EWM27785.1, cds2887 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|585110075|gb|EWM27785.1| (histone h3 [Nannochloropsis gaditana]) HSP 1 Score: 450.284 bits (1157), Expect = 5.864e-160 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query: 1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI 224
MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI
Sbjct: 1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDHPPPHIVPFIFKLSFVPPLLRVLRRERPGREEEEEGGAYGGGEGGQGRRVANSTCHGHLCLMPVMRMGTLDI 224
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|553178605|ref|XP_005852580.1| (histone H3 [Nannochloropsis gaditana CCMP526] >gi|422295955|gb|EKU23254.1| histone H3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 246.899 bits (629), Expect = 5.237e-81 Identity = 129/152 (84.87%), Postives = 130/152 (85.53%), Query Frame = 0
Query: 1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
MARMKTAKGTLGRGIVGGKGTSPRK DEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLR+
Sbjct: 1 MARMKTAKGTLGRGIVGGKGTSPRK----------------------DEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 130
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|1173929726|gb|OQR82908.1| (histone H3 variant [Achlya hypogyna]) HSP 1 Score: 160.614 bits (405), Expect = 3.974e-47 Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 0
Query: 31 ASPARGGAGAERGKDKGDEEPKK-RRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
+SPA+ E+ K E KK RR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG R+H
Sbjct: 2 SSPAQRQRKPEKTTRKAPEVAKKGRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLHYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 123
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|669162834|ref|XP_008616979.1| (histone H3-like centromeric protein A [Saprolegnia diclina VS20] >gi|530731433|gb|EQC29675.1| histone H3-like centromeric protein A [Saprolegnia diclina VS20]) HSP 1 Score: 159.458 bits (402), Expect = 1.097e-46 Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0
Query: 52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
KKRR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG R+H
Sbjct: 22 KKRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 121
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|325186909|emb|CCA21453.1| (histone H3 putative [Albugo laibachii Nc14]) HSP 1 Score: 159.844 bits (403), Expect = 3.405e-46 Identity = 82/130 (63.08%), Postives = 101/130 (77.69%), Query Frame = 0
Query: 19 KGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 148
K ++ +K PRK ++P R + G K PK RR RPG ALREIR YQR+TELL+R+LPFARLVR++Q + + + +RWQA +LLALQEAAEAHLV LFEDANLCAIH+KRVT+M KD+QLARRIRG
Sbjct: 29 KTSTVKKRPRK-STPTRTAPSIKGGASKAKTTPK-RRFRPGSVALREIRYYQRSTELLIRKLPFARLVRDIQMQYANRPFRWQAEALLALQEAAEAHLVRLFEDANLCAIHSKRVTLMVKDIQLARRIRG 156
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|813192558|ref|XP_012208161.1| (hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65] >gi|641526831|gb|KDO21164.1| hypothetical protein SPRG_12945 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 158.688 bits (400), Expect = 3.457e-46 Identity = 79/102 (77.45%), Postives = 91/102 (89.22%), Query Frame = 0
Query: 52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRDH 153
KKRR +PG+R+L EIR+YQR+TELLLRRLPFARLVRE+Q +T Q+RWQA +LLALQEAAEAHLV +FEDANLCAIHAKRVTIM KD+QLARRIRG R+H
Sbjct: 27 KKRRYKPGVRSLLEIRRYQRSTELLLRRLPFARLVREIQLNYATVQFRWQAEALLALQEAAEAHLVRVFEDANLCAIHAKRVTIMVKDIQLARRIRG--RNH 126
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|635371023|emb|CCI40926.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 159.458 bits (402), Expect = 4.822e-46 Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 0
Query: 19 KGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRG 148
K TS +K PRK ++P R + G K + +KRR RPG ALREIR YQR+TELL+R+LPFARLVR++Q + + + +RWQA +LLALQEAAEAHLV LFEDANLCAIH+KRVT+M KD+QLARRIRG
Sbjct: 29 KSTSVKKRPRK-STPMRTAPPIKGGASKTNTT-QKRRFRPGSVALREIRYYQRSTELLIRKLPFARLVRDIQMQYANRPFRWQAEALLALQEAAEAHLVRLFEDANLCAIHSKRVTLMVKDIQLARRIRG 156
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|219130397|ref|XP_002185353.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403268|gb|EEC43222.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 155.606 bits (392), Expect = 2.776e-45 Identity = 72/101 (71.29%), Postives = 88/101 (87.13%), Query Frame = 0
Query: 52 KKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
+KRR RPG +AL+EI+ YQ++T+LL+RRLPFARLVRE+Q E+S + YRWQ ++LALQEA+EAHLV LFED NLCA+H KRVTIMPKDMQLARRIRG R+
Sbjct: 4 RKRRMRPGQKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGTAILALQEASEAHLVSLFEDTNLCALHGKRVTIMPKDMQLARRIRGQTRE 104
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|397633948|gb|EJK71201.1| (hypothetical protein THAOC_07381 [Thalassiosira oceanica]) HSP 1 Score: 156.762 bits (395), Expect = 3.480e-45 Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 0
Query: 24 RKVPRKQASPARGGAGAERGKDKGDEEPK-KRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
R PR +A AR +G RG + + KRR RPG +ALREIRQYQ +T LLLRRLPFARLVRE+Q ++ + YRWQ +++LALQEAAEAHLV LFED+NLCAIH KRVTIMPKDMQLARRIRG R+
Sbjct: 20 RARPRDEAE-ARLASGRPRGPTSAKPKVRRKRRMRPGEKALREIRQYQSSTTLLLRRLPFARLVREIQFGMTRQPYRWQGSAILALQEAAEAHLVSLFEDSNLCAIHGKRVTIMPKDMQLARRIRGIYRE 148
BLAST of EWM27785.1 vs. NCBI_GenBank
Match: gi|1210529908|dbj|GAX11441.1| (hypothetical protein FisN_22Lh125 [Fistulifera solaris]) HSP 1 Score: 155.606 bits (392), Expect = 7.879e-45 Identity = 89/152 (58.55%), Postives = 102/152 (67.11%), Query Frame = 0
Query: 1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEISTKQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152
M R KT GRG + G+G S RGG E + + RR RPG RALREIR++Q +T+LLLRRLPFARLVRE+Q +S YRWQ ++LALQEAAEAHLV LFEDAN CAIH KRVTIMPKDMQLARRIRG R+
Sbjct: 1 MVRHKTQARRGGRGSLVGQGRS------------RGGPTFEEAAQRQPRVKRTRRMRPGERALREIRKFQGSTDLLLRRLPFARLVREIQQGMSRTAYRWQGTAILALQEAAEAHLVGLFEDANHCAIHGKRVTIMPKDMQLARRIRGWNRE 140 The following BLAST results are available for this feature:
BLAST of EWM27785.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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