EWM27792.1, cds2878 (CDS) Nannochloropsis gaditana

Overview
NameEWM27792.1
Unique Namecds2878
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:170983..171726 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27792.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100324g5.673.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:170983..171726 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|585110088|gb|EWM27792.1| (hypothetical protein Naga_100324g5 [Nannochloropsis gaditana])

HSP 1 Score: 498.434 bits (1282), Expect = 2.673e-178
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MPRSLFSSLLLSALLIGHIHAFLLPAITRNMGQSIVFCASLASVDVSSPPSMSSTSSSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEMRR 247
            MPRSLFSSLLLSALLIGHIHAFLLPAITRNMGQSIVFCASLASVDVSSPPSMSSTSSSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEMRR
Sbjct:    1 MPRSLFSSLLLSALLIGHIHAFLLPAITRNMGQSIVFCASLASVDVSSPPSMSSTSSSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEMRR 247          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|551675832|ref|XP_005840670.1| (hypothetical protein GUITHDRAFT_100666 [Guillardia theta CCMP2712] >gi|428184836|gb|EKX53690.1| hypothetical protein GUITHDRAFT_100666 [Guillardia theta CCMP2712])

HSP 1 Score: 136.732 bits (343), Expect = 1.502e-36
Identity = 81/190 (42.63%), Postives = 104/190 (54.74%), Query Frame = 0
Query:   57 SSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAARPKWLVTYAERKF-DSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADE-PLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWAN-GKDSLMWGDFLA 243
            SS      E E  KIFGRLA+K IF D SAG CCHSGCD+CEWRY FDIM+AARPKW+  Y+E +F D   H AKW+ LF+             DE+    +T           L ERL  + F  PLGP+  +TA +  L+ E     W K+     K   +T + M  RLR+ A  G++ +MW DF+A
Sbjct:    2 SSSTGQVEEVELVKIFGRLAEKMIFGDGSAGACCHSGCDDCEWRYSFDIMQAARPKWIPCYSENRFEDGREHIAKWSKLFN-------------DENTITRDT-----------LYERLREMKFEMPLGPSGYMTASQAELKDEALDLFWAKISANKDK---VTPKQMSIRLRKMATPGEEGVMWSDFVA 164          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|1210519666|dbj|GAX21435.1| (hypothetical protein FisN_10Hh013 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 4.193e-22
Identity = 73/239 (30.54%), Postives = 112/239 (46.86%), Query Frame = 0
Query:    9 LLLSALLIGHIHAFLLPAITRNMGQSIVFCASLASVDVSSPPSMSSTSSSPASIPSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKW-TALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDF 241
            LL++A LIG   AF  P + +  G          S  +SS     ++ ++ A  P EA   KIFGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+ +Y  R+ +   H+ KW T +F                      T GP    S     E++  + ++ PLG      +    +++ A+  + ++L  G +   LT   M +RL+E A+G++ L W  F
Sbjct:    7 LLMAAALIGDGDAFT-PILKQGYG----------SRKMSSTLLAETSQAAAAVSPKEA--VKIFGRLAEKYIMLDSSAGMCCYSACADCEFRLPGGGYRMADQSAARPKWIPSYETRQANGKEHSTKWSTKIF----------------------TEGPA--VSMEEFVEKIQQIEYVPPLGGPYVGASSAAFDNDQALQSFFEILSNGKEK--LTRHRMSQRLKELADGEEGLTWAAF 206          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|219121388|ref|XP_002185919.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582768|gb|ACI65389.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.3673 bits (246), Expect = 5.399e-22
Identity = 73/224 (32.59%), Postives = 103/224 (45.98%), Query Frame = 0
Query:   35 IVFCASLASVDVSSPPSMSSTSSSPASIP-----------SEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPL-GPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDF 241
            +VFC  L +   S  PS++   S+  S+             + E  K+FGRLA+K I +D+SAG CC+S C +CE+R     Y      AARPKW+ +Y ER  +   HT KW+                  E +F     GP       V   +L AL +  PL GP V  +A    ++ T   L+D L+  G     LT   M  RL+E A+G++ L W  F
Sbjct:    5 LVFC--LFAGATSFYPSLTHIQSNRISVHLFSAETSDVAIDQKEAVKVFGRLAEKYIMLDDSAGMCCYSACADCEYRLPGGGYRMADQSAARPKWIPSYTERAANDRQHTTKWS------------------EQLF---VDGPALTKEEFV--TKLKALEYAPPLGGPYVGASAAALDDTSTVAHLFDILVAEGKDK--LTKHRMSVRLKELADGEEGLTWAGF 201          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|1210523843|dbj|GAX17167.1| (hypothetical protein FisN_10Lh013 [Fistulifera solaris])

HSP 1 Score: 93.5893 bits (231), Expect = 6.986e-20
Identity = 65/206 (31.55%), Postives = 100/206 (48.54%), Query Frame = 0
Query:   42 ASVDVSSPPSMSSTSSSPASI-PSEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDF 241
             S  V+S   ++ T+ + A++ P EA   KIFGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+ +Y  R+ +   H+ KW             ST +  E        GP    S     E++  L ++ PLG      +    + + A+  + ++L  G +   LT   M +RL+E A+G++ L W  F
Sbjct:    9 GSQKVASALLLADTNQAAAAVSPKEA--VKIFGRLAEKYIMLDSSAGMCCYSACTDCEFRLPGGGYRMADQSAARPKWIPSYETRQANGKEHSTKW-------------STEIFAE--------GPA--VSMEEFVEKVQQLEYVPPLGGPYVGASSAAFDDDQALQSFFEILSNGKEK--LTRHRMGQRLKELADGEEGLTWAAF 187          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|397648135|gb|EJK78004.1| (hypothetical protein THAOC_00121 [Thalassiosira oceanica])

HSP 1 Score: 92.8189 bits (229), Expect = 3.370e-19
Identity = 64/194 (32.99%), Postives = 96/194 (49.48%), Query Frame = 0
Query:   57 SSPASIPSE-AEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDA--HTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPL-GPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDF 241
            ++PA+I ++  E  K+FGRLA+K I +D SAG CC+S C +CE+R     Y      AARPKW+  Y +R F++    HT KW+       S   +  PV  ++ F                 +RL +L F  PL GP +  +A    +  +A  L+D L     K   LT   M + +++ ANG++ L W  F
Sbjct:   66 ATPAAIETDPKEAVKLFGRLAEKYIMLDASAGMCCYSACTDCEYREPGGGYRMADQSAARPKWIPCYEDRNFEAQGKQHTTKWS-------SEIFTDGPVVTKEQF----------------VDRLISLEFKPPLGGPYLAASAAAIEDESSAAALFDVLAGEKEK---LTRFRMGKAMKDLANGEEGLTWAMF 233          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|223993891|ref|XP_002286629.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977944|gb|EED96270.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.7373 bits (221), Expect = 3.370e-18
Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 0
Query:   67 EWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDA-HTAKW-TALF-DPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVW-LWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEM 245
            E  K+FGRLA+K I +D SAG CC+SGC +CE+R     Y      ++RPKW+ +Y  R+F+S   HT KW T +F D PA        V+ E+  +                 R+  + F  PLG      +   +E E+A   L+D L     K   LT   M + ++  ANG++ L W +F A +
Sbjct:   59 EAVKLFGRLAEKYIMLDASAGMCCYSGCTDCEFREPGGGYRMADQSSSRPKWIPSYDHREFNSGKEHTTKWSTEIFVDGPA--------VTKEEFVS-----------------RVINMQFAPPLGGPYLAASAATIEDESAAASLFDILAGEKEK---LTKHRMGKEMKSLANGEEGLTWANFSAAL 218          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|922858818|gb|KOO26906.1| (hypothetical protein Ctob_004425 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 88.1965 bits (217), Expect = 1.477e-17
Identity = 64/196 (32.65%), Postives = 94/196 (47.96%), Query Frame = 0
Query:   64 SEAEWAKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDAHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVT-ADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREW------------ANGKDSLMWGDF 241
            S  + AKIFGRLA+K +++D + G CCHS C +CEWR     Y +D+M+A   KWL  Y  R F  +        LF      P ++  VS  D F+T                RLSA+P+   +GP  TV  A+ P ++  A+W +  L    ++ A L+A  M +RL+                G DS++W +F
Sbjct:   42 STVDAAKIFGRLAEKTLYLDATVGACCHSACSDCEWRTPGGGYRWDVMKAQVAKWLPCYLTRDFADE-------PLF------PGAAATVSRAD-FDT----------------RLSAMPYSGAMGPKGTVKEAELPAQALDAIWAF--LCDGDAQCAELSASAMLQRLQSMSLLEGIERAGAIGQGPDSIVWNEF 205          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|1072232880|gb|OEU17611.1| (hypothetical protein FRACYDRAFT_184733 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.4185 bits (202), Expect = 2.245e-15
Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 0
Query:   69 AKIFGRLADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSDA--HTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPL-GPTVTVTADEPLESETAVWLWDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEM 245
             K+FGRLA+K I +DES G CC+S C +CE+R     Y      A+RPKW+  Y ER F +    HTAKW              + + D  +F T+              E +  L F  PL GP V+ +A    +   A +L+D +L  G +   LT   M   L + + G+  L W +F A +
Sbjct:   59 VKLFGRLAEKYIMLDESGGMCCYSACKDCEFRLPGGGYRMADQSASRPKWIPVYEERVFANQGKEHTAKW-------------RSSIFDGKLFVTKDE----------FVESILELDFATPLGGPFVSKSAGTLEDPTGAEYLFD-ILAEGKEK--LTRHKMHLSLTKLSEGEAGLTWPNFSAAL 217          
BLAST of EWM27792.1 vs. NCBI_GenBank
Match: gi|551598070|ref|XP_005781105.1| (hypothetical protein EMIHUDRAFT_234836 [Emiliania huxleyi CCMP1516] >gi|485633816|gb|EOD28676.1| hypothetical protein EMIHUDRAFT_234836 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.707 bits (169), Expect = 1.798e-10
Identity = 49/187 (26.20%), Postives = 74/187 (39.57%), Query Frame = 0
Query:   75 LADKAIFMDESAGQCCHSGCDNCEWR-----YDFDIMRAARPKWLVTYAERKFDSD--AHTAKWTALFDPPASSPTSSTPVSDEDMFNTETAGPTSLASPTVLAERLSALPFLAPLGPTVTVTADEPLESETAVWL-------WDKLLPPGSKSAVLTARLMERRLREWANGKDSLMWGDFLAEMRR 247
            LA+  + +D   G CCHS C +CEWR     Y FD+++A +PKW+  Y  R F  +   H  +W +   P     T +                          E L+ L F  P+GP  +V AD  +    A  L        D L P G+++ +       +       G D L+W +F  +  R
Sbjct:   16 LAEPLVHLDPEVGACCHSACSDCEWRLPDGGYRFDVLKATKPKWVPCYLRRDFGDERGCHEPRWASALFPGGGEVTRAQ-----------------------FGEALAGLGFEMPMGPRGSVGADGGVPESAADALWAWLAGDGDALTPEGARTRLQAMAEDPQAEGAVGEGPDHLVWKEFAKDAAR 179          
The following BLAST results are available for this feature:
BLAST of EWM27792.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110088|gb|EWM27792.1|2.673e-178100.00hypothetical protein Naga_100324g5 [Nannochloropsi... [more]
gi|551675832|ref|XP_005840670.1|1.502e-3642.63hypothetical protein GUITHDRAFT_100666 [Guillardia... [more]
gi|1210519666|dbj|GAX21435.1|4.193e-2230.54hypothetical protein FisN_10Hh013 [Fistulifera sol... [more]
gi|219121388|ref|XP_002185919.1|5.399e-2232.59predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210523843|dbj|GAX17167.1|6.986e-2031.55hypothetical protein FisN_10Lh013 [Fistulifera sol... [more]
gi|397648135|gb|EJK78004.1|3.370e-1932.99hypothetical protein THAOC_00121 [Thalassiosira oc... [more]
gi|223993891|ref|XP_002286629.1|3.370e-1833.51predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|922858818|gb|KOO26906.1|1.477e-1732.65hypothetical protein Ctob_004425 [Chrysochromulina... [more]
gi|1072232880|gb|OEU17611.1|2.245e-1532.43hypothetical protein FRACYDRAFT_184733 [Fragilario... [more]
gi|551598070|ref|XP_005781105.1|1.798e-1026.20hypothetical protein EMIHUDRAFT_234836 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2886rna2886Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications