+F+ DLKGKIIISRNYRGDIPM+++E+F  Y+ EK+++EQRP+FT  E G TF Y+K+NNL+L++VTK NSNVALML+YL+R+  VF++YFGELEEESIRDNFVII+EL+DET+D GYPQTTEA+ILREYITQEG+R+EAAPRPP ALTN VSWRSEGIKHRKNEIFLDV+EKLNLLV++NGTVLHSEI+GA++MKSFLSGMPELKLGLNDK++FEA+GR+ + S+KGKA+E+EDIKFHQCVRLARFE DRTISFIPPDGEFDLMTYRL+T VKPLIWVEAVVEPHS SRIEYMIK KSQFKSRSIANNV+I+IPVP DVD+PSFK SIG+VTY+PD+DAIVW IKQF+G REY MRAHFGLPSI    +S  AT   WK P+Q+KFEIPYFTVSGIQVRYLKIIEKSG+ ALPWVRYIT  GD  LRM 
Sbjct:    1 MVLSAVFVTDLKGKIIISRNYRGDIPMSIAEKFTQYVTEKDDAEQRPVFTHDESGVTFVYIKFNNLYLMTVTKVNSNVALMLMYLNRICQVFQDYFGELEEESIRDNFVIIFELLDETIDHGYPQTTEARILREYITQEGHRMEAAPRPPTALTNAVSWRSEGIKHRKNEIFLDVVEKLNLLVASNGTVLHSEILGAVKMKSFLSGMPELKLGLNDKMLFEATGRS-TTSSKGKAVEMEDIKFHQCVRLARFETDRTISFIPPDGEFDLMTYRLNTHVKPLIWVEAVVEPHSRSRIEYMIKTKSQFKSRSIANNVEIVIPVPPDVDSPSFKCSIGSVTYVPDRDAIVWTIKQFNGSREYAMRAHFGLPSIT---NSNTATSDEWKAPIQVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRMS 431          
The following BLAST results are available for this feature:
BLAST of EWM27656.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109926|gb|EWM27656.1|0.000e+0100.00ap-1 complex subunit mu-1-like isoform 1 [Nannochl... [more]
gi|298706728|emb|CBJ29677.1|0.000e+083.10Clathrin assembly complex, medium subunit [Ectocar... [more]
gi|676393093|ref|XP_009039824.1|0.000e+080.09hypothetical protein AURANDRAFT_72236 [Aureococcus... [more]
gi|675208987|ref|XP_008913378.1|0.000e+079.45hypothetical protein PPTG_17400 [Phytophthora para... [more]
gi|695384795|ref|XP_009518106.1|0.000e+079.45hypothetical protein PHYSODRAFT_349597 [Phytophtho... [more]
gi|673043365|ref|XP_008875643.1|0.000e+078.62hypothetical protein H310_10930 [Aphanomyces invad... [more]
gi|570969848|gb|ETP32967.1|0.000e+079.21hypothetical protein F442_18448 [Phytophthora para... [more]
gi|1173928144|gb|OQR81826.1|0.000e+078.16AP-1 complex subunit mu [Thraustotheca clavata][more]
gi|1173950309|gb|OQR98282.1|0.000e+078.16AP-1 complex subunit mu [Achlya hypogyna][more]
gi|669157548|ref|XP_008614336.1|0.000e+077.93AP-1 complex subunit mu-1 [Saprolegnia diclina VS2... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3033rna3033Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications