EWM27746.1, cds2927 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|585110019|gb|EWM27746.1| (Protein of unknown function DUF3411 [Nannochloropsis gaditana]) HSP 1 Score: 841.647 bits (2173), Expect = 0.000e+0 Identity = 415/415 (100.00%), Postives = 415/415 (100.00%), Query Frame = 0 Query: 1 MVKRLIALGLACGGLGAVRAFAPLSSCLARSPESSLKDEVWHGRRKPFSLFSIASCRNERPIGWKSPAPGGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 MVKRLIALGLACGGLGAVRAFAPLSSCLARSPESSLKDEVWHGRRKPFSLFSIASCRNERPIGWKSPAPGGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE Sbjct: 1 MVKRLIALGLACGGLGAVRAFAPLSSCLARSPESSLKDEVWHGRRKPFSLFSIASCRNERPIGWKSPAPGGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|159490938|ref|XP_001703430.1| (hypothetical protein CHLREDRAFT_188153 [Chlamydomonas reinhardtii] >gi|158280354|gb|EDP06112.1| hypothetical protein CHLREDRAFT_188153 [Chlamydomonas reinhardtii]) HSP 1 Score: 175.637 bits (444), Expect = 3.224e-47 Identity = 112/310 (36.13%), Postives = 162/310 (52.26%), Query Frame = 0 Query: 117 PQD--VSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLL-GISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPS--------AAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 P D + LLA AGR P + L+A +T +L+RY E +A+L+ GI FR+RLL D K+GIE+ +G V + AE+ +R+E E DF FA+ L ++++F + AP+ A+G A N + P N FQ VPPG P++LS RL L VG ASL+G G T+ L +R+QL PT + P AP Q V+ TS A GV+++VS+N+RYQ+++G+ EERGI N HL SF R NTF+GS +D+++ +Q+ Sbjct: 98 PMDPKIVALLAAAGRSVDSFPADFKYGLLANKVTPEILQRYFSFE--ANFIAKLVWGIDGFRERLLADPSFFVKLGIEIGIGVVMKITAEYTKRQENFAKEADFVFANTLMAIIADFMLTWLPAPTLSYRPRATASGNALVNFFASCPDNAFQKVPPGMEPFSLSQRLGAILRNGSKLLGVGFCASLIGVGVTNSLLFVRQQL--DPTMAPPNAP------------------QN--VLATSAAYGVYMSVSSNLRYQIIAGIVEERGIEVLFKGNHQLCHLLSFVARTGNTFLGSLLWVDFVRLCGMQK 383
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|1109279456|ref|XP_019163996.1| (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Ipomoea nil]) HSP 1 Score: 165.622 bits (418), Expect = 1.652e-43 Identity = 104/300 (34.67%), Postives = 167/300 (55.67%), Query Frame = 0 Query: 124 LAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAA--GAAASNAAR------NIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 LA+AGR LP + A++ G + +++ RYLE+E+ G ++ LL F++RLL D + K+ +E VG ++ AE++RRRE FNEL+ FAD++ ++++F V + AP+ + A NA R N P N FQ+ PGT ++L RL LF VG +SL+G T+ L RK A ++++ E+V + +PV+ TS+A GV++AVS+N+RYQ+++GV E+R + L +KL F VR NTF+GS +DY +++ +Q+ Sbjct: 104 LAEAGRSLESLPNDLKAAILDGKIPGSIVLRYLELEK-SGFLSWLLRFGGFKERLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFFNELEIVFADVVMAIIADFMLVYLPAPTVSLRSPIALNAGRLAKFFHNCPENAFQVALPGT-TFSLLHRLGAIVRNGTKLFAVGTTSSLVGTVVTNALINARK---------------------AVDKSSAEEV-ENVPVLSTSVAYGVYMAVSSNLRYQVLAGVIEQRLLEPMLHQHKLILSALCFAVRTGNTFLGSLLWVDYARWIGIQK 379
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|460411045|ref|XP_004250925.1| (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Solanum lycopersicum]) HSP 1 Score: 164.081 bits (414), Expect = 1.213e-42 Identity = 107/301 (35.55%), Postives = 165/301 (54.82%), Query Frame = 0 Query: 124 LAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAA---GAAASNAAR------NIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 L +AGR LP + A+ G + +++ RY E+E+ ++A LL F++RLL D + K+G+E VG ++ AE++RRRE FNEL+ AD++ ++++F V + AP+ + AA NA R N P N FQM PGT Y+L R+ LF VG A+SL+G T+ + +K ++S AAEE V+ +PV+ TS+A GV++AVS+N+RYQ+V+GV E+R + L +KL F VR NTF+GS +DY + + +Q+ Sbjct: 124 LTEAGRSLDSLPKDLKAAIEDGRIPGSIVLRYFELEK-SPLMAWLLRFGGFKERLLADDLFLAKVGMECGVGIFTKTAAEYERRRENFFNELEIVVADVVMAVIADFMLVYLPAPTVSLRPRMAAVNAGRIAKFFYNCPDNAFQMALPGT-SYSLLQRIGAIARNGSKLFAVGTASSLVGTLVTNAVLNAKKAVNS----------------SAAEE------VENLPVVSTSVAYGVYMAVSSNLRYQVVAGVIEQRILEPMLHKHKLMLSAMCFAVRTGNTFLGSLLWVDYARLIGIQK 400
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|502144274|ref|XP_004505639.1| (PREDICTED: uncharacterized protein LOC101503763 [Cicer arietinum]) HSP 1 Score: 162.925 bits (411), Expect = 1.796e-42 Identity = 104/324 (32.10%), Postives = 171/324 (52.78%), Query Frame = 0 Query: 102 EGNGDDGDGEGSVTLPQDVSE---LLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPS--------AAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQ 414 G+G++ DG P ++E LLA+AGR +P A+ G + ++++ R+LE+E+ + LL + F++RLL D + KIG+E VG ++ AE+DRRRE FNEL+ FAD++ ++++F V + AP+ + A + N P N FQ+ GT Y+ R LF VG A+SL+G T+ L +K ++ +AEE ++ +P++ TS A GV++AVS+N+RYQ+V+G+ E+R + L +KL F VR NT++GS +DY +++ +Q Sbjct: 97 NGDGENNDG------PNGLNEALLLLAQAGRTLESVPADLASAIKEGKIPASVVSRFLELEK-SPFLRWLLQFAGFKERLLADDLFLAKIGMECGVGVFTKTAAEYDRRRENFFNELEIVFADVVMAILADFMLVYLPAPTVSLRPPLGVSAGAITKFFHNCPDNAFQVALSGTS-YSFLQRFGAIVRNGTKLFAVGSASSLVGTAVTNALINAKKAVNKS----------------SAEE------IENVPILSTSAAYGVYMAVSSNLRYQVVAGIIEQRLLEPLLHQHKLVLSAICFAVRTGNTYLGSLLWVDYARWIGVQ 390
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|970063705|ref|XP_015058796.1| (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Solanum pennellii]) HSP 1 Score: 162.54 bits (410), Expect = 4.213e-42 Identity = 107/301 (35.55%), Postives = 163/301 (54.15%), Query Frame = 0 Query: 124 LAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAA---GAAASNAAR------NIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 L +AGR LP + A+ G + +++ RY E+E+ M A LL F++RLL D + K+G+E VG ++ AE++RRRE FNEL+ AD++ ++++F V + AP+ + AA NA R N P N FQM PGT Y+L R+ LF VG A+SL+G T+ + +K ++ AAEE V+ +PV+ TS+A GV++AVS+N+RYQ+V+GV E+R + L +KL F VR NTF+GS +DY + + +Q+ Sbjct: 124 LTEAGRSLDSLPKDLKAAIEDGRIPGSIVLRYFELEKSPVM-AWLLRFGGFKERLLADDLFLAKVGMECGVGIFTKTAAEYERRRENFFNELEIVVADVVMAVIADFMLVYLPAPTVSLRPRMAAVNAGRIAKFFYNCPDNAFQMALPGT-SYSLLQRIGAIARNGSKLFAVGTASSLVGTVVTNAVLNAKKAVNK----------------SAAEE------VENLPVVSTSVAYGVYMAVSSNLRYQVVAGVIEQRILEPMLHKHKLMLSAMCFAVRTGNTFLGSLLWVDYARLIGIQK 400
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|1098751137|ref|XP_018839731.1| (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Juglans regia]) HSP 1 Score: 161.77 bits (408), Expect = 5.219e-42 Identity = 107/320 (33.44%), Postives = 170/320 (53.12%), Query Frame = 0 Query: 104 NGDDGDGEGSVTLPQDVSELLAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPS---------AAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQ 414 N D + E ++ + LA+AGR LP + A+ AG + ++++R+LE+E+ G+ L+ FR+RLL D + K+GIE VG ++ AE++RRRE FNEL+ FAD++ + ++F V + AP+ +AGA A N P N FQ+ GT Y+ RL LF VG A+SL+G T+ L RK + +SSP+ V+ +P++ TS A GV++A+S+N+RYQ+++GV E+R + L +KL F VR NT++GS +DY +++ +Q Sbjct: 98 NAGDKNREEAIMV-------LAEAGRLLESLPKDLRAAIEAGKVPGSVVERFLELEK-SGLFRWLMQFGGFRERLLADDLFLAKVGIECGVGIFTKTAAEYERRRENFFNELEIVFADVVMAICADFMLVYLPAPTVSLRPPLAISAGAIA-KFFHNCPDNAFQVALAGTS-YSFLQRLGAVLRNGTKLFAVGTASSLVGTAVTNALINARKAV----DKSSPVE------------------VENVPILSTSAAYGVYMAISSNLRYQVLAGVIEQRILEPLLHKHKLMLSAICFAVRTGNTYLGSLLWVDYARWIGIQ 385
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|641864628|gb|KDO83314.1| (hypothetical protein CISIN_1g017076mg [Citrus sinensis]) HSP 1 Score: 160.614 bits (405), Expect = 1.118e-41 Identity = 107/300 (35.67%), Postives = 162/300 (54.00%), Query Frame = 0 Query: 124 LAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAA-----GAAASNAAR---NIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 LAKAGR +LP A+ AG + +A++KRYLE+E+ + LL FR+RLL D + K+ +E VG ++ AE +RRRE ELDF FAD++ ++++F V + AP+ + + A+ N P N FQ+ GT Y+L R+ LF VG +ASL+G G T+ L RK L + S G AE+ +P+I TS+A GV++AVS+N+RYQ+++GV E+R + L NK+ F R NTF+GS +DY +++ +Q+ Sbjct: 100 LAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEK-SPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTS-YSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDT-------------SFAGEAED---------VPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQK 375
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|1009129553|ref|XP_015881827.1| (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Ziziphus jujuba]) HSP 1 Score: 160.999 bits (406), Expect = 1.170e-41 Identity = 139/406 (34.24%), Postives = 201/406 (49.51%), Query Frame = 0 Query: 35 SLKDEVWHGRRKP-----FSLFSIASCRNERPIGWKS---PAP-----GGGLHWRSGGAGNGGVGDGGNGGGGGASGWSKEGNGDDGDGEGSVTLPQDVSELL---AKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPS---------AAGAAASNAARNIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 SL H +P FS F+I + R + + S PAP + +R AG GG G GG GGGGG G S GN D GD E ++ SE L A+AGR +P A+ AG + ++KRY E+E+ + LLG F++RLL D + K+ IE VG ++ AE +RRRE ELDF FAD++ +V++F V + AP+ +AG A P N FQ+ GT Y+ R+ LF VG ASL+G G T+ L RK + S G AE+ +P++ TS+A GV++AVS+N+RYQ+++G+ E+R + L +KL + F VR NTF+GS +DY ++ +Q+ Sbjct: 15 SLPSPNHHHNHQPSFPQNFSFFTITTHRVNKYSYFHSFNCPAPIITFNASSVSFRPPAAGGGGGGGGGGGGGGGGGGDSNNGNEDSGDRE------RNKSEALLALAEAGRSLESIPKDLGGAIEAGRIPGEIVKRYFELEK-SAVFRWLLGFGGFKERLLADDLFLTKVAIECGVGIFTKTAAELERRRENFTKELDFVFADVVMAIVADFMLVWLPAPTVPLRPPLALSAGPIA-KLFYGCPENAFQVALAGTS-YSFLQRIGAILRNGAKLFAVGTGASLVGTGVTNALINARKAVDK-------------SFAGEAED---------VPILSTSVAYGVYMAVSSNIRYQILAGIIEQRILEPLLHQHKLILSVICFAVRTGNTFLGSLMWVDYARWTGIQK 389
BLAST of EWM27746.1 vs. NCBI_GenBank
Match: gi|567892863|ref|XP_006438952.1| (hypothetical protein CICLE_v10031842mg [Citrus clementina] >gi|568858791|ref|XP_006482927.1| PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Citrus sinensis] >gi|557541148|gb|ESR52192.1| hypothetical protein CICLE_v10031842mg [Citrus clementina]) HSP 1 Score: 160.614 bits (405), Expect = 1.215e-41 Identity = 107/300 (35.67%), Postives = 162/300 (54.00%), Query Frame = 0 Query: 124 LAKAGRKFTELPTSTQKALMAGSMTSALLKRYLEVERRGGMVAQLLGISIFRDRLLMDVYLMDKIGIEMAVGAVAQSLAEWDRRREKLFNELDFAFADLLTCLVSNFAAVLIAAPSAA-----GAAASNAAR---NIPANMFQMVPPGTRPYALSDRLVCPFLKMPTLFVVGLAASLLGFGTTSILTLLRKQLHSKPTQSSPIAPLIASATGAAEETAQEDVVQKIPVIKTSLAVGVFLAVSTNVRYQLVSGVFEERGIARYLAHNKLADHLASFGVRACNTFVGSGQMIDYLKFLKLQE 415 LAKAGR +LP A+ AG + +A++KRYLE+E+ + LL FR+RLL D + K+ +E VG ++ AE +RRRE ELDF FAD++ ++++F V + AP+ + + A+ N P N FQ+ GT Y+L R+ LF VG +ASL+G G T+ L RK L + S G AE+ +P+I TS+A GV++AVS+N+RYQ+++GV E+R + L NK+ F R NTF+GS +DY +++ +Q+ Sbjct: 100 LAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEK-SPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTS-YSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDT-------------SFAGEAED---------VPIISTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHENKIILAAICFAFRTGNTFLGSLMWVDYARWVGIQK 375 The following BLAST results are available for this feature:
BLAST of EWM27746.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|