EWM27675.1, cds3007 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27675.1
Unique Name	cds3007
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:485723..486004 +
Alignment location	CM002460.1:486125..486139 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27675.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100125g8.438.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:485723..486004 +
CM002460.1	supercontig	CM002460.1:486125..486139 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27675.1 vs. NCBI_GenBank
Match: gi|585109946|gb|EWM27675.1| (hypothetical protein Naga_100125g8 [Nannochloropsis gaditana])

HSP 1 Score: 188.734 bits (478), Expect = 1.384e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSKALSKQLFKRLQDKLATNTSAQGSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQVLKK 98
            MSKALSKQLFKRLQDKLATNTSAQGSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQVLKK
Sbjct:    1 MSKALSKQLFKRLQDKLATNTSAQGSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQVLKK 98

The following BLAST results are available for this feature:

BLAST of EWM27675.1 vs. NCBI_GenBank

BLAST of EWM27675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109946\|gb\|EWM27675.1\|	1.384e-60	100.00	hypothetical protein Naga_100125g8 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3015	rna3015	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications