EWM27817.1, cds2856 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|585110126|gb|EWM27817.1| (hypothetical protein Naga_101547g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 1176 bits (3041), Expect = 0.000e+0 Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP 603
MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP
Sbjct: 1 MDPEAFACLPAEIQRELAQEHGTLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVARLVGEEGGEEGGEEGEEEFPPGHMLGTGPSKMPSVGMGEEEGEGEGAMPAEVARRIGDLLLFLCQTSPRVRVDMILQESWTEGGKEGGSEGGSKMEVDTPSPPSSALVEHVLDLLVCPHYTASTVRLDGVLTLLETVLGTTMAAYLPPDEKARRQERDARKQEKERRAQKQRNGEAPDEEEGRNASGGQAQVGRAGDSPPPHADSGSPPSLVQSLRPPLPPRRRPRLHWLHPLPPLPPWGFPHPHFPPRRRLKTPCSPRWRSRRWRSRPRASRPCVGCFWRKRARIPPLPGSIKSSRPSRGSPRTNTGLSRSALPP 603
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 113.62 bits (283), Expect = 2.505e-22 Identity = 89/285 (31.23%), Postives = 122/285 (42.81%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGT---LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRR-REATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGG-----GGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFPA--------RTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALL 268
DPE F LP E+Q + ++ L L S+LDP L+ LPE +R +++ ++ ER R R+ A+P++A EMD ASF+ASL P LREEVLL VL+SLPP+VVAEA V+RERA G+ GR V DG G GG G G G P K G +VE D + P+ V+ ++L FL +RP+ + + + N C S+P R
Sbjct: 3008 FDPEVFNSLPVEMQHDCVSQYNATQELEMQLRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQIEGDGVADPSHAEEMDTASFIASLAPGLREEVLLTADSSVLSSLPPDVVAEAQVLRERA-----------------------------SGLRDGRLFAENV--------DGAQQGNAVGGDGTDSSRLAVTGRGTVSELPSQKKRQR------TGKFKVEKDLDDTVYLPSSLFSPVCKSDVKLFIKLFFLVSPIRPQRLMQKVIQNFC-SIPSLREFF 3248
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 110.538 bits (275), Expect = 2.418e-21 Identity = 108/400 (27.00%), Postives = 156/400 (39.00%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGT---LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRR-REATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAGAAANSLTLAGGGGGGMGGGRGGGLPVYFTGPGRFDGRGGGGGGGGGGGGGGGGGGGGGFPWHPKPTTPLPSVPPGSIRVEADRIEPFPFP--------ARTVRTLLRLLFLSRSLRPRLALARCLLNLCGSLPHRRALLPCLVFLWAGRRQEARAAVAR-----LVGEEGGEEGGEEGEE--EFPPGHMLGTGPSKMPS---------------VGMGEEEGE----------GEGAMPAEVARRIGDLLLFLCQTSPR 356
DPE F LP E+Q + ++ L L S+LDP L+ LPE +R +++ ++ ER R R+ A+P++A EMD ASF+ASL P LREEVLL + VL+SLPP+VVAEA V+RERA G+ GR V T G G G G G P K G +VE D + P V+ ++L FL +RP+ + + L N C R L + L AA+ + L ++ +E + FPP +LG P + + G G + +P V R+ +++ LC+ SPR
Sbjct: 3008 FDPEVFNSLPVEMQHDCVSQYNATQELEMELRESTLDPSVLAELPEDIRRDIIEQDRIERERARQQNEGDGAADPSHAEEMDTASFIASLAPGLREEVLLTADNSVLSSLPPDVVAEAQVLRERA-----------------------------SGLRDGRLFAESVDETQQG---NAVGVDGTVSSRLAVTGRGTVTEMPGQKKRQR------TGKFKVEKDLDDTVYLPNSLFSPVCKSDVQLFIKLFFLVSPIRPQRLMQKVLQNFCSIPTLREFFLNAFLALLNENSVRISAALEKFGLTYLPSDQWRRAMDDEFRDLSIFPPETLLGATPDALEAESFNASMTASLLRHRYGFGNTTSVAANLPSVLQFNDTTLPPIVVTRLLEMVTQLCKNSPR 3369
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|219119760|ref|XP_002180633.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408106|gb|EEC48041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 109.768 bits (273), Expect = 5.021e-21 Identity = 59/130 (45.38%), Postives = 85/130 (65.38%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHG---TLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQR 127
+D E F LP ++Q++ + L L GS+LDPE L+ALPE +R EV+ +E R +++ PA+PA A +MD ASFLAS+ PDLREE+L+ ++ LASLPP++ AEA ++RERA H+R
Sbjct: 3168 VDMEVFNSLPVDMQQDCIDHYNGAQELVAQLDGSTLDPEVLAALPEDMRREVIEQERLARGQQDP-----PADPARAEDMDTASFLASVGPDLREEILVSADNDFLASLPPSIAAEAQILRERASAQHRR 3292
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|325179897|emb|CCA14299.1| (HECT E3 ubiquitin ligase putative [Albugo laibachii Nc14]) HSP 1 Score: 107.842 bits (268), Expect = 1.779e-20 Identity = 65/148 (43.92%), Postives = 84/148 (56.76%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGT-----------LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQAQQAAAG 137
MDPE FA LPAE+Q E+ + G L + S+ D E L ALP +R EVLA E RER + PA+ ++A +MDNASF+ASL PDLREE+L D L +LP ++ AEA ++RERAV + Q Q A G
Sbjct: 2394 MDPEVFASLPAEMQMEIMAQFGVPAASVPSHETQLSLDIENSNFDRETLEALPADIREEVLANERRERE------SETPADVSHAQDMDNASFVASLAPDLREEILSTCDDAFLETLPSDIRAEALILRERAVF--RSAYQTQDARRG 2533
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1160556501|ref|XP_020436147.1| (putative E3 ubiquitin-protein ligase [Polysphondylium pallidum PN500] >gi|281209862|gb|EFA84030.1| putative E3 ubiquitin-protein ligase [Polysphondylium pallidum PN500]) HSP 1 Score: 107.457 bits (267), Expect = 2.105e-20 Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRE-LAQEHGTLPTPLPGS--SLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRG---RQAQQ 133
+DP + LPAE++ E LA + G++ + +++PE L+ALP+ ++NEVL +E +RR ATA P + +A +MDNASFLA+LPPDLREEVL+ + L++LPP + AEA +RER R R AQQ
Sbjct: 2223 IDPTFLSALPAELRAEVLATQLGSIHQNATSNNITINPEFLAALPQDIQNEVLEQERLISQRRRATAPPPPVDITHAQDMDNASFLATLPPDLREEVLISQPEAFLSTLPPELHAEAVRLRERDRYDTYRSFIERNAQQ 2361
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|298713438|emb|CBJ33640.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.916 bits (263), Expect = 6.789e-20 Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0
Query: 28 LPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRA-PANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRER 120
L + LDPEAL+ALP +R EVL +EAR RR REA P +P+ A+EMDNASF+A+LPP+LR EVLL D +L++LPPN+VAEA V+RER
Sbjct: 608 LEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNAGGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLVAEAMVMRER 701
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|635371234|emb|CCI40634.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 102.834 bits (255), Expect = 6.032e-19 Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGT-------------LPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVL 123
MDPE F LP E+Q E+ + G L + S+ D E L ALP +R EVLA ERR REA A PA+ ++A +MDNASF+ASL PDLREE+L D L +LP ++ AEA ++RERAV
Sbjct: 2428 MDPEVFESLPPEMQMEIMAQFGVPVENETPPSRETQLNLDMENSNFDRETLEALPADIREEVLA---NERREREAVA---PADVSHAQDMDNASFVASLAPDLREEILSTCDDAFLETLPSDIRAEALILRERAVF 2557
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|397644877|gb|EJK76585.1| (hypothetical protein THAOC_01642 [Thalassiosira oceanica]) HSP 1 Score: 102.834 bits (255), Expect = 6.493e-19 Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHG-TLPTPLPGSSLDPEALSALPEALRNEVLAEEARERRRREA---------------------------TATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGRQ 130
+DPE FA LP E+Q+E+ H T + + LDP+AL+ALPE +R E +AE ++++R ++ A PA+P+NA EMD ASFLA+L P+LR E+LL + L SLPP +VAEA+ +RERA H + Q
Sbjct: 1581 IDPEVFASLPPEMQQEIVSSHQETHSSEITDLGLDPDALAALPEDMRREAIAEARQDQQRGKSRWPSMLALVMHKNSNISTLPAAEREQQAAAEPPADPSNAEEMDQASFLATLNPELRNEILLTADESFLQSLPPQIVAEANALRERAASEHNQRSQ 1738
BLAST of EWM27817.1 vs. NCBI_GenBank
Match: gi|1173950287|gb|OQR98260.1| (HECT E3 ubiquitin ligase [Achlya hypogyna]) HSP 1 Score: 102.449 bits (254), Expect = 8.279e-19 Identity = 65/139 (46.76%), Postives = 81/139 (58.27%), Query Frame = 0
Query: 1 MDPEAFACLPAEIQRELAQEHGTLPT----------PLPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVVAEAHVVRERAVLHHQRGR 129
MDP+ F LPA++Q E+ PT + SS D E L ALP +R+E+LA E RR REA A PA+ + A EMDNASF+ASL PDLREE+L+ D L +LP +V AEA V+RER H RG
Sbjct: 2350 MDPDVFNSLPADMQAEIIASQAPAPTVTEGRSQLEIDIANSSYDRETLEALPADIRDEILANE---RREREAAA---PADISRAQEMDNASFVASLAPDLREEILITSDDAFLQTLPSDVRAEAMVLRER---HAFRGN 2479 The following BLAST results are available for this feature:
BLAST of EWM27817.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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