EWM27770.1, cds2898 (CDS) Nannochloropsis gaditana

Overview
NameEWM27770.1
Unique Namecds2898
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:234314..234373 +
Alignment locationCM002460.1:234479..234617 +
Alignment locationCM002460.1:234771..235051 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27770.1
Productthe actin binding protein cofilin-like protein
Orig transcript idgnl|cribi|Naga_100187g6.5304.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:234314..234373 +
CM002460.1supercontigCM002460.1:234479..234617 +
CM002460.1supercontigCM002460.1:234771..235051 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0030042actin filament depolymerization
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0015629actin cytoskeleton
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003779actin binding
Vocabulary: INTERPRO
TermDefinition
IPR017904ADF/Cofilin/Destrin
IPR029006ADF-H/Gelsolin-like_dom
IPR002108ADF-H
Homology
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|585110053|gb|EWM27770.1| (the actin binding protein cofilin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 332.798 bits (852), Expect = 1.015e-115
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query:    1 MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159
            MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT
Sbjct:    1 MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|397629234|gb|EJK69270.1| (hypothetical protein THAOC_09491 [Thalassiosira oceanica])

HSP 1 Score: 198.364 bits (503), Expect = 1.146e-62
Identity = 93/142 (65.49%), Postives = 114/142 (80.28%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQ-ILPAVKRFT 159
            MSTGV  +DEV +SF++FKL + PY +RY IYEIK  K I I  QG R   +EDF  +LPE+DCRY +ID+EFETDDGRPTSKI+F+SW PDTA +R KM+Y+GSKEA+K ALVGVGIH+NATD SEL+FE+ ILP  K+FT
Sbjct:    1 MSTGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFEEAILPVCKKFT 142          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|224000593|ref|XP_002289969.1| (the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975177|gb|EED93506.1| the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 194.897 bits (494), Expect = 2.180e-61
Identity = 92/141 (65.25%), Postives = 112/141 (79.43%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQ-ILPAVKRF 158
            M+TGV   DEV +SF +FKL + PY +RY +YEIK  K I IEKQG     +EDF  +LPE+DCRY +ID+EFETDDGRPTSK++F+SW PDTA VR KM+Y+GSKEA+K ALVGVGIH+NATD SEL+FE  ILP VK+F
Sbjct:    1 MATGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFETAILPVVKKF 141          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1173949126|gb|OQR97197.1| (actin-depolymerizing factor [Thraustotheca clavata])

HSP 1 Score: 177.563 bits (449), Expect = 1.802e-54
Identity = 85/141 (60.28%), Postives = 108/141 (76.60%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
            MS+GV   D+V S F+ FKLQRAPYN RY IY+I+ D+I IE +G R  ++EDF   L E  S+CRY +ID++F T DGRPTSK++F+SW+PDT+K++SKMVYA SKEAIKR LVGVGI+L+ATD SEL F  I   V +F
Sbjct:    1 MSSGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHDEIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGVSKF 141          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1210529674|dbj|GAX11768.1| (cofilin [Fistulifera solaris])

HSP 1 Score: 171.014 bits (432), Expect = 6.282e-52
Identity = 79/141 (56.03%), Postives = 108/141 (76.60%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-QILPAVKRF 158
            MSTGV  ADEV S+F+ FKL +    ++YIIY+I++ K I  EK G +   ++DFCADLP+ DCRY +ID++F TDDGRPTSK++ ++W PD+  +R+KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E  ILP  ++F
Sbjct:    1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASILPICRKF 140          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|813177257|ref|XP_012205098.1| (hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65] >gi|641530009|gb|KDO24154.1| hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.014 bits (432), Expect = 7.225e-52
Identity = 81/142 (57.04%), Postives = 108/142 (76.06%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADL--PESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
            MS+GV  +D+V + F+ FKLQ+APYN RY IY+I+ D +I IE +G R   ++DF A L    ++CRY +ID++F T DGRPTSK++F+SW+PDTA+V+SKM+YA SKEAIKR LVGVGI+L+ATD SEL F  I   V +F
Sbjct:    1 MSSGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1210520404|dbj|GAX20835.1| (cofilin [Fistulifera solaris])

HSP 1 Score: 170.629 bits (431), Expect = 9.945e-52
Identity = 78/141 (55.32%), Postives = 108/141 (76.60%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-QILPAVKRF 158
            MSTGV  ADEV S+F+ FKL +    ++YIIY+I++ K I  EK G +   ++DFCADLP+ DCRY +ID++F TDDGRPTSK++ ++W PD+  +R+KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E  +LP  ++F
Sbjct:    1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASVLPICRKF 140          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|669164012|ref|XP_008617568.1| (hypothetical protein SDRG_13268 [Saprolegnia diclina VS20] >gi|530730687|gb|EQC28929.1| hypothetical protein SDRG_13268 [Saprolegnia diclina VS20])

HSP 1 Score: 167.933 bits (424), Expect = 1.150e-50
Identity = 80/142 (56.34%), Postives = 107/142 (75.35%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADL--PESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
            MS+GV   D+V + F+ FKLQ+AP+N RY IY+I+ D +I IE +G R   ++DF A L    ++CRY +ID++F T DGRPTSK++F+SW+PDTA+V+SKM+YA SKEAIKR LVGVGI+L+ATD SEL F  I   V +F
Sbjct:    1 MSSGVGVHDDVVTEFNDFKLQKAPFNFRYFIYKIEGDSEIVIEHRGDRSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1173953450|gb|OQS00992.1| (actin-depolymerizing factor [Achlya hypogyna])

HSP 1 Score: 163.696 bits (413), Expect = 4.984e-49
Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
            MS+GV   D+V + F+ FKLQRAPYN RY IY+I+   ++ IE +G R   +EDF   L     +CRY +ID++F T DGRPTSK++F+SW+PDTAK++SKM+YA SKEAIKR LVGVGI+L+ATD SEL    I   V +F
Sbjct:    3 MSSGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGVSKF 144          
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|675198071|ref|XP_008907920.1| (hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >gi|566020389|gb|ETI43300.1| hypothetical protein F443_11729 [Phytophthora parasitica P1569] >gi|567957770|gb|ETK83368.1| hypothetical protein L915_11419 [Phytophthora parasitica] >gi|567986442|gb|ETL36766.1| hypothetical protein L916_11324 [Phytophthora parasitica] >gi|568015783|gb|ETL89960.1| hypothetical protein L917_11216 [Phytophthora parasitica] >gi|568046129|gb|ETM43254.1| hypothetical protein L914_11262 [Phytophthora parasitica] >gi|568092138|gb|ETN06952.1| hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >gi|570324003|gb|ETO71951.1| hypothetical protein F444_11813 [Phytophthora parasitica P1976] >gi|570947826|gb|ETP13083.1| hypothetical protein F441_11663 [Phytophthora parasitica CJ01A1] >gi|570980518|gb|ETP41172.1| hypothetical protein F442_11631 [Phytophthora parasitica P10297] >gi|970656245|gb|KUF94281.1| Actin-depolymerizing factor [Phytophthora nicotianae])

HSP 1 Score: 163.696 bits (413), Expect = 5.108e-49
Identity = 78/142 (54.93%), Postives = 105/142 (73.94%), Query Frame = 0
Query:   20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
            MS+GV   DEV + F+ FKL+RAP++ RY IY+I++D +I IE  G    +++D    L +  +DCRYA++D++  T DGRPTSKI+FLSW+PDTA+++SKM+YA SKEAIKR L+GVGIHL ATD SEL  E I   V +F
Sbjct:    1 MSSGVGVDDEVITQFNDFKLKRAPHDFRYFIYKIEDDSQIVIESTGPSSESYQDMADKLAQITNDCRYALVDLDLTTKDGRPTSKIVFLSWSPDTARIKSKMLYASSKEAIKRVLMGVGIHLTATDASELSLESIEDGVAKF 142          
The following BLAST results are available for this feature:
BLAST of EWM27770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110053|gb|EWM27770.1|1.015e-115100.00the actin binding protein cofilin-like protein [Na... [more]
gi|397629234|gb|EJK69270.1|1.146e-6265.49hypothetical protein THAOC_09491 [Thalassiosira oc... [more]
gi|224000593|ref|XP_002289969.1|2.180e-6165.25the actin binding protein cofilin-like protein [Th... [more]
gi|1173949126|gb|OQR97197.1|1.802e-5460.28actin-depolymerizing factor [Thraustotheca clavata... [more]
gi|1210529674|dbj|GAX11768.1|6.282e-5256.03cofilin [Fistulifera solaris][more]
gi|813177257|ref|XP_012205098.1|7.225e-5257.04hypothetical protein SPRG_10581 [Saprolegnia paras... [more]
gi|1210520404|dbj|GAX20835.1|9.945e-5255.32cofilin [Fistulifera solaris][more]
gi|669164012|ref|XP_008617568.1|1.150e-5056.34hypothetical protein SDRG_13268 [Saprolegnia dicli... [more]
gi|1173953450|gb|OQS00992.1|4.984e-4955.63actin-depolymerizing factor [Achlya hypogyna][more]
gi|675198071|ref|XP_008907920.1|5.108e-4954.93hypothetical protein PPTG_12927 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2906rna2906Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications