EWM27716.1, cds2926 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|585109989|gb|EWM27716.1| (SMAD/FHA domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1058.9 bits (2737), Expect = 0.000e+0 Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query: 1 MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS
Sbjct: 1 MQKLNPVIVRGRIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVALGTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTGGRDGEGAVGMMSDGEGSTPRSKQDKENGPIGREEPMDTS 517
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|298707691|emb|CBJ26008.1| (armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 220.705 bits (561), Expect = 1.247e-58 Identity = 174/507 (34.32%), Postives = 239/507 (47.14%), Query Frame = 0
Query: 13 IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH-------------------------------GLAAKCTTTEELSHETAFGLDDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRRILT-GGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSPGAPGTDDNTENQGFPNMPPASAAAGAVAL---------GTEDPNDSISGAGGGGESGLRGRQGQDFPLGRLIQRYLQQPEAPLVSAGEGSEQPLLMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPPREEGAKACDTG 478
+RD F CPIT ++ RDPVV +DG TY+R AI WL TSP T E I LVPNLNL+RLI D + EGG G + T E A + ++VL+CLG S VT+ G +GGR + T G + + D TVS+RHF + D+ F ++DLGSAGGT++RL L G +IL+G+HQ VI S A A ++ A ++AT P+ SP APG +T + A + G+ A+ G +P IS S + +G+ I ++ EA A G P + L+CFAPEG+P+Q + F VG EGA++G +++NT++ S E GG V+G+D +SG H RI Y G F + DG K S NGTW RLS H S + EIL+G + FSV+ S PP+ E +C G
Sbjct: 1042 LRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEPIERLLLVPNLNLRRLIKDFLIEGGEELYVGGRDGDGGDQDDGSGEVDRDEGDGGESGWEERSGTGEHRECRFALVTEQILVLKCLGSVYPGGNIESFRVTERGCVGGRNQPNTLAGAEFVQISDATVSKRHFGIAFDKEDKL----FSLRDLGSAGGTFVRLELGVSTLLYPGMIILLGRHQLEVIDVSSTDS---EAKAVEGDRNPFAVGDKGSNATSPS--SPSAPGNSSSTAAR---RRGMACSIVGSAAIVNKGPTTDGGEREPRHPISPQPAKSSSSKQHEEGEGG-----ISDDEKELEA---GAKPGRRNPRVCLECFAPEGTPIQGKRFFVGREGATLGGRKTNTIAFSYESGGTVMGIDDFISGVHARIVYDDGGGFFHITDG--NSFKSSKNGTWVRLSGKHTESRPYPLSHGTEILIGTV-PFSVTLGRLKKSS--PPKAE-VTSCREG 1522
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|298706487|emb|CBJ29474.1| (WD repeat, SAM and U-box domain containing 1 [Ectocarpus siliculosus]) HSP 1 Score: 172.555 bits (436), Expect = 2.002e-43 Identity = 98/239 (41.00%), Postives = 133/239 (55.65%), Query Frame = 0
Query: 6 PVIVRGR-IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEE--------------------------LSHETAFGL--DDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRR-ILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVIS 214
P++VRG +RDEF CPIT ++ RDPV+A DG TY+R AI WL + TSP T + + LVPNLNL+RLI DL+AEGG GL ++E + E F L + ++VL+CLGP +SDW +S VT+ G +GGR++ + G D M F D TVSRRHF G + + F + D GSAGGT++RL L MI++GKHQ + +
Sbjct: 5 PLLVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVDSDEEGDGPGGSSRAQGGGGGRRERGREKEGNREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHF----GIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITN 239 HSP 2 Score: 118.627 bits (296), Expect = 1.081e-24 Identity = 60/125 (48.00%), Postives = 85/125 (68.00%), Query Frame = 0
Query: 338 LMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLME 462
+ L+CFAPEG+P+Q F VG EGA++GR+Q+NT++ S E GG V+G+D+++SGEH RI Y E ++DG KPSTNGTW RLS +H S + EIL+ G +RFSV+ E+ ++E
Sbjct: 433 VCLECFAPEGTPIQGSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTP--TKPSTNGTWFRLSGMHTESRPYPLSNGAEILI-GTVRFSVTLESMVVE 554
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|470381072|ref|XP_004333752.1| (Ubox domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440790456|gb|ELR11739.1| Ubox domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 86.2705 bits (212), Expect = 1.474e-15 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 12 RIRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
++ +F CPIT +I RDPV+A+DG TYE++ I KWLE + TSPMT++++SSA L+PN LK+LI
Sbjct: 10 KVSHQFFCPITQEIMRDPVIAEDGHTYEKAVIEKWLEKSPTSPMTRQQLSSAMLIPNFALKQLI 73
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|813227541|ref|XP_012212847.1| (hypothetical protein SPRG_18031, partial [Saprolegnia parasitica CBS 223.65] >gi|641520070|gb|KDO16444.1| hypothetical protein SPRG_18031, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 81.2629 bits (199), Expect = 9.410e-15 Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 0
Query: 17 FQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTEELSHETAFGLD 105
F CPI+ +I RDPV+A+DG +YER+ I++W ++++ SP+T EE+ S +L+PN +LK+ I + A CTTT +A LD
Sbjct: 7 FLCPISCEIMRDPVIARDGHSYERAQITRWFQSHRRSPVTNEELPSTELMPNYSLKQAILE-----HQAATAPCTTTVATQPPSAPPLD 90
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551568886|ref|XP_005770398.1| (hypothetical protein EMIHUDRAFT_61507, partial [Emiliania huxleyi CCMP1516] >gi|485621526|gb|EOD17969.1| hypothetical protein EMIHUDRAFT_61507, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 78.9518 bits (193), Expect = 9.462e-15 Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
Query: 15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
D+F CPIT +I DPVVA DG++YERSAI +WL T TSP+T E+ S L PN +L+R+I
Sbjct: 4 DDFICPITTEIMSDPVVAADGQSYERSAIERWLATKSTSPLTSAELESKGLFPNHSLRRMI 64
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|676389033|ref|XP_009037795.1| (hypothetical protein AURANDRAFT_9746, partial [Aureococcus anophagefferens] >gi|323451939|gb|EGB07815.1| hypothetical protein AURANDRAFT_9746, partial [Aureococcus anophagefferens]) HSP 1 Score: 77.0258 bits (188), Expect = 5.626e-14 Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0
Query: 15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
DEF CPI+ ++ +DPV+A DG TYERSAI+ W E +TSP+T E++ + DLVP ++ LI
Sbjct: 6 DEFACPISYELMQDPVIASDGHTYERSAIAAWFERRRTSPITNEDLPNLDLVPAHAMRSLI 66
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551590951|ref|XP_005779790.1| (hypothetical protein EMIHUDRAFT_73367, partial [Emiliania huxleyi CCMP1516] >gi|485632329|gb|EOD27361.1| hypothetical protein EMIHUDRAFT_73367, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 77.0258 bits (188), Expect = 9.525e-14 Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH-GLAAKCTTTEELS 97
D+F CPIT ++ DPV+A DG YERSAI +WL T TSP+T + L PN L+R I D A GH GL ELS
Sbjct: 8 DDFVCPITTELMSDPVMAADGHAYERSAIERWLATKSTSPLTGGALEHPYLTPNHMLRRQIRDWEARQGHRGLCGVSAARRELS 91
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551568507|ref|XP_005770209.1| (hypothetical protein EMIHUDRAFT_60131, partial [Emiliania huxleyi CCMP1516] >gi|485621336|gb|EOD17780.1| hypothetical protein EMIHUDRAFT_60131, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 75.485 bits (184), Expect = 1.874e-13 Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 0
Query: 15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLI 75
D+F CPIT ++ DPV+A DG++YERSAI +WL T TSP+T E + L PN +L+R+I
Sbjct: 6 DDFLCPITTEVMADPVMAADGQSYERSAIERWLTTKSTSPLTGEALEYTGLFPNHSLRRMI 66
BLAST of EWM27716.1 vs. NCBI_GenBank
Match: gi|551580147|ref|XP_005775632.1| (hypothetical protein EMIHUDRAFT_61213, partial [Emiliania huxleyi CCMP1516] >gi|485627576|gb|EOD23203.1| hypothetical protein EMIHUDRAFT_61213, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 75.485 bits (184), Expect = 2.811e-13 Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 0
Query: 15 DEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGH 84
D+F CPIT ++ DPV+A DG YERSAI +WL T TSP+T + L PN L+R I D A GH
Sbjct: 8 DDFVCPITTELMSDPVMAADGHAYERSAIERWLATKSTSPLTGGALEHPYLTPNHMLRRQIRDWEARQGH 77 The following BLAST results are available for this feature:
BLAST of EWM27716.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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