EWM27710.1, cds2953 (CDS) Nannochloropsis gaditana

Overview
NameEWM27710.1
Unique Namecds2953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:364158..364174 -
Alignment locationCM002460.1:363533..363566 -
Alignment locationCM002460.1:362764..363196 -
Alignment locationCM002460.1:362231..362577 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27710.1
Product60s ribosomal protein l18a
Orig transcript idgnl|cribi|Naga_100034g18.6283.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:364158..364174 -
CM002460.1supercontigCM002460.1:363533..363566 -
CM002460.1supercontigCM002460.1:362764..363196 -
CM002460.1supercontigCM002460.1:362231..362577 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR02887750S_L18Ae/Ribosomal_L18a/L20
IPR023573Ribosomal_L18a/LX
Homology
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|585109983|gb|EWM27710.1| (60s ribosomal protein l18a [Nannochloropsis gaditana])

HSP 1 Score: 579.711 bits (1493), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL 276
            MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL
Sbjct:    1 MHQSAKAPLLVARSPMVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHVIPTASSHSAATQQEPPRNLQSCASQHLLSLKNGSSHSRFDRNSRSKINFLSDLLGECRLLPQSCQCGEEGESVSLHLDKLPRRALRKRSFILENYFCQYVFNKVYAHVLFCSSSL 276          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|299472067|emb|CBN79653.1| (ribosomal protein L18 [Ectocarpus siliculosus])

HSP 1 Score: 236.884 bits (603), Expect = 1.104e-74
Identity = 111/162 (68.52%), Postives = 127/162 (78.40%), Query Frame = 0
Query:    4 SAKAPLLVARSP-----MVQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +A+  LL+ R P          +RQYQVVGR   TE +PNP V+RMK+FAPNEV   S+FWY +HQM KMKKTTGEILDI EL E+N+RIIKNY IWL+YDSRSGTHNMYREYRDLTLTGAVDQ+Y+EMAGRHR R RSIQIIRTG+V AKD KR    Q+H
Sbjct:   43 AARPVLLILRQPHGIRLFKMVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFH 204          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|673052245|ref|XP_008880083.1| (hypothetical protein H310_14105 [Aphanomyces invadans] >gi|574464196|gb|ETV91246.1| hypothetical protein H310_14105 [Aphanomyces invadans])

HSP 1 Score: 231.876 bits (590), Expect = 1.458e-73
Identity = 101/140 (72.14%), Postives = 121/140 (86.43%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +  YQVVGR  PTE  PNP  FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL INEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL GA++QLYAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct:    4 IHHYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILSINELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLNGAIEQLYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|669137130|ref|XP_008604133.1| (50S ribosomal protein L18Ae [Saprolegnia diclina VS20] >gi|530744468|gb|EQC42710.1| 50S ribosomal protein L18Ae [Saprolegnia diclina VS20])

HSP 1 Score: 231.106 bits (588), Expect = 3.028e-73
Identity = 101/140 (72.14%), Postives = 123/140 (87.86%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            + QYQVVGR  PTE+ PNP  FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL +NEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL GAV+Q+YAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct:    4 IHQYQVVGRKAPTESDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILCLNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|1173943041|gb|OQR91948.1| (60S ribosomal protein L18a [Achlya hypogyna])

HSP 1 Score: 230.72 bits (587), Expect = 3.892e-73
Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            + QYQVVGR  PTE  PNP  FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL INEL E+N RI+KNY IW++Y+SRSGTHNMY+EYR +TL GAV+Q+YAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct:    4 IHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|698797146|ref|XP_009831602.1| (hypothetical protein H257_07690 [Aphanomyces astaci] >gi|574113393|gb|ETV78883.1| hypothetical protein H257_07690 [Aphanomyces astaci])

HSP 1 Score: 228.794 bits (582), Expect = 2.353e-72
Identity = 99/140 (70.71%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +  YQVVGR  PTE  PNP  FRMK+FAPNEV+AKSRFWYFLHQM KMKKTTGEIL +NEL E+N RI+KNY +W++Y+SRSGTHNMY+EYRD+TL  A++QLYAE+AGRHRAR RSIQI+RT ++ AKD K+ +T+QYH
Sbjct:    4 IHHYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILSVNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLNSAIEQLYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYH 143          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|1072237718|gb|OEU22445.1| (putative 60S ribosomal protein RPL18A [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 225.713 bits (574), Expect = 5.512e-71
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 0
Query:   17 VQARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQY 159
            V   ++QYQVVGR  PTE  PNP  +RM IF+PN V+AKS+FWY++HQ  KMKKTTGEILD+ E+VE+N RI+KNY IWL+Y+SRSGTHNMYRE+RD++LTGAV QLY EMAGRHRAR RSIQIIRT  V AKD+KRA+ MQ+
Sbjct:    3 VAGIMKQYQVVGRKAPTEENPNPEAYRMIIFSPNAVIAKSKFWYYMHQFRKMKKTTGEILDVVEIVEKNRRIVKNYGIWLRYNSRSGTHNMYREFRDVSLTGAVSQLYDEMAGRHRARPRSIQIIRTSTVAAKDLKRANGMQF 145          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|301097025|ref|XP_002897608.1| (60S ribosomal protein L18a [Phytophthora infestans T30-4] >gi|66270193|gb|AAY43426.1| ribosomal protein L18 [Phytophthora infestans] >gi|262106826|gb|EEY64878.1| 60S ribosomal protein L18a [Phytophthora infestans T30-4])

