EWM27684.1, cds2992 (CDS) Nannochloropsis gaditana

Overview
NameEWM27684.1
Unique Namecds2992
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:448789..449067 +
Alignment locationCM002460.1:449134..449361 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27684.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100104g24.5947.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:448789..449067 +
CM002460.1supercontigCM002460.1:449134..449361 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27684.1 vs. NCBI_GenBank
Match: gi|585109956|gb|EWM27684.1| (hypothetical protein Naga_100104g24 [Nannochloropsis gaditana])

HSP 1 Score: 351.288 bits (900), Expect = 9.498e-123
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MYFRGGDILRENAHELYSQAPCSLLFEAFNFVNATRYMLVFDPKEKFNPCIDVVRSKIPESTSVSTPCHSIGCHMTLLGRASYVVVSGFTTFAPREYGNATIKICVAGNTSAFKPWSYTETTKIQMLTTRSEPVLDKYNVTSIRVFINESAPHECGSSQAEPLFSSFF 168
            MYFRGGDILRENAHELYSQAPCSLLFEAFNFVNATRYMLVFDPKEKFNPCIDVVRSKIPESTSVSTPCHSIGCHMTLLGRASYVVVSGFTTFAPREYGNATIKICVAGNTSAFKPWSYTETTKIQMLTTRSEPVLDKYNVTSIRVFINESAPHECGSSQAEPLFSSFF
Sbjct:    1 MYFRGGDILRENAHELYSQAPCSLLFEAFNFVNATRYMLVFDPKEKFNPCIDVVRSKIPESTSVSTPCHSIGCHMTLLGRASYVVVSGFTTFAPREYGNATIKICVAGNTSAFKPWSYTETTKIQMLTTRSEPVLDKYNVTSIRVFINESAPHECGSSQAEPLFSSFF 168
[Close]
BLAST of EWM27684.1 vs. NCBI_GenBank
Match: gi|585100164|gb|EWM20496.1| (hypothetical protein Naga_100456g3 [Nannochloropsis gaditana])

HSP 1 Score: 229.18 bits (583), Expect = 1.127e-71
Identity = 119/175 (68.00%), Postives = 128/175 (73.14%), Query Frame = 0 
Query:    1 MYFRGGDILRENAHELYSQAPCSLLFEAFNFVNATRYMLVFDPKEKFNPCIDVVRSKIPESTSVSTPCHSIGCHMTLLGRASYVVVSGFTTFA----------------------PREYGNATIKICVAGNTSAFKPWSYTETTKIQMLTTRSEPVLDKYNVTSIRVFINESAPH 153
            MYFRGGDIL+E A   YSQAPCSL  EAFNFVNA+R MLVFD     +PCIDVVRSKIP ST VS PC SIGCHMTLLGRASY+VVSG TTFA                      P EY  ++IKIC AGNTSAFKPWSYTETTKIQMLTTRS+ VL KYN+TSIR F+NES PH
Sbjct:  193 MYFRGGDILQEVADSQYSQAPCSLFIEAFNFVNASRLMLVFDRNATLHPCIDVVRSKIPNSTFVSPPCDSIGCHMTLLGRASYLVVSGVTTFAKASQSLFPFRRRVVFEYFCTHEPSEY-ESSIKICAAGNTSAFKPWSYTETTKIQMLTTRSKLVLGKYNMTSIRDFLNESRPH 366
The following BLAST results are available for this feature:
BLAST of EWM27684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109956|gb|EWM27684.1|9.498e-123100.00hypothetical protein Naga_100104g24 [Nannochlorops... [more]
gi|585100164|gb|EWM20496.1|1.127e-7168.00hypothetical protein Naga_100456g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3000rna3000Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications