EWM30361.1, cds293 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|585113021|gb|EWM30361.1| (casein kinase ii subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES 321
MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES
Sbjct: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVTASNAAISNEDSGGGVVSPAKHKRRRTEEES 321
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1210527220|dbj|GAX13855.1| (casein kinase II subunit beta [Fistulifera solaris]) HSP 1 Score: 201.06 bits (510), Expect = 1.968e-59 Identity = 115/280 (41.07%), Postives = 152/280 (54.29%), Query Frame = 0
Query: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDP 278
+EDSS S D WI FC + ++ FCEVER++IEDGFNLYGLR V +F + LD+ILD+ ++++ Q+A LY LIH+RY+IT HG++ M KY KDFG CP V C GQ VLPVG KD+ V+++CP+C Q+Y P I SS + +SG +DGA GTTFPHLFLMTF + P P + Y+PRVFGFR+H T + T A +++ S A+ K DG DP
Sbjct: 3 FNEDSSVSGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYSLIHARYVITAHGLDAMYSKYVAKDFGTCPLVPCGGQPVLPVGLKDDLGVDTVKIYCPKCSQVYHPPPI-------------------------RSSRTGNTSG---------VDGAAFGTTFPHLFLMTFNNLSPDPLPVQTTYVPRVFGFRVHKTESTSSTARGADAKSAKSSNGDSPAQ------KVDGSDP 237
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1210524147|dbj|GAX16876.1| (casein kinase II subunit beta [Fistulifera solaris]) HSP 1 Score: 196.823 bits (499), Expect = 7.961e-58 Identity = 114/280 (40.71%), Postives = 150/280 (53.57%), Query Frame = 0
Query: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDP 278
+EDSS S D WI FC + ++ FCEVER++IEDGFNLYGLR V +F + LD+ILD+ ++++ Q+A LY LIH+RY+IT HG++ M KY KDFG CP V C GQ VLPVG KD+ V+++CP+C Q+Y P I SS + +SG +DGA GTTFPHLFLMTF + P P Y+PRVFGFR+H T + A +++ S A+ K DG DP
Sbjct: 3 FNEDSSVSGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYSLIHARYVITAHGLDAMYSKYVAKDFGTCPLVQCGGQPVLPVGLKDDLGVDTVKIYCPKCSQVYHPPPI-------------------------RSSRTGNTSG---------VDGAAFGTTFPHLFLMTFNNLSPDPLPIPTTYVPRVFGFRVHKTESTSSAARAADAKSAKSSNGDSPAQ------KVDGSDP 237
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|219119860|ref|XP_002180681.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408154|gb|EEC48089.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 191.045 bits (484), Expect = 1.309e-56 Identity = 101/225 (44.89%), Postives = 130/225 (57.78%), Query Frame = 0
Query: 20 FCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPP--ARDVYIPRVFGFRLHTTNK 242
FC + ++ FCEVER++IEDGFNLYGLR V +F + LD+ILD+ ++++ Q+A LYGLIH+RYIIT HG++ M KY KDFG CP + C GQ VLPVG KDE V++FCP+C Q+Y FS S + SSG +DGA GTTFPHLFLMTF + VP P Y+PRVFGFR+H + +
Sbjct: 9 FCGLKGHEMFCEVERSYIEDGFNLYGLRACVGNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYSKYAAKDFGACPLIQCAGQPVLPVGMKDEMGADTVKIFCPKCNQVY--------------------------FSPPVRSRAGISSG---------VDGAAFGTTFPHLFLMTFSNLVPDPLVLDSTYVPRVFGFRVHKSAR 195
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1072231723|gb|OEU16455.1| (CK_II_beta-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 194.126 bits (492), Expect = 7.193e-56 Identity = 108/245 (44.08%), Postives = 138/245 (56.33%), Query Frame = 0
Query: 2 SEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPP--PARDVYIPRVFGFRLHTTNKSR 244
+EDSS S D WI FC + ++ FCEVER++IEDGFNLYGLR V +F + LD+ILD+ ++++ Q+A LYGLIH+RYIIT HG++ M KY K+FG CP V C GQ VLPVG KDE V++FCP+CQ +Y P + R S + +DGA GTTFPHLFLMTF + VP P YIPRVFGFR+H + + R
Sbjct: 4 NEDSSASGHDE--PWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDR---IGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSR------------------------------SSHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPQDSAYIPRVFGFRVHISTRQR 213
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|351713144|gb|EHB16063.1| (Casein kinase II subunit beta [Heterocephalus glaber]) HSP 1 Score: 187.578 bits (475), Expect = 1.804e-53 Identity = 96/245 (39.18%), Postives = 141/245 (57.55%), Query Frame = 0
Query: 4 DSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILD--KNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGG--------RRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
D SS + V SWI+ FC R N+FFCEV+ +I+D FNL GL V H++++LD+ILD + ED + + +Q AE+LYGLIH+RYI+T G+ M EKYQ+ DFG CPRV CE Q +LP+G D P +A+V+++CP+C +YTP + R GA + G +++ F T + T DGA+ GT FPH+ M + P + ++PR++GF++H
Sbjct: 74 DVKMSSSEEV-SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK--SSRHHHTDGAYFGTGFPHMLFMVHPEKERFCCPKCMDVYTPKSSRHHHT----DGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 311
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|219115940|ref|XP_002178765.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409532|gb|EEC49463.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 182.57 bits (462), Expect = 2.797e-53 Identity = 98/227 (43.17%), Postives = 123/227 (54.19%), Query Frame = 0
Query: 14 ASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDE--EAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
SWI FC R N+FFCEV+ +I+D FNL GL V +++ +LD++LD ED EA+QE + AE+LYGLIH+RYI+T GM M EKY+ FG CP V C+GQ VLPVG D P V VFCPRC L+ P + RQA + DGA+ GTTFPHL+LMT D +P Y PRV+GFR+H
Sbjct: 18 GSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLALVVPYYEYALDMVLDVEMPMEDSLTEAQQEIVESAAEMLYGLIHARYIVTNRGMHGMYEKYRTAAFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPK--STRQANI--------------------------------------DGAYFGTTFPHLYLMTHPDMIPTKPTQEYCPRVYGFRVH 204
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|1044344157|ref|XP_017377900.1| (PREDICTED: casein kinase II subunit beta isoform X1 [Cebus capucinus imitator]) HSP 1 Score: 182.57 bits (462), Expect = 8.063e-53 Identity = 92/239 (38.49%), Postives = 131/239 (54.81%), Query Frame = 0
Query: 2 SEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILD--KNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
S D SS + V SWI+ FC R N+FFCEV+ +I+D FNL GL V H++++LD+ILD + ED + + +Q AE+LYGLIH+RYI+T G+ M EKYQ+ DFG CPRV CE Q +LP+G D P +A+V+++CP+C +YTP Q MDGA+ GT FPH+ M + P + ++PR++GF++H
Sbjct: 15 SADVKMSSSEEV-SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHQ----------------------------------------MDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIH 212
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|224011944|ref|XP_002294625.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969645|gb|EED87985.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 181.415 bits (459), Expect = 8.380e-53 Identity = 97/233 (41.63%), Postives = 126/233 (54.08%), Query Frame = 0
Query: 8 SSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDE--EAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
S+ D SWIA FC R N+FFCEV+ +I+D FNL GL V ++ +LD++LD ED E +QE + AE+LYGLIH+RYI+T GM M EKY+ FG CP V C+GQ VLPVG D P V VFCPRC L+ P + RQA + DGA+ GTTFPHL+LMT + +P Y+PRV+GF+++
Sbjct: 14 SASDEDGSWIAWFCGLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPK--STRQANI--------------------------------------DGAYFGTTFPHLYLMTHPEMIPVRPSQQYVPRVYGFKIN 206
BLAST of EWM30361.1 vs. NCBI_GenBank
Match: gi|987915402|ref|XP_015433645.1| (PREDICTED: casein kinase II subunit beta isoform X3 [Dufourea novaeangliae]) HSP 1 Score: 181.415 bits (459), Expect = 1.737e-52 Identity = 96/240 (40.00%), Postives = 134/240 (55.83%), Query Frame = 0
Query: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAE-DEEAEQEEY-QQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGGRRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLH 238
M+ ++ SS + V SWI+ FC R N+FFCEV+ +I+D FNL GL V H++++LD+ILD E D Q E +Q AELLYGLIH+RYI+T G+ M EKYQ DFG CPRV CE Q++LP+G D P +A+V+++CP+C +YTP SS T DGA+ GT FPH+ M + P A + ++PR++GF++H
Sbjct: 1 MTTETKMSSSEEV-SWISWFCTLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELDGHPNQTELVEQAAELLYGLIHARYILTNRGIAQMVEKYQSGDFGFCPRVYCESQSMLPIGLSDVPGEAMVKIYCPKCMDVYTPK---------------------------SSRHHHT-------------DGAYFGTGFPHMLFMVHPEYRPKRAANQFVPRLYGFKIH 199 The following BLAST results are available for this feature:
BLAST of EWM30361.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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