HSP 1 Score: 225.328 bits (573), Expect = 5.998e-71
Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +RQ+QVVGR  PTE +PNP  +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRDLTL  AV+Q+YAE+AGRHRAR RSIQI+RT +V AKD ++ +  Q+H
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDLTLCSAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|675177515|ref|XP_008897642.1| (hypothetical protein PPTG_05682 [Phytophthora parasitica INRA-310] >gi|566010008|gb|ETI32919.1| hypothetical protein F443_20346 [Phytophthora parasitica P1569] >gi|567947483|gb|ETK73262.1| hypothetical protein L915_19781 [Phytophthora parasitica] >gi|567976170|gb|ETL26699.1| hypothetical protein L916_19666 [Phytophthora parasitica] >gi|568005626|gb|ETL79915.1| hypothetical protein L917_19518 [Phytophthora parasitica] >gi|568035541|gb|ETM33177.1| hypothetical protein L914_19553 [Phytophthora parasitica] >gi|568101800|gb|ETN16482.1| hypothetical protein PPTG_05682 [Phytophthora parasitica INRA-310] >gi|570313702|gb|ETO61650.1| hypothetical protein F444_20347 [Phytophthora parasitica P1976] >gi|570937479|gb|ETP02736.1| hypothetical protein F441_20219 [Phytophthora parasitica CJ01A1] >gi|570967786|gb|ETP30905.1| hypothetical protein F442_20160 [Phytophthora parasitica P10297])

HSP 1 Score: 223.402 bits (568), Expect = 2.852e-70
Identity = 96/140 (68.57%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +RQ+QVVGR  PTE +PNP  +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRD+TL  AV+Q+YAE+AGRHRAR RSIQI+RT +V AKD ++ +  Q+H
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142          
BLAST of EWM27710.1 vs. NCBI_GenBank
Match: gi|695397840|ref|XP_009521845.1| (hypothetical protein PHYSODRAFT_354168 [Phytophthora sojae] >gi|348679312|gb|EGZ19128.1| hypothetical protein PHYSODRAFT_354168 [Phytophthora sojae])

HSP 1 Score: 222.246 bits (565), Expect = 9.156e-70
Identity = 95/140 (67.86%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   21 LRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYH 160
            +RQ+QVVGR  PTE +PNP  +RMK+FAPN V+A+SRFWYFLHQM KMKKTTGEILDINEL E+N R++ NY IW++Y+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHRAR RSIQI+RT +V AKD ++ +  Q+H
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNRRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTQKTNVQQFH 142          
The following BLAST results are available for this feature:
BLAST of EWM27710.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109983|gb|EWM27710.1|0.000e+0100.0060s ribosomal protein l18a [Nannochloropsis gadita... [more]
gi|299472067|emb|CBN79653.1|1.104e-7468.52ribosomal protein L18 [Ectocarpus siliculosus][more]
gi|673052245|ref|XP_008880083.1|1.458e-7372.14hypothetical protein H310_14105 [Aphanomyces invad... [more]
gi|669137130|ref|XP_008604133.1|3.028e-7372.1450S ribosomal protein L18Ae [Saprolegnia diclina V... [more]
gi|1173943041|gb|OQR91948.1|3.892e-7372.8660S ribosomal protein L18a [Achlya hypogyna][more]
gi|698797146|ref|XP_009831602.1|2.353e-7270.71hypothetical protein H257_07690 [Aphanomyces astac... [more]
gi|1072237718|gb|OEU22445.1|5.512e-7169.93putative 60S ribosomal protein RPL18A [Fragilariop... [more]
gi|301097025|ref|XP_002897608.1|5.998e-7169.2960S ribosomal protein L18a [Phytophthora infestans... [more]
gi|675177515|ref|XP_008897642.1|2.852e-7068.57hypothetical protein PPTG_05682 [Phytophthora para... [more]
gi|695397840|ref|XP_009521845.1|9.156e-7067.86hypothetical protein PHYSODRAFT_354168 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2961rna2961Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications