EWM27789.1, cds2885 (CDS) Nannochloropsis gaditana

Overview
NameEWM27789.1
Unique Namecds2885
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:191364..191413 +
Alignment locationCM002460.1:191535..191578 +
Alignment locationCM002460.1:191749..191994 +
Alignment locationCM002460.1:192128..192336 +

Link to JBrowse

Properties
Property NameValue
End range.
End range192336
Protein idEWM27789.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101491g2.2448.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:191364..191413 +
CM002460.1supercontigCM002460.1:191535..191578 +
CM002460.1supercontigCM002460.1:191749..191994 +
CM002460.1supercontigCM002460.1:192128..192336 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of EWM27789.1 vs. NCBI_GenBank
Match: gi|585110082|gb|EWM27789.1| (hypothetical protein Naga_101491g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 357.836 bits (917), Expect = 8.495e-125
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MELRVSWGFWCRVDSVIRLRRHFSSPSWACPGSFATLVVFEPGSVRHRQIRLGSSLSVPLVERDTIMASFPPSNRRATPARVMVVIFSSVLILLAGPVGDAWRMPSIAPGQSTGVAKTSRWAGFLGNFARRSPSISTSPSLPPSLPASSLGPLSAATMAPPSTLSPAAQKKKDAVAAYVKSRG 183
            MELRVSWGFWCRVDSVIRLRRHFSSPSWACPGSFATLVVFEPGSVRHRQIRLGSSLSVPLVERDTIMASFPPSNRRATPARVMVVIFSSVLILLAGPVGDAWRMPSIAPGQSTGVAKTSRWAGFLGNFARRSPSISTSPSLPPSLPASSLGPLSAATMAPPSTLSPAAQKKKDAVAAYVKSRG
Sbjct:    1 MELRVSWGFWCRVDSVIRLRRHFSSPSWACPGSFATLVVFEPGSVRHRQIRLGSSLSVPLVERDTIMASFPPSNRRATPARVMVVIFSSVLILLAGPVGDAWRMPSIAPGQSTGVAKTSRWAGFLGNFARRSPSISTSPSLPPSLPASSLGPLSAATMAPPSTLSPAAQKKKDAVAAYVKSRG 183
[Close]
BLAST of EWM27789.1 vs. NCBI_GenBank
Match: gi|578896496|gb|AHI17198.1| (acetyl-CoA carboxylase [Nannochloropsis oculata])

HSP 1 Score: 108.997 bits (271), Expect = 3.160e-24
Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 0 
Query:   69 SFPPSNRRATPARVMVVIFSSVLILLAGPVGDAWRMPSIAPGQSTGVAKTSRWAGFLGNFARRSPSISTSPSLPPSLPASSLGPLSAATMAPPSTLSPAAQKKKDAVAAYVKSRG 183
            + P SNRRA  A   +V  SS+L+LL GPV +AWR+P    G+S+GV K     GFLG F+  +PS S  PS       S++GPLSAATMAPP+ LSP AQKKKDAVAAYVKSRG
Sbjct:    4 TIPSSNRRAMRAGAALVAVSSILVLLMGPVAEAWRVPGFGQGRSSGVTKPVHAPGFLGRFS--TPS-SLGPSSASCPTISAVGPLSAATMAPPA-LSPEAQKKKDAVAAYVKSRG 114
The following BLAST results are available for this feature:
BLAST of EWM27789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110082|gb|EWM27789.1|8.495e-125100.00hypothetical protein Naga_101491g2, partial [Nanno... [more]
gi|578896496|gb|AHI17198.1|3.160e-2457.39acetyl-CoA carboxylase [Nannochloropsis oculata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2893rna2893Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications