EWM27848.1, cds2828 (CDS) Nannochloropsis gaditana

Overview
NameEWM27848.1
Unique Namecds2828
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:9588..10771 +
Alignment locationCM002460.1:11044..12256 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27848.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100318g2.3140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:9588..10771 +
CM002460.1supercontigCM002460.1:11044..12256 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27848.1 vs. NCBI_GenBank
Match: gi|585110174|gb|EWM27848.1| (hypothetical protein Naga_100318g2 [Nannochloropsis gaditana])

HSP 1 Score: 1598.18 bits (4137), Expect = 0.000e+0
Identity = 798/798 (100.00%), Postives = 798/798 (100.00%), Query Frame = 0 
Query:    1 MDDNDREPLAKTSRGSLPSPSSSVDALSPAHSDDGGQDEYLVEGHRLTQVNDENDDASTRVTDDWALEAAAQELEARLANLRRYSNWRLNTRQYPSSPALETQHALWALRQTASGGLSLVLPPAIAEEEESEHEGPSMVRGQSLSAAIDEINGFMSRRATSAWRRSRTLASGGNLPYPTSSSRLSGPLLPLSQRQPGGAEGRVTLAPGIGSSTGSGRSPEARGGRDGKGTKVVEGERVTASATQEEEQRLPRDSPSLLRASLLSKAPPLWSAWERLGWTIGDYFMSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITCIGLAGLVALRQMNGAVWGPLFSVSLDFQDELVLDTSLRFHTSQWRTGGQGEGPGGRLGGRGALLWHLLDILATQWLPDVFAILAWYGLYTWLPLRWPGTSRREELLYVAAAMGVAVGCYAAQFVLASWVDAYYPRASSSGSSSNGAGGEAVLEREGELGGSLGNGRRSIASRGNHNRSTQGDLSIPLQVPVPKCCEPPPFLSGKYLAELLLYLWAFLAANMLWVFWWDFLDDHLLSDRPLLSNLLCAVGGLALEFMLNVASTEVAGGVYLDGAAEGSSGLFFPVCYFGEVAAYRASLRSAQAFAVYRKSTMGGLAGSASCSLLDTGVRSALESPVREIALLRPGSLGQGGEARGWKAGVAADKIGKVAETPTLVHGESGMGLLANESGRSDD 798
            MDDNDREPLAKTSRGSLPSPSSSVDALSPAHSDDGGQDEYLVEGHRLTQVNDENDDASTRVTDDWALEAAAQELEARLANLRRYSNWRLNTRQYPSSPALETQHALWALRQTASGGLSLVLPPAIAEEEESEHEGPSMVRGQSLSAAIDEINGFMSRRATSAWRRSRTLASGGNLPYPTSSSRLSGPLLPLSQRQPGGAEGRVTLAPGIGSSTGSGRSPEARGGRDGKGTKVVEGERVTASATQEEEQRLPRDSPSLLRASLLSKAPPLWSAWERLGWTIGDYFMSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITCIGLAGLVALRQMNGAVWGPLFSVSLDFQDELVLDTSLRFHTSQWRTGGQGEGPGGRLGGRGALLWHLLDILATQWLPDVFAILAWYGLYTWLPLRWPGTSRREELLYVAAAMGVAVGCYAAQFVLASWVDAYYPRASSSGSSSNGAGGEAVLEREGELGGSLGNGRRSIASRGNHNRSTQGDLSIPLQVPVPKCCEPPPFLSGKYLAELLLYLWAFLAANMLWVFWWDFLDDHLLSDRPLLSNLLCAVGGLALEFMLNVASTEVAGGVYLDGAAEGSSGLFFPVCYFGEVAAYRASLRSAQAFAVYRKSTMGGLAGSASCSLLDTGVRSALESPVREIALLRPGSLGQGGEARGWKAGVAADKIGKVAETPTLVHGESGMGLLANESGRSDD
Sbjct:    1 MDDNDREPLAKTSRGSLPSPSSSVDALSPAHSDDGGQDEYLVEGHRLTQVNDENDDASTRVTDDWALEAAAQELEARLANLRRYSNWRLNTRQYPSSPALETQHALWALRQTASGGLSLVLPPAIAEEEESEHEGPSMVRGQSLSAAIDEINGFMSRRATSAWRRSRTLASGGNLPYPTSSSRLSGPLLPLSQRQPGGAEGRVTLAPGIGSSTGSGRSPEARGGRDGKGTKVVEGERVTASATQEEEQRLPRDSPSLLRASLLSKAPPLWSAWERLGWTIGDYFMSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITCIGLAGLVALRQMNGAVWGPLFSVSLDFQDELVLDTSLRFHTSQWRTGGQGEGPGGRLGGRGALLWHLLDILATQWLPDVFAILAWYGLYTWLPLRWPGTSRREELLYVAAAMGVAVGCYAAQFVLASWVDAYYPRASSSGSSSNGAGGEAVLEREGELGGSLGNGRRSIASRGNHNRSTQGDLSIPLQVPVPKCCEPPPFLSGKYLAELLLYLWAFLAANMLWVFWWDFLDDHLLSDRPLLSNLLCAVGGLALEFMLNVASTEVAGGVYLDGAAEGSSGLFFPVCYFGEVAAYRASLRSAQAFAVYRKSTMGGLAGSASCSLLDTGVRSALESPVREIALLRPGSLGQGGEARGWKAGVAADKIGKVAETPTLVHGESGMGLLANESGRSDD 798
[Close]
BLAST of EWM27848.1 vs. NCBI_GenBank
Match: gi|553184179|ref|XP_005854043.1| (hypothetical protein NGA_0435700, partial [Nannochloropsis gaditana CCMP526] >gi|422295015|gb|EKU22314.1| hypothetical protein NGA_0435700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 254.218 bits (648), Expect = 3.171e-77
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 
Query:  285 MSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITC 406
            MSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITC
Sbjct:    1 MSLVVFVTISITWWRGAWNLLDYYVFPTHRALRALVLTLAGMTFNVLGFLCYPSLLRWSRRITCRRESYVFGTVKRLVLLLRMLASVAHWTGVWDAVDGAFCGEEATSDCSFDYSSLGTITC 122
The following BLAST results are available for this feature:
BLAST of EWM27848.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110174|gb|EWM27848.1|0.000e+0100.00hypothetical protein Naga_100318g2 [Nannochloropsi... [more]
gi|553184179|ref|XP_005854043.1|3.171e-77100.00hypothetical protein NGA_0435700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2836rna2836Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications