EWM27770.1, cds2898 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|585110053|gb|EWM27770.1| (the actin binding protein cofilin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 332.798 bits (852), Expect = 1.015e-115 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159
MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT
Sbjct: 1 MPHVHKYRRAHPPPRIQTIMSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRFT 159
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|397629234|gb|EJK69270.1| (hypothetical protein THAOC_09491 [Thalassiosira oceanica]) HSP 1 Score: 198.364 bits (503), Expect = 1.146e-62 Identity = 93/142 (65.49%), Postives = 114/142 (80.28%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQ-ILPAVKRFT 159
MSTGV +DEV +SF++FKL + PY +RY IYEIK K I I QG R +EDF +LPE+DCRY +ID+EFETDDGRPTSKI+F+SW PDTA +R KM+Y+GSKEA+K ALVGVGIH+NATD SEL+FE+ ILP K+FT
Sbjct: 1 MSTGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFEEAILPVCKKFT 142
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|224000593|ref|XP_002289969.1| (the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975177|gb|EED93506.1| the actin binding protein cofilin-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 194.897 bits (494), Expect = 2.180e-61 Identity = 92/141 (65.25%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQ-ILPAVKRF 158
M+TGV DEV +SF +FKL + PY +RY +YEIK K I IEKQG +EDF +LPE+DCRY +ID+EFETDDGRPTSK++F+SW PDTA VR KM+Y+GSKEA+K ALVGVGIH+NATD SEL+FE ILP VK+F
Sbjct: 1 MATGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFETAILPVVKKF 141
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1173949126|gb|OQR97197.1| (actin-depolymerizing factor [Thraustotheca clavata]) HSP 1 Score: 177.563 bits (449), Expect = 1.802e-54 Identity = 85/141 (60.28%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDKIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
MS+GV D+V S F+ FKLQRAPYN RY IY+I+ D+I IE +G R ++EDF L E S+CRY +ID++F T DGRPTSK++F+SW+PDT+K++SKMVYA SKEAIKR LVGVGI+L+ATD SEL F I V +F
Sbjct: 1 MSSGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHDEIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGVSKF 141
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1210529674|dbj|GAX11768.1| (cofilin [Fistulifera solaris]) HSP 1 Score: 171.014 bits (432), Expect = 6.282e-52 Identity = 79/141 (56.03%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-QILPAVKRF 158
MSTGV ADEV S+F+ FKL + ++YIIY+I++ K I EK G + ++DFCADLP+ DCRY +ID++F TDDGRPTSK++ ++W PD+ +R+KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E ILP ++F
Sbjct: 1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASILPICRKF 140
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|813177257|ref|XP_012205098.1| (hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65] >gi|641530009|gb|KDO24154.1| hypothetical protein SPRG_10581 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 171.014 bits (432), Expect = 7.225e-52 Identity = 81/142 (57.04%), Postives = 108/142 (76.06%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADL--PESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
MS+GV +D+V + F+ FKLQ+APYN RY IY+I+ D +I IE +G R ++DF A L ++CRY +ID++F T DGRPTSK++F+SW+PDTA+V+SKM+YA SKEAIKR LVGVGI+L+ATD SEL F I V +F
Sbjct: 1 MSSGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1210520404|dbj|GAX20835.1| (cofilin [Fistulifera solaris]) HSP 1 Score: 170.629 bits (431), Expect = 9.945e-52 Identity = 78/141 (55.32%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKEDK-IQIEKQGARENNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFE-QILPAVKRF 158
MSTGV ADEV S+F+ FKL + ++YIIY+I++ K I EK G + ++DFCADLP+ DCRY +ID++F TDDGRPTSK++ ++W PD+ +R+KM+Y+GSKEA+K AL GVGIH+NATD SEL+ E +LP ++F
Sbjct: 1 MSTGVVVADEVTSTFNAFKLGQGE-KLKYIIYKIEDKKTIVTEKTGEKGKTYDDFCADLPDDDCRYGLIDLDFTTDDGRPTSKLVLITWNPDSGSIRNKMLYSGSKEALKTALNGVGIHINATDHSELDLEASVLPICRKF 140
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|669164012|ref|XP_008617568.1| (hypothetical protein SDRG_13268 [Saprolegnia diclina VS20] >gi|530730687|gb|EQC28929.1| hypothetical protein SDRG_13268 [Saprolegnia diclina VS20]) HSP 1 Score: 167.933 bits (424), Expect = 1.150e-50 Identity = 80/142 (56.34%), Postives = 107/142 (75.35%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADL--PESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
MS+GV D+V + F+ FKLQ+AP+N RY IY+I+ D +I IE +G R ++DF A L ++CRY +ID++F T DGRPTSK++F+SW+PDTA+V+SKM+YA SKEAIKR LVGVGI+L+ATD SEL F I V +F
Sbjct: 1 MSSGVGVHDDVVTEFNDFKLQKAPFNFRYFIYKIEGDSEIVIEHRGDRSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|1173953450|gb|OQS00992.1| (actin-depolymerizing factor [Achlya hypogyna]) HSP 1 Score: 163.696 bits (413), Expect = 4.984e-49 Identity = 79/142 (55.63%), Postives = 103/142 (72.54%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
MS+GV D+V + F+ FKLQRAPYN RY IY+I+ ++ IE +G R +EDF L +CRY +ID++F T DGRPTSK++F+SW+PDTAK++SKM+YA SKEAIKR LVGVGI+L+ATD SEL I V +F
Sbjct: 3 MSSGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGVSKF 144
BLAST of EWM27770.1 vs. NCBI_GenBank
Match: gi|675198071|ref|XP_008907920.1| (hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >gi|566020389|gb|ETI43300.1| hypothetical protein F443_11729 [Phytophthora parasitica P1569] >gi|567957770|gb|ETK83368.1| hypothetical protein L915_11419 [Phytophthora parasitica] >gi|567986442|gb|ETL36766.1| hypothetical protein L916_11324 [Phytophthora parasitica] >gi|568015783|gb|ETL89960.1| hypothetical protein L917_11216 [Phytophthora parasitica] >gi|568046129|gb|ETM43254.1| hypothetical protein L914_11262 [Phytophthora parasitica] >gi|568092138|gb|ETN06952.1| hypothetical protein PPTG_12927 [Phytophthora parasitica INRA-310] >gi|570324003|gb|ETO71951.1| hypothetical protein F444_11813 [Phytophthora parasitica P1976] >gi|570947826|gb|ETP13083.1| hypothetical protein F441_11663 [Phytophthora parasitica CJ01A1] >gi|570980518|gb|ETP41172.1| hypothetical protein F442_11631 [Phytophthora parasitica P10297] >gi|970656245|gb|KUF94281.1| Actin-depolymerizing factor [Phytophthora nicotianae]) HSP 1 Score: 163.696 bits (413), Expect = 5.108e-49 Identity = 78/142 (54.93%), Postives = 105/142 (73.94%), Query Frame = 0
Query: 20 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIIYEIKED-KIQIEKQGARENNWEDFCADLPE--SDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPAVKRF 158
MS+GV DEV + F+ FKL+RAP++ RY IY+I++D +I IE G +++D L + +DCRYA++D++ T DGRPTSKI+FLSW+PDTA+++SKM+YA SKEAIKR L+GVGIHL ATD SEL E I V +F
Sbjct: 1 MSSGVGVDDEVITQFNDFKLKRAPHDFRYFIYKIEDDSQIVIESTGPSSESYQDMADKLAQITNDCRYALVDLDLTTKDGRPTSKIVFLSWSPDTARIKSKMLYASSKEAIKRVLMGVGIHLTATDASELSLESIEDGVAKF 142 The following BLAST results are available for this feature:
BLAST of EWM27770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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