EWM27821.1, cds2852 (CDS) Nannochloropsis gaditana

Overview
NameEWM27821.1
Unique Namecds2852
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:95706..95726 +
Alignment locationCM002460.1:95923..96021 +
Alignment locationCM002460.1:96285..96467 +
Alignment locationCM002460.1:96676..96732 +
Alignment locationCM002460.1:96854..97055 +
Alignment locationCM002460.1:97207..97424 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27821.1
Producthect-domain containing protein
Orig transcript idgnl|cribi|Naga_101501g1.1539.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:95706..95726 +
CM002460.1supercontigCM002460.1:95923..96021 +
CM002460.1supercontigCM002460.1:96285..96467 +
CM002460.1supercontigCM002460.1:96676..96732 +
CM002460.1supercontigCM002460.1:96854..97055 +
CM002460.1supercontigCM002460.1:97207..97424 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR010314E3_Ub_ligase_DUF913
IPR011989ARM-like
Homology
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|585110138|gb|EWM27821.1| (hect-domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 509.99 bits (1312), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR 259
            MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR
Sbjct:    1 MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR 259          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 114.775 bits (286), Expect = 3.473e-25
Identity = 82/257 (31.91%), Postives = 129/257 (50.19%), Query Frame = 0
Query:   14 ASVKTLLYCLLTLLSIVFQ-SAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRR--YFQYVGNAAYALAR 259
            +S + LL+ LLT L++VFQ  + SA + G T  G   +R P L   L+ IL ++      + +  S ++ +I+ SDP  +++VH SGLA A ++++          +P   E+I   P +L A S++  G  A+   NPFP+L   L HPAY +P SR +L   T   IG  L+++++H              RLR  +L A   ++NR+VL    +A   E    E+G    E  +E  R    QYV N +  L +
Sbjct:  603 SSQQVLLFTLLTCLNVVFQPESTSAAMSGTTLPGGAEIRKPVLKKALIAILDNVEVFGGNLVALVSAMLTEILNSDPHCVNHVHKSGLADAFINMIMRTTESGDPSIPAVSELIMAIPNVLAAFSLTEDGAKAVKSKNPFPALLRVLYHPAYAMPRSRCLLNEMTA-VIGTGLDEVMRH------------VDRLRPQILQAISEAMNRVVL----FA--DELTVLEDGYRHEEKDVEEMRTCLIQYVMNFSQLLEQ 840          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris])

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 80/256 (31.25%), Postives = 128/256 (50.00%), Query Frame = 0
Query:   15 SVKTLLYCLLTLLSIVFQ-SAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRR--YFQYVGNAAYALAR 259
            S + LL+ LLT L++VFQ  + SA + G T  G   +R P L   L+ IL ++      + +  S ++ +++ SDP  +++VH SGLA A +S++          +P   E+I   P +L ALS++  G  A+   NPFP+L     HPAY +P SR +L   T   IG  L+++++H              RLR  +L A   ++N +V+    YA   E +  E+     E ++E  R    QYV N +  L +
Sbjct:  604 SQQVLLFTLLTCLNVVFQPESTSAAMSGTTLPGGAEIRKPALKKALIAILDNVDVFGGNLVALVSAMLTEVLNSDPHCVNHVHKSGLADAYISMIVRTTESGDPSIPAVSELIMAIPNVLAALSLTEDGAKAVKSKNPFPALLRVFYHPAYAMPRSRCLLNEMTA-VIGTGLDEVMRH------------VDRLRPQILQAITEAMNEVVM----YA--DELRVLEDAFRHEEKNVEEMRTCLIQYVMNFSQLLEQ 840          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|219119760|ref|XP_002180633.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408106|gb|EEC48041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 102.449 bits (254), Expect = 4.956e-21
Identity = 63/218 (28.90%), Postives = 110/218 (50.46%), Query Frame = 0
Query:   14 ASVKTLLYCLLTLLSIVFQSAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVL 216
            +S + LL+ ++T L++VF    +A        G   +R   LT  L+ ++  +S+    V S  + L++D++ SDP ++SY+H SG+A++ LS++                 LPP  E++   P +L ALS++  G   +   NPFPSL     HP Y +P SR +L   T   IG  L++L++H             +RL+  V+ A  +++  +V+
Sbjct:  684 SSQRGLLFSIITYLTVVFHQESTASTSATNPSGGAQIRQEGLTRALIHVMEHVSSYGGHVASLTATLLSDVMNSDPHVVSYIHESGIAKSFLSMVVGRRVKAGDSTDTYEPVLPPVPELVMAVPNVLSALSLTEDGAKVIYEINPFPSLMRIFYHPNYAMPKSRCLLNEITG-IIGTGLDELMRH------------VERLKPLVMEAVANAMKDVVM 888          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1173950287|gb|OQR98260.1| (HECT E3 ubiquitin ligase [Achlya hypogyna])

HSP 1 Score: 84.3445 bits (207), Expect = 7.719e-15
Identity = 57/175 (32.57%), Postives = 93/175 (53.14%), Query Frame = 0
Query:   17 KTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
            + L   LL +LS+ F S G     GAT  +    +P L+  L  IL+++      +F++A+ L++DII +DP+ +++VH SGLA A L  L        +  LPPS E++   P++L AL ++S  +  ++ + P   L    V PAYVL H    L       +G  L++L++H
Sbjct:  552 QILAITLLNMLSVSFHSQGVMS-AGATSRAIRDGAP-LSKVLHAILTNIDVYGPMLFAQAATLVSDIINNDPTSVNHVHASGLADAFLKTLCRWDLITSANALPPSPELVIAVPSVLSALCLTSTHVEKVVGYEPLAYLLDMFVMPAYVLYHGYDSLQGDVASIVGGGLDELMRH 724          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|813129103|ref|XP_012197577.1| (hypothetical protein SPRG_03609 [Saprolegnia parasitica CBS 223.65] >gi|641537847|gb|KDO31691.1| hypothetical protein SPRG_03609 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 83.5741 bits (205), Expect = 1.536e-14
Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 0
Query:   28 SIVFQSAGSAHIQGATEGSTYLRSPT-LTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
            S+ F S G   +  A   S  +R    L   LL ILS++ A  + +F++A+ L++DII +DP+ ++++H SGLA+A L  L        S  LPPS E++   P++L AL ++S  +  ++ + P   L    V P YVL H    L       +G  L++L++H
Sbjct:  538 SVSFHSQG---VMSAGATSRVIRDTAPLAKVLLAILSNVDAYGSMLFAQAATLVSDIINNDPTSVNHIHASGLAEAFLKTLCRWDLTNGSNALPPSPELVIAVPSVLSALCLTSTHVEKVVAYEPLTYLLDMFVMPGYVLYHGFDSLQGDVASIVGGGLDELMRH 699          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|298713023|emb|CBJ33447.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.2629 bits (199), Expect = 6.261e-14
Identity = 75/250 (30.00%), Postives = 113/250 (45.20%), Query Frame = 0
Query:    9 LAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSI-ISYVHGSGLAQAILSILSAPL--PPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPAT-PEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASL--ERRRYFQYVGN 252
            LA  S S K LL+ +L  LSI FQ+    H Q    GS  L    LT+ ++D+  +       + +  + LI+D+   DPS  ++Y+  SG+    L +L+A    PPS +++   P +L AL ++  G S +   N FP+ F  L  P  + P SR   P       +G  L++L++H           P   LR   + A V SL  LV       G G+   + E  G+  A +  ER    QY  N
Sbjct:  202 LADPSPSQKALLFSVLNALSITFQNQTQTHQQ---VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSR--YPEGNMTSVVGAGLDELMRH----------VPA--LRPQCIKALVSSLKELV-------GKGDELLKRELAGDSSAEVLNERTLMQQYAAN 427          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|669157538|ref|XP_008614331.1| (hypothetical protein SDRG_10135 [Saprolegnia diclina VS20] >gi|530734148|gb|EQC32390.1| hypothetical protein SDRG_10135 [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 4.056e-13
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 0
Query:   28 SIVFQSAGSAHIQGATEGSTYLRSPT-LTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILS--------APLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
            S+ F S G   +  A   S  +R    L   LL ILS++ A  + +F++A+ L++DII +DP+ ++++HGSGLA A L  L           L PS E++   P++L AL ++S  +  ++ + P   L    V P+YVL H    L       +G  L++L++H
Sbjct:  561 SVSFHSQG---VMSAGATSRVIRDTAPLAKVLLAILSNVDAYGSMLFAQAATLLSDIINNDPTSVNHIHGSGLADAFLKTLCRWDLNTGVNALSPSPELVIAVPSVLSALCLTSTHVEKVVAYEPVTYLLDMFVMPSYVLYHGFDSLQGDVASIVGGGLDELMRH 722          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|673050529|ref|XP_008879225.1| (hypothetical protein H310_13485 [Aphanomyces invadans] >gi|574465221|gb|ETV92261.1| hypothetical protein H310_13485 [Aphanomyces invadans])

HSP 1 Score: 75.0998 bits (183), Expect = 1.313e-11
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 0
Query:   17 KTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLD-ILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-----------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYV 157
            + L+  LL +LS+ F + G   I  A     ++R   + +++LD +L  +      V+S+A+ L+ADII +DP+ + +VH +GLA AIL  +           +  LPP  E+I   P +L +L ISS  +  +  + P   L      P+YV
Sbjct:  576 RVLVVSLLNMLSVSFHTQG---IMSAGTAPRFIREDAVLNSVLDRVLRHVDVYGTVVYSQAATLVADIINNDPTCVHHVHSTGLADAILDTICRWDLHGLAAATNYLPPGPELIMAIPTVLSSLCISSTYVDKVAGYEPMAYLLDMFTLPSYV 725          
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|698805184|ref|XP_009835621.1| (hypothetical protein H257_10690 [Aphanomyces astaci] >gi|574109613|gb|ETV75116.1| hypothetical protein H257_10690 [Aphanomyces astaci])

HSP 1 Score: 70.8626 bits (172), Expect = 3.058e-10
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 0
Query:    5 TRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSP-TLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAIL-----------SILSAP-LPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYV 157
            ++ ++   S S + L+  LL +LS+ F + G   +  A     ++R   TL   L  IL  L      VFS+A+ L+ADII +DP+ +++VH +GLA A L           +  S+P LPP  E++   P ++ AL ++S  +  +    P   L      P YV
Sbjct:  575 SQEIVPSPSDSARVLVVALLNMLSVSFHTQG---VMSAGTTPRFIREDATLNKLLHRILRHLDVYGTIVFSQAATLVADIINNDPTCVNHVHATGLADAFLESTCRWDLHAVTRASSPILPPCPELMMALPNVVSALCMTSTYIDKVAAFEPLAYLLDMFTLPTYV 737          
The following BLAST results are available for this feature:
BLAST of EWM27821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110138|gb|EWM27821.1|0.000e+0100.00hect-domain containing protein [Nannochloropsis ga... [more]
gi|1210512703|dbj|GAX28293.1|3.473e-2531.91E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|1210527798|dbj|GAX13555.1|1.511e-2431.25E3 ubiquitin-protein ligase HUWE1 [Fistulifera sol... [more]
gi|219119760|ref|XP_002180633.1|4.956e-2128.90predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1173950287|gb|OQR98260.1|7.719e-1532.57HECT E3 ubiquitin ligase [Achlya hypogyna][more]
gi|813129103|ref|XP_012197577.1|1.536e-1432.73hypothetical protein SPRG_03609 [Saprolegnia paras... [more]
gi|298713023|emb|CBJ33447.1|6.261e-1430.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|669157538|ref|XP_008614331.1|4.056e-1332.12hypothetical protein SDRG_10135 [Saprolegnia dicli... [more]
gi|673050529|ref|XP_008879225.1|1.313e-1130.72hypothetical protein H310_13485 [Aphanomyces invad... [more]
gi|698805184|ref|XP_009835621.1|3.058e-1030.12hypothetical protein H257_10690 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2860rna2860Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications