EWM27817.1, cds2856 (CDS) Nannochloropsis gaditana

Overview
NameEWM27817.1
Unique Namecds2856
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:105983..107791 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27817.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101547g1.5983.mrna
GbkeyCDS
End range.
End range107791
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:105983..107791 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR025527DUF4414
Homology
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|585110126|gb|EWM27817.1| (hypothetical protein Naga_101547g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 1176 bits (3041), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP 603
            MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP
Sbjct:    1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP 603          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 113.62 bits (283), Expect = 2.505e-22
Identity = 89/285 (31.23%), Postives = 122/285 (42.81%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGT---LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRR-REATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGG-----GGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPA--------RTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALL 268
             DPE F  LP E+Q +   ++     L   L  S+LDP  L+ LPE +R +++ ++  ER R R+       A+P++A EMD ASF+ASL P LREEVLL     VL+SLPP+VVAEA V+RERA                              G+  GR     V        DG   G   GG G         G G     P   K          G  +VE D  +    P+          V+  ++L FL   +RP+  + + + N C S+P  R   
Sbjct: 3008 FDPEVFNSLPVEMQHDCVSQYNATQELEMQLRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQIEGDGVADPSHAEEMDTASFIASLAPGLREEVLLTADSSVLSSLPPDVVAEAQVLRERA-----------------------------SGLRDGRLFAENV--------DGAQQGNAVGGDGTDSSRLAVTGRGTVSELPSQKKRQR------TGKFKVEKDLDDTVYLPSSLFSPVCKSDVKLFIKLFFLVSPIRPQRLMQKVIQNFC-SIPSLREFF 3248          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 110.538 bits (275), Expect = 2.418e-21
Identity = 108/400 (27.00%), Postives = 156/400 (39.00%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGT---LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRR-REATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFP--------ARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVAR-----LVGEEGGEEGGEEGEE--EFPPGHMLGTGPSKMPS---------------VGMGEEEGE----------GEGAMPAEVARRIGDLLLFLCQTSPR 356
             DPE F  LP E+Q +   ++     L   L  S+LDP  L+ LPE +R +++ ++  ER R R+       A+P++A EMD ASF+ASL P LREEVLL   + VL+SLPP+VVAEA V+RERA                              G+  GR     V  T  G      G  G         G G     P   K          G  +VE D  +    P           V+  ++L FL   +RP+  + + L N C     R   L   + L         AA+ +     L  ++      +E  +   FPP  +LG  P  + +                G G                +  +P  V  R+ +++  LC+ SPR
Sbjct: 3008 FDPEVFNSLPVEMQHDCVSQYNATQELEMELRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQNEGDGAADPSHAEEMDTASFIASLAPGLREEVLLTADNSVLSSLPPDVVAEAQVLRERA-----------------------------SGLRDGRLFAESVDETQQG---NAVGVDGTVSSRLAVTGRGTVTEMPGQKKRQR------TGKFKVEKDLDDTVYLPNSLFSPVCKSDVQLFIKLFFLVSPIRPQRLMQKVLQNFCSIPTLREFFLNAFLALLNENSVRISAALEKFGLTYLPSDQWRRAMDDEFRDLSIFPPETLLGATPDALEAESFNASMTASLLRHRYGFGNTTSVAANLPSVLQFNDTTLPPIVVTRLLEMVTQLCKNSPR 3369          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|219119760|ref|XP_002180633.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408106|gb|EEC48041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.768 bits (273), Expect = 5.021e-21
Identity = 59/130 (45.38%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHG---TLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQR 127
            +D E F  LP ++Q++    +     L   L GS+LDPE L+ALPE +R EV+ +E   R +++      PA+PA A +MD ASFLAS+ PDLREE+L+   ++ LASLPP++ AEA ++RERA   H+R
Sbjct: 3168 VDMEVFNSLPVDMQQDCIDHYNGAQELVAQLDGSTLDPEVLAALPEDMRREVIEQERLARGQQDP-----PADPARAEDMDTASFLASVGPDLREEILVSADNDFLASLPPSIAAEAQILRERASAQHRR 3292          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|325179897|emb|CCA14299.1| (HECT E3 ubiquitin ligase putative [Albugo laibachii Nc14])

HSP 1 Score: 107.842 bits (268), Expect = 1.779e-20
Identity = 65/148 (43.92%), Postives = 84/148 (56.76%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGT-----------LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAG 137
            MDPE FA LPAE+Q E+  + G            L   +  S+ D E L ALP  +R EVLA E RER       +  PA+ ++A +MDNASF+ASL PDLREE+L    D  L +LP ++ AEA ++RERAV   +   Q Q A  G
Sbjct: 2394 MDPEVFASLPAEMQMEIMAQFGVPAASVPSHETQLSLDIENSNFDRETLEALPADIREEVLANERRERE------SETPADVSHAQDMDNASFVASLAPDLREEILSTCDDAFLETLPSDIRAEALILRERAVF--RSAYQTQDARRG 2533          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1160556501|ref|XP_020436147.1| (putative E3 ubiquitin-protein ligase [Polysphondylium pallidum PN500] >gi|281209862|gb|EFA84030.1| putative E3 ubiquitin-protein ligase [Polysphondylium pallidum PN500])

HSP 1 Score: 107.457 bits (267), Expect = 2.105e-20
Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRE-LAQEHGTLPTPLPGS--SLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRG---RQAQQ 133
            +DP   + LPAE++ E LA + G++      +  +++PE L+ALP+ ++NEVL +E    +RR ATA   P +  +A +MDNASFLA+LPPDLREEVL+   +  L++LPP + AEA  +RER      R    R AQQ
Sbjct: 2223 IDPTFLSALPAELRAEVLATQLGSIHQNATSNNITINPEFLAALPQDIQNEVLEQERLISQRRRATAPPPPVDITHAQDMDNASFLATLPPDLREEVLISQPEAFLSTLPPELHAEAVRLRERDRYDTYRSFIERNAQQ 2361          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|298713438|emb|CBJ33640.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.916 bits (263), Expect = 6.789e-20
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   28 LPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRA-PANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRER 120
            L  + LDPEAL+ALP  +R EVL +EAR RR REA      P +P+ A+EMDNASF+A+LPP+LR EVLL   D +L++LPPN+VAEA V+RER
Sbjct:  608 LEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNAGGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER 701          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|635371234|emb|CCI40634.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 102.834 bits (255), Expect = 6.032e-19
Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGT-------------LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVL 123
            MDPE F  LP E+Q E+  + G              L   +  S+ D E L ALP  +R EVLA    ERR REA A   PA+ ++A +MDNASF+ASL PDLREE+L    D  L +LP ++ AEA ++RERAV 
Sbjct: 2428 MDPEVFESLPPEMQMEIMAQFGVPVENETPPSRETQLNLDMENSNFDRETLEALPADIREEVLA---NERREREAVA---PADVSHAQDMDNASFVASLAPDLREEILSTCDDAFLETLPSDIRAEALILRERAVF 2557          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|397644877|gb|EJK76585.1| (hypothetical protein THAOC_01642 [Thalassiosira oceanica])

HSP 1 Score: 102.834 bits (255), Expect = 6.493e-19
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHG-TLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREA---------------------------TATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQ 130
            +DPE FA LP E+Q+E+   H  T  + +    LDP+AL+ALPE +R E +AE  ++++R ++                            A   PA+P+NA EMD ASFLA+L P+LR E+LL   +  L SLPP +VAEA+ +RERA   H +  Q
Sbjct: 1581 IDPEVFASLPPEMQQEIVSSHQETHSSEITDLGLDPDALAALPEDMRREAIAEARQDQQRGKSRWPSMLALVMHKNSNISTLPAAEREQQAAAEPPADPSNAEEMDQASFLATLNPELRNEILLTADESFLQSLPPQIVAEANALRERAASEHNQRSQ 1738          
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1173950287|gb|OQR98260.1| (HECT E3 ubiquitin ligase [Achlya hypogyna])

HSP 1 Score: 102.449 bits (254), Expect = 8.279e-19
Identity = 65/139 (46.76%), Postives = 81/139 (58.27%), Query Frame = 0
Query:    1 MDPEAFACLPAEIQRELAQEHGTLPT----------PLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGR 129
            MDP+ F  LPA++Q E+       PT           +  SS D E L ALP  +R+E+LA E   RR REA A   PA+ + A EMDNASF+ASL PDLREE+L+   D  L +LP +V AEA V+RER   H  RG 
Sbjct: 2350 MDPDVFNSLPADMQAEIIASQAPAPTVTEGRSQLEIDIANSSYDRETLEALPADIRDEILANE---RREREAAA---PADISRAQEMDNASFVASLAPDLREEILITSDDAFLQTLPSDVRAEAMVLRER---HAFRGN 2479          
The following BLAST results are available for this feature:
BLAST of EWM27817.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110126|gb|EWM27817.1|0.000e+0100.00hypothetical protein Naga_101547g1, partial [Nanno... [more]
gi|1210512703|dbj|GAX28293.1|2.505e-2231.23E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|1210527798|dbj|GAX13555.1|2.418e-2127.00E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|219119760|ref|XP_002180633.1|5.021e-2145.38predicted protein, partial [Phaeodactylum tricornu... [more]
gi|325179897|emb|CCA14299.1|1.779e-2043.92HECT E3 ubiquitin ligase putative [Albugo laibachi... [more]
gi|1160556501|ref|XP_020436147.1|2.105e-2043.88putative E3 ubiquitin-protein ligase [Polysphondyl... [more]
gi|298713438|emb|CBJ33640.1|6.789e-2059.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|635371234|emb|CCI40634.1|6.032e-1945.59unnamed protein product [Albugo candida][more]
gi|397644877|gb|EJK76585.1|6.493e-1939.24hypothetical protein THAOC_01642 [Thalassiosira oc... [more]
gi|1173950287|gb|OQR98260.1|8.279e-1946.76HECT E3 ubiquitin ligase [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2864rna2864Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications