EWM27774.1, cds2902 (CDS) Nannochloropsis gaditana

Overview
NameEWM27774.1
Unique Namecds2902
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:243017..243228 +
Alignment locationCM002460.1:243304..243382 +
Alignment locationCM002460.1:243497..243550 +
Alignment locationCM002460.1:243649..243681 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27774.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100187g2.5308.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:243017..243228 +
CM002460.1supercontigCM002460.1:243304..243382 +
CM002460.1supercontigCM002460.1:243497..243550 +
CM002460.1supercontigCM002460.1:243649..243681 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM27774.1 vs. NCBI_GenBank
Match: gi|585110057|gb|EWM27774.1| (hypothetical protein Naga_100187g2 [Nannochloropsis gaditana])

HSP 1 Score: 248.44 bits (633), Expect = 2.410e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 MSSSLSFSNDALRPSLPPTSQGPRQQPEQQIPKPKVILLLHSDKQNHGLLQKLKRHADLVKFTNLETSDAVVSCRNRTLSLLLLTLNEMNNPSLFAKTVIRLSNFQAKSSQHPIARPRRCLPRSL 125
            MSSSLSFSNDALRPSLPPTSQGPRQQPEQQIPKPKVILLLHSDKQNHGLLQKLKRHADLVKFTNLETSDAVVSCRNRTLSLLLLTLNEMNNPSLFAKTVIRLSNFQAKSSQHPIARPRRCLPRSL
Sbjct:    1 MSSSLSFSNDALRPSLPPTSQGPRQQPEQQIPKPKVILLLHSDKQNHGLLQKLKRHADLVKFTNLETSDAVVSCRNRTLSLLLLTLNEMNNPSLFAKTVIRLSNFQAKSSQHPIARPRRCLPRSL 125
The following BLAST results are available for this feature:
BLAST of EWM27774.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110057|gb|EWM27774.1|2.410e-83100.00hypothetical protein Naga_100187g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2910rna2910Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications