EWM30401.1, cds289 (CDS) Nannochloropsis gaditana

Overview
NameEWM30401.1
Unique Namecds289
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:720749..721693 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30401.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100026g27.10655.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:720749..721693 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
GO:0006506GPI anchor biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR009600PIG-U
Homology
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|585113061|gb|EWM30401.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query:    1 MCRCTSHIHYPHRCLAMSTDVLQACCAVICAVSRSVLLVTIINALAHLAAFPSSQFSANARIVFFSLSTGFLFCLLAYLDPLVASVLGLSAFCVSGHTRNISLAMSVAPSMILVFTSQTLRTSLFHTPQTPPVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK 314
            MCRCTSHIHYPHRCLAMSTDVLQACCAVICAVSRSVLLVTIINALAHLAAFPSSQFSANARIVFFSLSTGFLFCLLAYLDPLVASVLGLSAFCVSGHTRNISLAMSVAPSMILVFTSQTLRTSLFHTPQTPPVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK
Sbjct:    1 MCRCTSHIHYPHRCLAMSTDVLQACCAVICAVSRSVLLVTIINALAHLAAFPSSQFSANARIVFFSLSTGFLFCLLAYLDPLVASVLGLSAFCVSGHTRNISLAMSVAPSMILVFTSQTLRTSLFHTPQTPPVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK 314          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|698787538|ref|XP_009826801.1| (hypothetical protein H257_04115 [Aphanomyces astaci] >gi|574117890|gb|ETV83371.1| hypothetical protein H257_04115 [Aphanomyces astaci])

HSP 1 Score: 96.6709 bits (239), Expect = 7.559e-19
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK 314
            PN+G++WY   E+F +F SYF ++   HP+LYV PL  R+     A+PL       F  V+  +  +  P+P  L  I   +    LHP+ ++ +P+K  +L  G+GV  VL P+M +LWL   SGNAN+ Y QTLV+               +R   +      R+D++ + H   N+ K
Sbjct:  281 PNIGIFWYFFMELFDRFQSYFLVLLHLHPYLYVLPLFIRL----RARPLA------FACVLLALVSIFQPYPS-LGDIGFALPCFLLHPSSIIGMPTK-FVLAAGLGVATVLLPVMGFLWLYPGSGNANFFYNQTLVFQYF-----------YLRGIGQFLAATLRRDKQLDEHVKLNRPK 438          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|298709637|emb|CBJ31446.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1149 bits (209), Expect = 6.717e-15
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 0
Query:  133 VPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMG--VPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVRE 289
             PN+GL+WY  AEVF +F  +FR++F + P++YV P   R+         P  L  L   +      L  P+P L+  + +   L   HP     +    L++ VGM   VP +L P M +LWL A +GNAN+ YFQT+  + L A+ +L+    LV+ 
Sbjct:  276 TPNIGLYWYFFAEVFPRFRGFFRVLFLSQPYVYVLPATLRL------GMFPEALASLVLAIFG----LFQPYPTLVDPM-LAGCLFLCHPRTSARMR---LVIPVGMAALVPALLLPTMRHLWLQAGTGNANFYYFQTVGLNVLLAVFVLQFAAALVKR 420          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|953499593|emb|CEG39019.1| (gpi transamidase subunit pig-u family protein [Plasmopara halstedii])

HSP 1 Score: 83.9593 bits (206), Expect = 1.521e-14
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK 314
            PN+G++WY   EVF +F  YF  V   HP +YV P+  R+    + +P      + +  V+ GI  L   +P         + +L LHP  +M + ++ L + +G+GV   + P+M +LWL   SGNAN+ Y QTLV+   N+ L+               G   ++D+  E ++    K+
Sbjct:  271 PNIGIFWYFFTEVFDRFIPYFLFVLHLHPLIYVAPIYLRL----AHRP------QAYACVLIGIFSLFQAYPS-FGDFGFFLTMLALHPKSIMMIENRFLYV-LGLGVATCMLPVMWFLWLFPASGNANFFYNQTLVYQIFNSQLITAFV-----------GATMKRDKVVEIYKTKCLKE 428          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|1173960959|gb|OQS07039.1| (hypothetical protein THRCLA_00956 [Thraustotheca clavata])

HSP 1 Score: 83.5741 bits (205), Expect = 2.638e-14
Identity = 52/173 (30.06%), Postives = 86/173 (49.71%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRES 306
            PN+GL+WY   E+F +F +YF  +   HPFLYV P+  R+     ++   R L  +    + GI  +   +P         +    LHP  ++ +  K +++  G+ V  VL P M YLWL   SGN+N+ Y QTLV+     L ++++T   +    R + + Q   + +E 
Sbjct:  287 PNIGLFWYFFTELFDRFRNYFLFILHIHPFLYVVPIYIRLRYINPSQSRTRPLAAV--STLLGIFAVFQAYPS-FGDFGFFITSCLLHPRSIIGMQQKFIMM-TGIAVATVLLPTMWYLWLYPGSGNSNFFYNQTLVYQ----LFVVKITTEFLTATLRRDKQLQEFWKTKED 451          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|301109325|ref|XP_002903743.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096746|gb|EEY54798.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 82.4185 bits (202), Expect = 5.628e-14
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKKK 314
            PN+G++WY   EVF +F  YF  V   HP +YV P+  R+    + +P      + +   + GI  L   +P         +++L LHP  +M + ++ + + +G+GV   + P+M +LWL   SGNAN+ Y QTLV+   N       T ++         R +  D+ R S     +K 
Sbjct:  232 PNVGIFWYFFMEVFDRFIPYFLFVLHLHPAIYVVPIYLRL----AHRP------QAYACALIGIFSLFQAYPSF-GDFGFFLSMLALHPKTIMTIENRFVYV-LGLGVATCMLPVMWFLWLFPASGNANFFYNQTLVYQIFN-------TQIITAFVGATMKRDKEVDKYRVSRLKELEKS 393          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|238882708|gb|EEQ46346.1| (conserved hypothetical protein [Candida albicans WO-1])

HSP 1 Score: 80.8777 bits (198), Expect = 8.143e-14
Identity = 46/154 (29.87%), Postives = 90/154 (58.44%), Query Frame = 0
Query:  132 PVPNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAIL--LHPHPILLQQITMDVALL-TLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEV 282
            P+PN+GLWWY+  E+F  + S++ +VF  + ++++ P   R     + K +   L   F  V+  +  +  + P+PI L  + + ++LL  L+ T++     K  + G+ + + L+L+PI  Y+W+   +GNAN+ Y  TL+W A++ L+L+++
Sbjct:  121 PIPNIGLWWYIFIEMFENYTSFYLIVFNVYTWIFILPFTIRFFQYKNNK-ITSLLGDSFLAVILCLCWISFIKPYPI-LGDLGIVLSLLPILNDTIVQYCKLK-YITGMTLIIGLLLAPIFYYIWIVLGTGNANFFYSITLIWGAIHGLILMDL 271          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|970634329|gb|KUF79618.1| (Phosphatidylinositol glycan anchor biosynthesis class U protein [Phytophthora nicotianae])

HSP 1 Score: 81.6481 bits (200), Expect = 9.195e-14
Identity = 51/180 (28.33%), Postives = 87/180 (48.33%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKK 313
            PN+G++WY   EVF +F  YF  V   HP +Y+ P+  R+    + +P      + +   + GI  L   +P         +++L +HP  +M + ++ + + +G+GV   + P+M +LWL   SGNAN+ Y QTLV+   N       T ++         R +  D+ R S     +K
Sbjct:  242 PNIGIFWYFFMEVFDRFIPYFLFVLHLHPVIYIVPIYLRL----AHRP------QAYACALIGIFSLFQAYPSF-GDFGFFLSMLAMHPKTIMTIENRFVYV-LGLGVATCMLPVMWFLWLFPASGNANFFYNQTLVYQIFN-------TQIITAFVGATMKRDKDVDKYRASRLKQLEK 402          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|673030312|ref|XP_008869117.1| (hypothetical protein H310_06008 [Aphanomyces invadans] >gi|574475512|gb|ETW02512.1| hypothetical protein H310_06008 [Aphanomyces invadans])

HSP 1 Score: 81.6481 bits (200), Expect = 1.120e-13
Identity = 44/138 (31.88%), Postives = 77/138 (55.80%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVW 271
            PN+G++WY   E+F +F  YF  +   HP++Y+ PL  R+     ++PL      ++  ++  +  L  P+P  +  I   +    +HP+ ++ + +K  +L  G+ V  VL P+M +LWL   SGNAN+ Y QT+V+
Sbjct:  281 PNIGIFWYFFMELFDRFQPYFLFLLHVHPYVYIAPLYIRL----RSRPL------VYATILLALVSLFQPYPA-MGDIGFVMTFFIIHPSSIIGMNNK-FVLATGLVVASVLMPVMGFLWLYPGSGNANFFYNQTIVF 406          
BLAST of EWM30401.1 vs. NCBI_GenBank
Match: gi|570316296|gb|ETO64244.1| (hypothetical protein F444_18181 [Phytophthora parasitica P1976] >gi|570316297|gb|ETO64245.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570316298|gb|ETO64246.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 81.2629 bits (199), Expect = 1.360e-13
Identity = 51/180 (28.33%), Postives = 87/180 (48.33%), Query Frame = 0
Query:  134 PNMGLWWYVMAEVFAQFDSYFRLVFAAHPFLYVPPLAFRVLTSGSAKPLPRRLLRLFFMVMAGIAILLHPHPILLQQITMDVALLTLHPTLLMALPSKILLLGVGMGVPLVLSPIMSYLWLDARSGNANYLYFQTLVWSALNALLLLEVTVVLVREAARAEGRGQRKDRRRESHQGNNKK 313
            PN+G++WY   EVF +F  YF  V   HP +Y+ P+  R+    + +P      + +   + GI  L   +P         +++L +HP  +M + ++ + + +G+GV   + P+M +LWL   SGNAN+ Y QTLV+   N       T ++         R +  D+ R S     +K
Sbjct:  271 PNIGIFWYFFMEVFDRFIPYFLFVLHLHPVIYIVPIYLRL----AHRP------QAYACALIGIFSLFQAYPSF-GDFGFFLSMLAMHPKTIMTIENRFVYV-LGLGVATCMLPVMWFLWLFPASGNANFFYNQTLVYQIFN-------TQIITAFVGATMKRDKDVDKYRASRLKQLEK 431          
The following BLAST results are available for this feature:
BLAST of EWM30401.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113061|gb|EWM30401.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|698787538|ref|XP_009826801.1|7.559e-1933.15hypothetical protein H257_04115 [Aphanomyces astac... [more]
gi|298709637|emb|CBJ31446.1|6.717e-1534.59conserved unknown protein [Ectocarpus siliculosus][more]
gi|953499593|emb|CEG39019.1|1.521e-1429.83gpi transamidase subunit pig-u family protein [Pla... [more]
gi|1173960959|gb|OQS07039.1|2.638e-1430.06hypothetical protein THRCLA_00956 [Thraustotheca c... [more]
gi|301109325|ref|XP_002903743.1|5.628e-1429.28conserved hypothetical protein [Phytophthora infes... [more]
gi|238882708|gb|EEQ46346.1|8.143e-1429.87conserved hypothetical protein [Candida albicans W... [more]
gi|970634329|gb|KUF79618.1|9.195e-1428.33Phosphatidylinositol glycan anchor biosynthesis cl... [more]
gi|673030312|ref|XP_008869117.1|1.120e-1331.88hypothetical protein H310_06008 [Aphanomyces invad... [more]
gi|570316296|gb|ETO64244.1|1.360e-1328.33hypothetical protein F444_18181 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna289rna289Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications