EWM27716.1, cds2926 (CDS) Nannochloropsis gaditana

Overview
NameEWM27716.1
Unique Namecds2926
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:309467..309546 -
Alignment locationCM002460.1:309234..309318 -
Alignment locationCM002460.1:307753..309141 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27716.1
ProductSMAD/FHA domain protein
Orig transcript idgnl|cribi|Naga_100034g46.6289.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:309467..309546 -
CM002460.1supercontigCM002460.1:309234..309318 -
CM002460.1supercontigCM002460.1:307753..309141 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR013083Znf_RING/FYVE/PHD
IPR000253FHA_dom
IPR003613Ubox_domain
Homology
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|585109989|gb|EWM27716.1| (SMAD/FHA domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query:    1 MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
            MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS
Sbjct:    1 MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|298707691|emb|CBJ26008.1| (armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 220.705 bits (561), Expect = 1.247e-58
Identity = 174/507 (34.32%), Postives = 239/507 (47.14%), Query Frame = 0
Query:   13 IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH-------------------------------GLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILT-GGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVAL---------GTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTG 478
            +RD F CPIT ++ RDPVV +DG TY+R AI  WL    TSP T E I    LVPNLNL+RLI D + EGG                                G   +  T E      A   + ++VL+CLG         S  VT+ G +GGR +  T  G + +   D TVS+RHF   +   D+     F ++DLGSAGGT++RL       L  G +IL+G+HQ  VI  S        A A    ++  A     ++AT P+  SP APG   +T  +       A +  G+ A+         G  +P   IS       S  +  +G+       I    ++ EA    A  G   P + L+CFAPEG+P+Q + F VG EGA++G +++NT++ S E GG V+G+D  +SG H RI Y    G F + DG     K S NGTW RLS  H  S    +    EIL+G +  FSV+       S  PP+ E   +C  G
Sbjct: 1042 LRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEPIERLLLVPNLNLRRLIKDFLIEGGEELYVGGRDGDGGDQDDGSGEVDRDEGDGGESGWEERSGTGEHRECRFALVTEQILVLKCLGSVYPGGNIESFRVTERGCVGGRNQPNTLAGAEFVQISDATVSKRHFGIAFDKEDKL----FSLRDLGSAGGTFVRLELGVSTLLYPGMIILLGRHQLEVIDVSSTDS---EAKAVEGDRNPFAVGDKGSNATSPS--SPSAPGNSSSTAAR---RRGMACSIVGSAAIVNKGPTTDGGEREPRHPISPQPAKSSSSKQHEEGEGG-----ISDDEKELEA---GAKPGRRNPRVCLECFAPEGTPIQGKRFFVGREGATLGGRKTNTIAFSYESGGTVMGIDDFISGVHARIVYDDGGGFFHITDG--NSFKSSKNGTWVRLSGKHTESRPYPLSHGTEILIGTV-PFSVTLGRLKKSS--PPKAE-VTSCREG 1522          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|298706487|emb|CBJ29474.1| (WD repeat, SAM and U-box domain containing 1 [Ectocarpus siliculosus])

HSP 1 Score: 172.555 bits (436), Expect = 2.002e-43
Identity = 98/239 (41.00%), Postives = 133/239 (55.65%), Query Frame = 0
Query:    6 PVIVRGR-IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEE--------------------------LSHETAFGL--DDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRR-ILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVIS 214
            P++VRG  +RDEF CPIT ++ RDPV+A DG TY+R AI  WL  + TSP T + +    LVPNLNL+RLI DL+AEGG GL      ++E                           + E  F L  + ++VL+CLGP +SDW  +S  VT+ G +GGR++  +  G D M F D TVSRRHF    G + +     F + D GSAGGT++RL       L    MI++GKHQ  + +
Sbjct:    5 PLLVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVDSDEEGDGPGGSSRAQGGGGGRRERGREKEGNREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHF----GIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITN 239          

HSP 2 Score: 118.627 bits (296), Expect = 1.081e-24
Identity = 60/125 (48.00%), Postives = 85/125 (68.00%), Query Frame = 0
Query:  338 LMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLME 462
            + L+CFAPEG+P+Q   F VG EGA++GR+Q+NT++ S E GG V+G+D+++SGEH RI Y  E     ++DG     KPSTNGTW RLS +H  S    +    EIL+ G +RFSV+ E+ ++E
Sbjct:  433 VCLECFAPEGTPIQGSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTP--TKPSTNGTWFRLSGMHTESRPYPLSNGAEILI-GTVRFSVTLESMVVE 554          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|470381072|ref|XP_004333752.1| (Ubox domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440790456|gb|ELR11739.1| Ubox domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 86.2705 bits (212), Expect = 1.474e-15
Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0
Query:   12 RIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
            ++  +F CPIT +I RDPV+A+DG TYE++ I KWLE + TSPMT++++SSA L+PN  LK+LI
Sbjct:   10 KVSHQFFCPITQEIMRDPVIAEDGHTYEKAVIEKWLEKSPTSPMTRQQLSSAMLIPNFALKQLI 73          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|813227541|ref|XP_012212847.1| (hypothetical protein SPRG_18031, partial [Saprolegnia parasitica CBS 223.65] >gi|641520070|gb|KDO16444.1| hypothetical protein SPRG_18031, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 81.2629 bits (199), Expect = 9.410e-15
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   17 FQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLD 105
            F CPI+ +I RDPV+A+DG +YER+ I++W ++++ SP+T EE+ S +L+PN +LK+ I +          A CTTT      +A  LD
Sbjct:    7 FLCPISCEIMRDPVIARDGHSYERAQITRWFQSHRRSPVTNEELPSTELMPNYSLKQAILE-----HQAATAPCTTTVATQPPSAPPLD 90          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551568886|ref|XP_005770398.1| (hypothetical protein EMIHUDRAFT_61507, partial [Emiliania huxleyi CCMP1516] >gi|485621526|gb|EOD17969.1| hypothetical protein EMIHUDRAFT_61507, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 78.9518 bits (193), Expect = 9.462e-15
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
            D+F CPIT +I  DPVVA DG++YERSAI +WL T  TSP+T  E+ S  L PN +L+R+I
Sbjct:    4 DDFICPITTEIMSDPVVAADGQSYERSAIERWLATKSTSPLTSAELESKGLFPNHSLRRMI 64          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|676389033|ref|XP_009037795.1| (hypothetical protein AURANDRAFT_9746, partial [Aureococcus anophagefferens] >gi|323451939|gb|EGB07815.1| hypothetical protein AURANDRAFT_9746, partial [Aureococcus anophagefferens])

HSP 1 Score: 77.0258 bits (188), Expect = 5.626e-14
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
            DEF CPI+ ++ +DPV+A DG TYERSAI+ W E  +TSP+T E++ + DLVP   ++ LI
Sbjct:    6 DEFACPISYELMQDPVIASDGHTYERSAIAAWFERRRTSPITNEDLPNLDLVPAHAMRSLI 66          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551590951|ref|XP_005779790.1| (hypothetical protein EMIHUDRAFT_73367, partial [Emiliania huxleyi CCMP1516] >gi|485632329|gb|EOD27361.1| hypothetical protein EMIHUDRAFT_73367, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.0258 bits (188), Expect = 9.525e-14
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH-GLAAKCTTTEELS 97
            D+F CPIT ++  DPV+A DG  YERSAI +WL T  TSP+T   +    L PN  L+R I D  A  GH GL        ELS
Sbjct:    8 DDFVCPITTELMSDPVMAADGHAYERSAIERWLATKSTSPLTGGALEHPYLTPNHMLRRQIRDWEARQGHRGLCGVSAARRELS 91          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551568507|ref|XP_005770209.1| (hypothetical protein EMIHUDRAFT_60131, partial [Emiliania huxleyi CCMP1516] >gi|485621336|gb|EOD17780.1| hypothetical protein EMIHUDRAFT_60131, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.485 bits (184), Expect = 1.874e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
            D+F CPIT ++  DPV+A DG++YERSAI +WL T  TSP+T E +    L PN +L+R+I
Sbjct:    6 DDFLCPITTEVMADPVMAADGQSYERSAIERWLTTKSTSPLTGEALEYTGLFPNHSLRRMI 66          
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551580147|ref|XP_005775632.1| (hypothetical protein EMIHUDRAFT_61213, partial [Emiliania huxleyi CCMP1516] >gi|485627576|gb|EOD23203.1| hypothetical protein EMIHUDRAFT_61213, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.485 bits (184), Expect = 2.811e-13
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH 84
            D+F CPIT ++  DPV+A DG  YERSAI +WL T  TSP+T   +    L PN  L+R I D  A  GH
Sbjct:    8 DDFVCPITTELMSDPVMAADGHAYERSAIERWLATKSTSPLTGGALEHPYLTPNHMLRRQIRDWEARQGH 77          
The following BLAST results are available for this feature:
BLAST of EWM27716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109989|gb|EWM27716.1|0.000e+0100.00SMAD/FHA domain protein [Nannochloropsis gaditana][more]
gi|298707691|emb|CBJ26008.1|1.247e-5834.32armadillo/beta-catenin repeat family protein / U-b... [more]
gi|298706487|emb|CBJ29474.1|2.002e-4341.00WD repeat, SAM and U-box domain containing 1 [Ecto... [more]
gi|470381072|ref|XP_004333752.1|1.474e-1556.25Ubox domain containing protein [Acanthamoeba caste... [more]
gi|813227541|ref|XP_012212847.1|9.410e-1541.57hypothetical protein SPRG_18031, partial [Saproleg... [more]
gi|551568886|ref|XP_005770398.1|9.462e-1557.38hypothetical protein EMIHUDRAFT_61507, partial [Em... [more]
gi|676389033|ref|XP_009037795.1|5.626e-1452.46hypothetical protein AURANDRAFT_9746, partial [Aur... [more]
gi|551590951|ref|XP_005779790.1|9.525e-1447.62hypothetical protein EMIHUDRAFT_73367, partial [Em... [more]
gi|551568507|ref|XP_005770209.1|1.874e-1352.46hypothetical protein EMIHUDRAFT_60131, partial [Em... [more]
gi|551580147|ref|XP_005775632.1|2.811e-1350.00hypothetical protein EMIHUDRAFT_61213, partial [Em... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2934rna2934Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications