EWM27821.1, cds2852 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|585110138|gb|EWM27821.1| (hect-domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 509.99 bits (1312), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query: 1 MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR 259
MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR
Sbjct: 1 MVLPTRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILSAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRRYFQYVGNAAYALAR 259
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1210512703|dbj|GAX28293.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 114.775 bits (286), Expect = 3.473e-25 Identity = 82/257 (31.91%), Postives = 129/257 (50.19%), Query Frame = 0
Query: 14 ASVKTLLYCLLTLLSIVFQ-SAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRR--YFQYVGNAAYALAR 259
+S + LL+ LLT L++VFQ + SA + G T G +R P L L+ IL ++ + + S ++ +I+ SDP +++VH SGLA A ++++ +P E+I P +L A S++ G A+ NPFP+L L HPAY +P SR +L T IG L+++++H RLR +L A ++NR+VL +A E E+G E +E R QYV N + L +
Sbjct: 603 SSQQVLLFTLLTCLNVVFQPESTSAAMSGTTLPGGAEIRKPVLKKALIAILDNVEVFGGNLVALVSAMLTEILNSDPHCVNHVHKSGLADAFINMIMRTTESGDPSIPAVSELIMAIPNVLAAFSLTEDGAKAVKSKNPFPALLRVLYHPAYAMPRSRCLLNEMTA-VIGTGLDEVMRH------------VDRLRPQILQAISEAMNRVVL----FA--DELTVLEDGYRHEEKDVEEMRTCLIQYVMNFSQLLEQ 840
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1210527798|dbj|GAX13555.1| (E3 ubiquitin-protein ligase HUWE1 [Fistulifera solaris]) HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24 Identity = 80/256 (31.25%), Postives = 128/256 (50.00%), Query Frame = 0
Query: 15 SVKTLLYCLLTLLSIVFQ-SAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASLERRR--YFQYVGNAAYALAR 259
S + LL+ LLT L++VFQ + SA + G T G +R P L L+ IL ++ + + S ++ +++ SDP +++VH SGLA A +S++ +P E+I P +L ALS++ G A+ NPFP+L HPAY +P SR +L T IG L+++++H RLR +L A ++N +V+ YA E + E+ E ++E R QYV N + L +
Sbjct: 604 SQQVLLFTLLTCLNVVFQPESTSAAMSGTTLPGGAEIRKPALKKALIAILDNVDVFGGNLVALVSAMLTEVLNSDPHCVNHVHKSGLADAYISMIVRTTESGDPSIPAVSELIMAIPNVLAALSLTEDGAKAVKSKNPFPALLRVFYHPAYAMPRSRCLLNEMTA-VIGTGLDEVMRH------------VDRLRPQILQAITEAMNEVVM----YA--DELRVLEDAFRHEEKNVEEMRTCLIQYVMNFSQLLEQ 840
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|219119760|ref|XP_002180633.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408106|gb|EEC48041.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 102.449 bits (254), Expect = 4.956e-21 Identity = 63/218 (28.90%), Postives = 110/218 (50.46%), Query Frame = 0
Query: 14 ASVKTLLYCLLTLLSIVFQSAGSAHIQGAT-EGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVL 216
+S + LL+ ++T L++VF +A G +R LT L+ ++ +S+ V S + L++D++ SDP ++SY+H SG+A++ LS++ LPP E++ P +L ALS++ G + NPFPSL HP Y +P SR +L T IG L++L++H +RL+ V+ A +++ +V+
Sbjct: 684 SSQRGLLFSIITYLTVVFHQESTASTSATNPSGGAQIRQEGLTRALIHVMEHVSSYGGHVASLTATLLSDVMNSDPHVVSYIHESGIAKSFLSMVVGRRVKAGDSTDTYEPVLPPVPELVMAVPNVLSALSLTEDGAKVIYEINPFPSLMRIFYHPNYAMPKSRCLLNEITG-IIGTGLDELMRH------------VERLKPLVMEAVANAMKDVVM 888
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|1173950287|gb|OQR98260.1| (HECT E3 ubiquitin ligase [Achlya hypogyna]) HSP 1 Score: 84.3445 bits (207), Expect = 7.719e-15 Identity = 57/175 (32.57%), Postives = 93/175 (53.14%), Query Frame = 0
Query: 17 KTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
+ L LL +LS+ F S G GAT + +P L+ L IL+++ +F++A+ L++DII +DP+ +++VH SGLA A L L + LPPS E++ P++L AL ++S + ++ + P L V PAYVL H L +G L++L++H
Sbjct: 552 QILAITLLNMLSVSFHSQGVMS-AGATSRAIRDGAP-LSKVLHAILTNIDVYGPMLFAQAATLVSDIINNDPTSVNHVHASGLADAFLKTLCRWDLITSANALPPSPELVIAVPSVLSALCLTSTHVEKVVGYEPLAYLLDMFVMPAYVLYHGYDSLQGDVASIVGGGLDELMRH 724
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|813129103|ref|XP_012197577.1| (hypothetical protein SPRG_03609 [Saprolegnia parasitica CBS 223.65] >gi|641537847|gb|KDO31691.1| hypothetical protein SPRG_03609 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 83.5741 bits (205), Expect = 1.536e-14 Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 0
Query: 28 SIVFQSAGSAHIQGATEGSTYLRSPT-LTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL--------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
S+ F S G + A S +R L LL ILS++ A + +F++A+ L++DII +DP+ ++++H SGLA+A L L S LPPS E++ P++L AL ++S + ++ + P L V P YVL H L +G L++L++H
Sbjct: 538 SVSFHSQG---VMSAGATSRVIRDTAPLAKVLLAILSNVDAYGSMLFAQAATLVSDIINNDPTSVNHIHASGLAEAFLKTLCRWDLTNGSNALPPSPELVIAVPSVLSALCLTSTHVEKVVAYEPLTYLLDMFVMPGYVLYHGFDSLQGDVASIVGGGLDELMRH 699
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|298713023|emb|CBJ33447.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.2629 bits (199), Expect = 6.261e-14 Identity = 75/250 (30.00%), Postives = 113/250 (45.20%), Query Frame = 0
Query: 9 LAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSI-ISYVHGSGLAQAILSILSAPL--PPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPAT-PEAIGQRLEDLLQHHGSGGGGPSTTPGQRLRDAVLNAAVHSLNRLVLSDLFYAGVGEGKGREEGGGEVEASL--ERRRYFQYVGN 252
LA S S K LL+ +L LSI FQ+ H Q GS L LT+ ++D+ + + + + LI+D+ DPS ++Y+ SG+ L +L+A PPS +++ P +L AL ++ G S + N FP+ F L P + P SR P +G L++L++H P LR + A V SL LV G G+ + E G+ A + ER QY N
Sbjct: 202 LADPSPSQKALLFSVLNALSITFQNQTQTHQQ---VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSR--YPEGNMTSVVGAGLDELMRH----------VPA--LRPQCIKALVSSLKELV-------GKGDELLKRELAGDSSAEVLNERTLMQQYAAN 427
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|669157538|ref|XP_008614331.1| (hypothetical protein SDRG_10135 [Saprolegnia diclina VS20] >gi|530734148|gb|EQC32390.1| hypothetical protein SDRG_10135 [Saprolegnia diclina VS20]) HSP 1 Score: 79.337 bits (194), Expect = 4.056e-13 Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 0
Query: 28 SIVFQSAGSAHIQGATEGSTYLRSPT-LTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSILS--------APLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYVLPHSRAVLPPATPEAIGQRLEDLLQH 183
S+ F S G + A S +R L LL ILS++ A + +F++A+ L++DII +DP+ ++++HGSGLA A L L L PS E++ P++L AL ++S + ++ + P L V P+YVL H L +G L++L++H
Sbjct: 561 SVSFHSQG---VMSAGATSRVIRDTAPLAKVLLAILSNVDAYGSMLFAQAATLLSDIINNDPTSVNHIHGSGLADAFLKTLCRWDLNTGVNALSPSPELVIAVPSVLSALCLTSTHVEKVVAYEPVTYLLDMFVMPSYVLYHGFDSLQGDVASIVGGGLDELMRH 722
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|673050529|ref|XP_008879225.1| (hypothetical protein H310_13485 [Aphanomyces invadans] >gi|574465221|gb|ETV92261.1| hypothetical protein H310_13485 [Aphanomyces invadans]) HSP 1 Score: 75.0998 bits (183), Expect = 1.313e-11 Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 0
Query: 17 KTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSPTLTSTLLD-ILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAILSIL-----------SAPLPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYV 157
+ L+ LL +LS+ F + G I A ++R + +++LD +L + V+S+A+ L+ADII +DP+ + +VH +GLA AIL + + LPP E+I P +L +L ISS + + + P L P+YV
Sbjct: 576 RVLVVSLLNMLSVSFHTQG---IMSAGTAPRFIREDAVLNSVLDRVLRHVDVYGTVVYSQAATLVADIINNDPTCVHHVHSTGLADAILDTICRWDLHGLAAATNYLPPGPELIMAIPTVLSSLCISSTYVDKVAGYEPMAYLLDMFTLPSYV 725
BLAST of EWM27821.1 vs. NCBI_GenBank
Match: gi|698805184|ref|XP_009835621.1| (hypothetical protein H257_10690 [Aphanomyces astaci] >gi|574109613|gb|ETV75116.1| hypothetical protein H257_10690 [Aphanomyces astaci]) HSP 1 Score: 70.8626 bits (172), Expect = 3.058e-10 Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 0
Query: 5 TRHVLAPASASVKTLLYCLLTLLSIVFQSAGSAHIQGATEGSTYLRSP-TLTSTLLDILSSLSALNAAVFSRASGLIADIIGSDPSIISYVHGSGLAQAIL-----------SILSAP-LPPSCEVICEAPAILCALSISSQGLSALLRHNPFPSLFACLVHPAYV 157
++ ++ S S + L+ LL +LS+ F + G + A ++R TL L IL L VFS+A+ L+ADII +DP+ +++VH +GLA A L + S+P LPP E++ P ++ AL ++S + + P L P YV
Sbjct: 575 SQEIVPSPSDSARVLVVALLNMLSVSFHTQG---VMSAGTTPRFIREDATLNKLLHRILRHLDVYGTIVFSQAATLVADIINNDPTCVNHVHATGLADAFLESTCRWDLHAVTRASSPILPPCPELMMALPNVVSALCMTSTYIDKVAAFEPLAYLLDMFTLPTYV 737 The following BLAST results are available for this feature:
BLAST of EWM27821.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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