EWM27785.1, cds2887 (CDS) Nannochloropsis gaditana

Overview
NameEWM27785.1
Unique Namecds2887
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:198156..198231 -
Alignment locationCM002460.1:197963..198028 -
Alignment locationCM002460.1:197558..197810 -
Alignment locationCM002460.1:197342..197401 -
Alignment locationCM002460.1:196975..197194 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27785.1
Producthistone h3
Orig transcript idgnl|cribi|Naga_100605g3.3153.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:198156..198231 -
CM002460.1supercontigCM002460.1:197963..198028 -
CM002460.1supercontigCM002460.1:197558..197810 -
CM002460.1supercontigCM002460.1:197342..197401 -
CM002460.1supercontigCM002460.1:196975..197194 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR000164Histone_H3/CENP-A
Homology
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|585110075|gb|EWM27785.1| (histone h3 [Nannochloropsis gaditana])

HSP 1 Score: 450.284 bits (1157), Expect = 5.864e-160
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI 224
            MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI
Sbjct:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI 224          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|553178605|ref|XP_005852580.1| (histone H3 [Nannochloropsis gaditana CCMP526] >gi|422295955|gb|EKU23254.1| histone H3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.899 bits (629), Expect = 5.237e-81
Identity = 129/152 (84.87%), Postives = 130/152 (85.53%), Query Frame = 0
Query:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
            MARMKTAKGTLGRGIVGGKGTSPRK                      DEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLR+
Sbjct:    1 MARMKTAKGTLGRGIVGGKGTSPRK----------------------DEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 130          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|1173929726|gb|OQR82908.1| (histone H3 variant [Achlya hypogyna])

HSP 1 Score: 160.614 bits (405), Expect = 3.974e-47
Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 0
Query:   31 ASPARGGAGAERGKDKGDEEPKK-RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
            +SPA+     E+   K  E  KK RR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG  R+H
Sbjct:    2 SSPAQRQRKPEKTTRKAPEVAKKGRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLHYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 123          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|669162834|ref|XP_008616979.1| (histone H3-like centromeric protein A [Saprolegnia diclina VS20] >gi|530731433|gb|EQC29675.1| histone H3-like centromeric protein A [Saprolegnia diclina VS20])

HSP 1 Score: 159.458 bits (402), Expect = 1.097e-46
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0
Query:   52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
            KKRR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG  R+H
Sbjct:   22 KKRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 121          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|325186909|emb|CCA21453.1| (histone H3 putative [Albugo laibachii Nc14])

HSP 1 Score: 159.844 bits (403), Expect = 3.405e-46
Identity = 82/130 (63.08%), Postives = 101/130 (77.69%), Query Frame = 0
Query:   19 KGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 148
            K ++ +K PRK ++P R     + G  K    PK RR RPG  ALREIR YQR+TELL+R+LPFARLVR++Q + + + +RWQA +LLALQEAAEAHLV LFEDANLCAIH+KRVT+M KD+QLARRIRG
Sbjct:   29 KTSTVKKRPRK-STPTRTAPSIKGGASKAKTTPK-RRFRPGSVALREIRYYQRSTELLIRKLPFARLVRDIQMQYANRPFRWQAEALLALQEAAEAHLVRLFEDANLCAIHSKRVTLMVKDIQLARRIRG 156          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|813192558|ref|XP_012208161.1| (hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65] >gi|641526831|gb|KDO21164.1| hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 158.688 bits (400), Expect = 3.457e-46
Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0
Query:   52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
            KKRR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q   +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG  R+H
Sbjct:   27 KKRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 126          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|635371023|emb|CCI40926.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 159.458 bits (402), Expect = 4.822e-46
Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 0
Query:   19 KGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 148
            K TS +K PRK ++P R     + G  K +   +KRR RPG  ALREIR YQR+TELL+R+LPFARLVR++Q + + + +RWQA +LLALQEAAEAHLV LFEDANLCAIH+KRVT+M KD+QLARRIRG
Sbjct:   29 KSTSVKKRPRK-STPMRTAPPIKGGASKTNTT-QKRRFRPGSVALREIRYYQRSTELLIRKLPFARLVRDIQMQYANRPFRWQAEALLALQEAAEAHLVRLFEDANLCAIHSKRVTLMVKDIQLARRIRG 156          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|219130397|ref|XP_002185353.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403268|gb|EEC43222.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 155.606 bits (392), Expect = 2.776e-45
Identity = 72/101 (71.29%), Postives = 88/101 (87.13%), Query Frame = 0
Query:   52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
            +KRR RPG +AL+EI+ YQ++T+LL+RRLPFARLVRE+Q E+S + YRWQ  ++LALQEA+EAHLV LFED NLCA+H KRVTIMPKDMQLARRIRG  R+
Sbjct:    4 RKRRMRPGQKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGTAILALQEASEAHLVSLFEDTNLCALHGKRVTIMPKDMQLARRIRGQTRE 104          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|397633948|gb|EJK71201.1| (hypothetical protein THAOC_07381 [Thalassiosira oceanica])

HSP 1 Score: 156.762 bits (395), Expect = 3.480e-45
Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 0
Query:   24 RKVPRKQASPARGGAGAERGKDKGDEEPK-KRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
            R  PR +A  AR  +G  RG      + + KRR RPG +ALREIRQYQ +T LLLRRLPFARLVRE+Q  ++ + YRWQ +++LALQEAAEAHLV LFED+NLCAIH KRVTIMPKDMQLARRIRG  R+
Sbjct:   20 RARPRDEAE-ARLASGRPRGPTSAKPKVRRKRRMRPGEKALREIRQYQSSTTLLLRRLPFARLVREIQFGMTRQPYRWQGSAILALQEAAEAHLVSLFEDSNLCAIHGKRVTIMPKDMQLARRIRGIYRE 148          
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|1210529908|dbj|GAX11441.1| (hypothetical protein FisN_22Lh125 [Fistulifera solaris])

HSP 1 Score: 155.606 bits (392), Expect = 7.879e-45
Identity = 89/152 (58.55%), Postives = 102/152 (67.11%), Query Frame = 0
Query:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
            M R KT     GRG + G+G S            RGG   E    +     + RR RPG RALREIR++Q +T+LLLRRLPFARLVRE+Q  +S   YRWQ  ++LALQEAAEAHLV LFEDAN CAIH KRVTIMPKDMQLARRIRG  R+
Sbjct:    1 MVRHKTQARRGGRGSLVGQGRS------------RGGPTFEEAAQRQPRVKRTRRMRPGERALREIRKFQGSTDLLLRRLPFARLVREIQQGMSRTAYRWQGTAILALQEAAEAHLVGLFEDANHCAIHGKRVTIMPKDMQLARRIRGWNRE 140          
The following BLAST results are available for this feature:
BLAST of EWM27785.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110075|gb|EWM27785.1|5.864e-160100.00histone h3 [Nannochloropsis gaditana][more]
gi|553178605|ref|XP_005852580.1|5.237e-8184.87histone H3 [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|1173929726|gb|OQR82908.1|3.974e-4768.55histone H3 variant [Achlya hypogyna][more]
gi|669162834|ref|XP_008616979.1|1.097e-4677.45histone H3-like centromeric protein A [Saprolegnia... [more]
gi|325186909|emb|CCA21453.1|3.405e-4663.08histone H3 putative [Albugo laibachii Nc14][more]
gi|813192558|ref|XP_012208161.1|3.457e-4677.45hypothetical protein SPRG_12945 [Saprolegnia paras... [more]
gi|635371023|emb|CCI40926.1|4.822e-4663.85unnamed protein product [Albugo candida][more]
gi|219130397|ref|XP_002185353.1|2.776e-4571.29predicted protein, partial [Phaeodactylum tricornu... [more]
gi|397633948|gb|EJK71201.1|3.480e-4565.38hypothetical protein THAOC_07381 [Thalassiosira oc... [more]
gi|1210529908|dbj|GAX11441.1|7.879e-4558.55hypothetical protein FisN_22Lh125 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2895rna2895Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications