EWM30361.1, cds293 (CDS) Nannochloropsis gaditana

Overview
NameEWM30361.1
Unique Namecds293
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:728297..728324 +
Alignment locationCM002455.1:728467..728559 +
Alignment locationCM002455.1:728646..728723 +
Alignment locationCM002455.1:728816..728922 +
Alignment locationCM002455.1:729015..729086 +
Alignment locationCM002455.1:729192..729405 +
Alignment locationCM002455.1:729475..729848 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30361.1
Productcasein kinase ii subunit beta
Orig transcript idgnl|cribi|Naga_100026g23.10615.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:728297..728324 +
CM002455.1supercontigCM002455.1:728467..728559 +
CM002455.1supercontigCM002455.1:728646..728723 +
CM002455.1supercontigCM002455.1:728816..728922 +
CM002455.1supercontigCM002455.1:729015..729086 +
CM002455.1supercontigCM002455.1:729192..729405 +
CM002455.1supercontigCM002455.1:729475..729848 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005956protein kinase CK2 complex
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0019887protein kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR016149Casein_kin_II_reg-sub_a-hlx
IPR016150Casein_kin_II_reg-sub_b-sht
IPR000704Casein_kinase_II_reg-sub
Homology
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|585113021|gb|EWM30361.1| (casein kinase ii subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES 321
            MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES
Sbjct:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES 321          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1210527220|dbj|GAX13855.1| (casein kinase II subunit beta [Fistulifera solaris])

HSP 1 Score: 201.06 bits (510), Expect = 1.968e-59
Identity = 115/280 (41.07%), Postives = 152/280 (54.29%), Query Frame = 0
Query:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDP 278
             +EDSS S  D    WI  FC  + ++ FCEVER++IEDGFNLYGLR  V +F + LD+ILD+      ++++     Q+A  LY LIH+RY+IT HG++ M  KY  KDFG CP V C GQ VLPVG KD+     V+++CP+C Q+Y P  I                          SS +  +SG         +DGA  GTTFPHLFLMTF +  P   P +  Y+PRVFGFR+H T  +  T     A    +++  S A+      K DG DP
Sbjct:    3 FNEDSSVSGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYSLIHARYVITAHGLDAMYSKYVAKDFGTCPLVPCGGQPVLPVGLKDDLGVDTVKIYCPKCSQVYHPPPI-------------------------RSSRTGNTSG---------VDGAAFGTTFPHLFLMTFNNLSPDPLPVQTTYVPRVFGFRVHKTESTSSTARGADAKSAKSSNGDSPAQ------KVDGSDP 237          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1210524147|dbj|GAX16876.1| (casein kinase II subunit beta [Fistulifera solaris])

HSP 1 Score: 196.823 bits (499), Expect = 7.961e-58
Identity = 114/280 (40.71%), Postives = 150/280 (53.57%), Query Frame = 0
Query:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDP 278
             +EDSS S  D    WI  FC  + ++ FCEVER++IEDGFNLYGLR  V +F + LD+ILD+      ++++     Q+A  LY LIH+RY+IT HG++ M  KY  KDFG CP V C GQ VLPVG KD+     V+++CP+C Q+Y P  I                          SS +  +SG         +DGA  GTTFPHLFLMTF +  P   P    Y+PRVFGFR+H T  +        A    +++  S A+      K DG DP
Sbjct:    3 FNEDSSVSGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYSLIHARYVITAHGLDAMYSKYVAKDFGTCPLVQCGGQPVLPVGLKDDLGVDTVKIYCPKCSQVYHPPPI-------------------------RSSRTGNTSG---------VDGAAFGTTFPHLFLMTFNNLSPDPLPIPTTYVPRVFGFRVHKTESTSSAARAADAKSAKSSNGDSPAQ------KVDGSDP 237          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|219119860|ref|XP_002180681.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408154|gb|EEC48089.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 191.045 bits (484), Expect = 1.309e-56
Identity = 101/225 (44.89%), Postives = 130/225 (57.78%), Query Frame = 0
Query:   20 FCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPP--ARDVYIPRVFGFRLHTTNK 242
            FC  + ++ FCEVER++IEDGFNLYGLR  V +F + LD+ILD+      ++++     Q+A  LYGLIH+RYIIT HG++ M  KY  KDFG CP + C GQ VLPVG KDE     V++FCP+C Q+Y                          FS    S +  SSG         +DGA  GTTFPHLFLMTF + VP P      Y+PRVFGFR+H + +
Sbjct:    9 FCGLKGHEMFCEVERSYIEDGFNLYGLRACVGNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYSKYAAKDFGACPLIQCAGQPVLPVGMKDEMGADTVKIFCPKCNQVY--------------------------FSPPVRSRAGISSG---------VDGAAFGTTFPHLFLMTFSNLVPDPLVLDSTYVPRVFGFRVHKSAR 195          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1072231723|gb|OEU16455.1| (CK_II_beta-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 194.126 bits (492), Expect = 7.193e-56
Identity = 108/245 (44.08%), Postives = 138/245 (56.33%), Query Frame = 0
Query:    2 SEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSR 244
            +EDSS S  D    WI  FC  + ++ FCEVER++IEDGFNLYGLR  V +F + LD+ILD+      ++++     Q+A  LYGLIH+RYIIT HG++ M  KY  K+FG CP V C GQ VLPVG KDE     V++FCP+CQ +Y P  +  R                              S     +    +DGA  GTTFPHLFLMTF + VP   P    YIPRVFGFR+H + + R
Sbjct:    4 NEDSSASGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSR------------------------------SSHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPQDSAYIPRVFGFRVHISTRQR 213          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|351713144|gb|EHB16063.1| (Casein kinase II subunit beta [Heterocephalus glaber])

HSP 1 Score: 187.578 bits (475), Expect = 1.804e-53
Identity = 96/245 (39.18%), Postives = 141/245 (57.55%), Query Frame = 0
Query:    4 DSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILD--KNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGG--------RRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
            D   SS + V SWI+ FC  R N+FFCEV+  +I+D FNL GL   V H++++LD+ILD   +   ED   + +  +Q AE+LYGLIH+RYI+T  G+  M EKYQ+ DFG CPRV CE Q +LP+G  D P +A+V+++CP+C  +YTP   + R     GA +  G          +++ F         T     +  T    DGA+ GT FPH+  M   +  P    + ++PR++GF++H
Sbjct:   74 DVKMSSSEEV-SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK--SSRHHHTDGAYFGTGFPHMLFMVHPEKERFCCPKCMDVYTPKSSRHHHT----DGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 311          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|219115940|ref|XP_002178765.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409532|gb|EEC49463.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 182.57 bits (462), Expect = 2.797e-53
Identity = 98/227 (43.17%), Postives = 123/227 (54.19%), Query Frame = 0
Query:   14 ASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDE--EAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
             SWI  FC  R N+FFCEV+  +I+D FNL GL   V +++ +LD++LD     ED   EA+QE  +  AE+LYGLIH+RYI+T  GM  M EKY+   FG CP V C+GQ VLPVG  D P    V VFCPRC  L+ P   + RQA +                                      DGA+ GTTFPHL+LMT  D +P      Y PRV+GFR+H
Sbjct:   18 GSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLALVVPYYEYALDMVLDVEMPMEDSLTEAQQEIVESAAEMLYGLIHARYIVTNRGMHGMYEKYRTAAFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPK--STRQANI--------------------------------------DGAYFGTTFPHLYLMTHPDMIPTKPTQEYCPRVYGFRVH 204          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1044344157|ref|XP_017377900.1| (PREDICTED: casein kinase II subunit beta isoform X1 [Cebus capucinus imitator])

HSP 1 Score: 182.57 bits (462), Expect = 8.063e-53
Identity = 92/239 (38.49%), Postives = 131/239 (54.81%), Query Frame = 0
Query:    2 SEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILD--KNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
            S D   SS + V SWI+ FC  R N+FFCEV+  +I+D FNL GL   V H++++LD+ILD   +   ED   + +  +Q AE+LYGLIH+RYI+T  G+  M EKYQ+ DFG CPRV CE Q +LP+G  D P +A+V+++CP+C  +YTP      Q                                        MDGA+ GT FPH+  M   +  P    + ++PR++GF++H
Sbjct:   15 SADVKMSSSEEV-SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHQ----------------------------------------MDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 212          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|224011944|ref|XP_002294625.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969645|gb|EED87985.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 181.415 bits (459), Expect = 8.380e-53
Identity = 97/233 (41.63%), Postives = 126/233 (54.08%), Query Frame = 0
Query:    8 SSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDE--EAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
            S+ D   SWIA FC  R N+FFCEV+  +I+D FNL GL   V ++  +LD++LD     ED   E +QE  +  AE+LYGLIH+RYI+T  GM  M EKY+   FG CP V C+GQ VLPVG  D P    V VFCPRC  L+ P   + RQA +                                      DGA+ GTTFPHL+LMT  + +P      Y+PRV+GF+++
Sbjct:   14 SASDEDGSWIAWFCGLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPK--STRQANI--------------------------------------DGAYFGTTFPHLYLMTHPEMIPVRPSQQYVPRVYGFKIN 206          
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|987915402|ref|XP_015433645.1| (PREDICTED: casein kinase II subunit beta isoform X3 [Dufourea novaeangliae])

HSP 1 Score: 181.415 bits (459), Expect = 1.737e-52
Identity = 96/240 (40.00%), Postives = 134/240 (55.83%), Query Frame = 0
Query:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAE-DEEAEQEEY-QQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
            M+ ++  SS + V SWI+ FC  R N+FFCEV+  +I+D FNL GL   V H++++LD+ILD     E D    Q E  +Q AELLYGLIH+RYI+T  G+  M EKYQ  DFG CPRV CE Q++LP+G  D P +A+V+++CP+C  +YTP                            SS    T             DGA+ GT FPH+  M   +  P  A + ++PR++GF++H
Sbjct:    1 MTTETKMSSSEEV-SWISWFCTLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELDGHPNQTELVEQAAELLYGLIHARYILTNRGIAQMVEKYQSGDFGFCPRVYCESQSMLPIGLSDVPGEAMVKIYCPKCMDVYTPK---------------------------SSRHHHT-------------DGAYFGTGFPHMLFMVHPEYRPKRAANQFVPRLYGFKIH 199          
The following BLAST results are available for this feature:
BLAST of EWM30361.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113021|gb|EWM30361.1|0.000e+0100.00casein kinase ii subunit beta [Nannochloropsis gad... [more]
gi|1210527220|dbj|GAX13855.1|1.968e-5941.07casein kinase II subunit beta [Fistulifera solaris... [more]
gi|1210524147|dbj|GAX16876.1|7.961e-5840.71casein kinase II subunit beta [Fistulifera solaris... [more]
gi|219119860|ref|XP_002180681.1|1.309e-5644.89predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072231723|gb|OEU16455.1|7.193e-5644.08CK_II_beta-domain-containing protein [Fragilariops... [more]
gi|351713144|gb|EHB16063.1|1.804e-5339.18Casein kinase II subunit beta [Heterocephalus glab... [more]
gi|219115940|ref|XP_002178765.1|2.797e-5343.17predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1044344157|ref|XP_017377900.1|8.063e-5338.49PREDICTED: casein kinase II subunit beta isoform X... [more]
gi|224011944|ref|XP_002294625.1|8.380e-5341.63predicted protein, partial [Thalassiosira pseudona... [more]
gi|987915402|ref|XP_015433645.1|1.737e-5240.00PREDICTED: casein kinase II subunit beta isoform X... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna293rna293Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications