EWM27816.1, cds2857 (CDS) Nannochloropsis gaditana

Overview
NameEWM27816.1
Unique Namecds2857
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:108340..109029 +

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Properties
Property NameValue
Protein idEWM27816.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102097g1.7421.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:108340..109029 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27816.1 vs. NCBI_GenBank
Match: gi|585110124|gb|EWM27816.1| (hypothetical protein Naga_102097g1 [Nannochloropsis gaditana])

HSP 1 Score: 437.958 bits (1125), Expect = 6.447e-155
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0 
Query:    1 MSAGSCDLKLLRVLQTLMGLSEKEAEREEDDEEEMEGAGAGRLPGHGEQAEGGGEAGPSPSLPTSTSPSLPPSTSPSPASHMGVVLLRKLQLEPLWESLSECLSVVAALEGISEGRGSSGEGGASPGEALGRESTEPLDGEGGDGEEGEGGGRKASLTTSSSMAGLLAKMLPLLEAFFLCNAWEVMTAHKKKQKEEARRESWGPRERERERARERRRAQQLQERERRGV 229
            MSAGSCDLKLLRVLQTLMGLSEKEAEREEDDEEEMEGAGAGRLPGHGEQAEGGGEAGPSPSLPTSTSPSLPPSTSPSPASHMGVVLLRKLQLEPLWESLSECLSVVAALEGISEGRGSSGEGGASPGEALGRESTEPLDGEGGDGEEGEGGGRKASLTTSSSMAGLLAKMLPLLEAFFLCNAWEVMTAHKKKQKEEARRESWGPRERERERARERRRAQQLQERERRGV
Sbjct:    1 MSAGSCDLKLLRVLQTLMGLSEKEAEREEDDEEEMEGAGAGRLPGHGEQAEGGGEAGPSPSLPTSTSPSLPPSTSPSPASHMGVVLLRKLQLEPLWESLSECLSVVAALEGISEGRGSSGEGGASPGEALGRESTEPLDGEGGDGEEGEGGGRKASLTTSSSMAGLLAKMLPLLEAFFLCNAWEVMTAHKKKQKEEARRESWGPRERERERARERRRAQQLQERERRGV 229
[Close]
BLAST of EWM27816.1 vs. NCBI_GenBank
Match: gi|219119760|ref|XP_002180633.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408106|gb|EEC48041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 63.929 bits (154), Expect = 3.826e-8
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:   84 VVLLRKLQLEPLWESLSECLSVVAALEGISEGRGSSGEGGASPGEALGRESTEPLDGEGGDGEEGEGGGRKASLTTSSSMAGLLAKMLPLLEAFFLCNA 182
            V +LR+++ + LW  L+ CL VV  LEG+ +  G   E G         E+T+  D E G  +E     +K      +S AGLL + LP +EAFF+ NA
Sbjct: 3754 VHILRQIEFDDLWNELNLCLKVVQVLEGVKDANGKENETGL--------ENTDRNDDEDGSIDENAAQTKK----LRNSAAGLLTRFLPSIEAFFVANA 3840
The following BLAST results are available for this feature:
BLAST of EWM27816.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110124|gb|EWM27816.1|6.447e-155100.00hypothetical protein Naga_102097g1 [Nannochloropsi... [more]
gi|219119760|ref|XP_002180633.1|3.826e-836.36predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2865rna2865Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications