EWM27710.1, cds2953 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|585109983|gb|EWM27710.1| (60s ribosomal protein l18a [Nannochloropsis gaditana]) HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL 276
MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL
Sbjct: 1 MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL 276
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|299472067|emb|CBN79653.1| (ribosomal protein L18 [Ectocarpus siliculosus]) HSP 1 Score: 236.884 bits (603), Expect = 1.104e-74 Identity = 111/162 (68.52%), Postives = 127/162 (78.40%), Query Frame = 0
Query: 4 SAKAPLLVARSP-----MVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+A+ LL+ R P +RQYQVVGR TE +PNP V+RMK+FAPNEV S+FWY +HQM KMKKTTGEILDI EL E+N+RIIKNY IWL+YDSRSGTHNMYREYRDLTLTGAVDQ+Y+EMAGRHR R RSIQIIRTG+V AKD KR Q+H
Sbjct: 43 AARPVLLILRQPHGIRLFKMVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFH 204
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|673052245|ref|XP_008880083.1| (hypothetical protein H310_14105 [Aphanomyces invadans] >gi|574464196|gb|ETV91246.1| hypothetical protein H310_14105 [Aphanomyces invadans]) HSP 1 Score: 231.876 bits (590), Expect = 1.458e-73 Identity = 101/140 (72.14%), Postives = 121/140 (86.43%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+ YQVVGR PTE PNP FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL INEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL GA++QLYAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct: 4 IHHYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILSINELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLNGAIEQLYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|669137130|ref|XP_008604133.1| (50S ribosomal protein L18Ae [Saprolegnia diclina VS20] >gi|530744468|gb|EQC42710.1| 50S ribosomal protein L18Ae [Saprolegnia diclina VS20]) HSP 1 Score: 231.106 bits (588), Expect = 3.028e-73 Identity = 101/140 (72.14%), Postives = 123/140 (87.86%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+ QYQVVGR PTE+ PNP FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL +NEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL GAV+Q+YAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct: 4 IHQYQVVGRKAPTESDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILCLNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|1173943041|gb|OQR91948.1| (60S ribosomal protein L18a [Achlya hypogyna]) HSP 1 Score: 230.72 bits (587), Expect = 3.892e-73 Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+ QYQVVGR PTE PNP FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL INEL E+N RI+KNY IW++Y+SRSGTHNMY+EYR +TL GAV+Q+YAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct: 4 IHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|698797146|ref|XP_009831602.1| (hypothetical protein H257_07690 [Aphanomyces astaci] >gi|574113393|gb|ETV78883.1| hypothetical protein H257_07690 [Aphanomyces astaci]) HSP 1 Score: 228.794 bits (582), Expect = 2.353e-72 Identity = 99/140 (70.71%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+ YQVVGR PTE PNP FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL +NEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL A++QLYAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct: 4 IHHYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILSVNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLNSAIEQLYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|1072237718|gb|OEU22445.1| (putative 60S ribosomal protein RPL18A [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 225.713 bits (574), Expect = 5.512e-71 Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 17 VQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQY 159
V ++QYQVVGR PTE PNP +RM IF+PN V+AKS+FWY++HQ KMKKTTGEILD+ E+VE+N RI+KNY IWL+Y+SRSGTHNMYRE+RD++LTGAV QLY EMAGRHRAR RSIQIIRT V AKD+KRA+ MQ+
Sbjct: 3 VAGIMKQYQVVGRKAPTEENPNPEAYRMIIFSPNAVIAKSKFWYYMHQFRKMKKTTGEILDVVEIVEKNRRIVKNYGIWLRYNSRSGTHNMYREFRDVSLTGAVSQLYDEMAGRHRARPRSIQIIRTSTVAAKDLKRANGMQF 145
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|301097025|ref|XP_002897608.1| (60S ribosomal protein L18a [Phytophthora infestans T30-4] >gi|66270193|gb|AAY43426.1| ribosomal protein L18 [Phytophthora infestans] >gi|262106826|gb|EEY64878.1| 60S ribosomal protein L18a [Phytophthora infestans T30-4]) HSP 1 Score: 225.328 bits (573), Expect = 5.998e-71 Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+RQ+QVVGR PTE +PNP +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRDLTL AV+Q+YAE+AGRHRAR RSIQI+RT +V AKD ++ + Q+H
Sbjct: 3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDLTLCSAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|675177515|ref|XP_008897642.1| (hypothetical protein PPTG_05682 [Phytophthora parasitica INRA-310] >gi|566010008|gb|ETI32919.1| hypothetical protein F443_20346 [Phytophthora parasitica P1569] >gi|567947483|gb|ETK73262.1| hypothetical protein L915_19781 [Phytophthora parasitica] >gi|567976170|gb|ETL26699.1| hypothetical protein L916_19666 [Phytophthora parasitica] >gi|568005626|gb|ETL79915.1| hypothetical protein L917_19518 [Phytophthora parasitica] >gi|568035541|gb|ETM33177.1| hypothetical protein L914_19553 [Phytophthora parasitica] >gi|568101800|gb|ETN16482.1| hypothetical protein PPTG_05682 [Phytophthora parasitica INRA-310] >gi|570313702|gb|ETO61650.1| hypothetical protein F444_20347 [Phytophthora parasitica P1976] >gi|570937479|gb|ETP02736.1| hypothetical protein F441_20219 [Phytophthora parasitica CJ01A1] >gi|570967786|gb|ETP30905.1| hypothetical protein F442_20160 [Phytophthora parasitica P10297]) HSP 1 Score: 223.402 bits (568), Expect = 2.852e-70 Identity = 96/140 (68.57%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+RQ+QVVGR PTE +PNP +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRD+TL AV+Q+YAE+AGRHRAR RSIQI+RT +V AKD ++ + Q+H
Sbjct: 3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|695397840|ref|XP_009521845.1| (hypothetical protein PHYSODRAFT_354168 [Phytophthora sojae] >gi|348679312|gb|EGZ19128.1| hypothetical protein PHYSODRAFT_354168 [Phytophthora sojae]) HSP 1 Score: 222.246 bits (565), Expect = 9.156e-70 Identity = 95/140 (67.86%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
+RQ+QVVGR PTE +PNP +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRD+TL AV+Q+Y+E+AGRHRAR RSIQI+RT +V AKD ++ + Q+H
Sbjct: 3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142 The following BLAST results are available for this feature:
BLAST of EWM27710.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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